FvH4_4g12912

Ribosomal protein-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0001696
Physical Location & Seq
Reverse (-)
16576148 .. 16577511
1364 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g12912.t1

Sequence Viewer

Length: 1107 bp
ATGGCAGATGTTAGCCAAAAGAAAGTTGTCCAACGAAAAGAAAATTTTTCTATCCAAGAAGATGAACTCTTATGTCATATATATCTTGAAATTTCTCAAGATCCTATCGCTGGTGTTAACCTAAAGAAGGATAAAGTATGGGCGAGGATCATTGAATTATGGAATCAAGAGAAGGATGAGAATCAGAAGAGAAGCTCCAAGTCTCTTCAAAGTCGATTTGTAGATCTTACTTACTGTGTAAGCAAATTTCGTGGTGTTGTTCGTCAAGTGGAGGATGACACTCCAAGCGGTGAAAATGAGAAAGATATTCATCTCGATACTGATAGAAGTTCAACAAGACCACGACAAAGGAATGATTCAAGTGAAGAATATGAATCAGCATCTCGCACATCACAATCGTTAGGTACACTACCATTTGATGTCGATTTAAATGTAGATGAAGACGAACAAGAGCTATATAATGATGAACTCGGCACATCTCGTCGACCCATTGGTGTAAAGAAAGCAAAGTTGAAAAGCAAAGAGGCCAATGAGCAAGCCAAGATTGCTAAACAAATCAGAGAATCCAATCAAGAATTGAAGGAGTTATTTGAAAAAAGTCTGTTAGAGAGAAATGCTTTTACTGTTAAGCACGAGCAATATTCATCTCAAATATTAGCTATTCAGCGTGAACGTGAGGAAAACAAAATCATGCTTACTAGTTTGGATACAATTACCGATCCAGAAGAGCGTGAGTACTTACGATCGAGAAAAGCAGAGATAATGGAGAGAAGAGCTCGTCAGTCTCGACAACCACCTACAACATCTAGCTTTGGTAATTTCAATAACATAAACCAATTTCAAGGTGGTTCACAAGGACCTTTCAACTCTGGTAACTTTGCTAGCCAATTCCAATTTCCAACTACATTTGGTGGATACGGGAATCACCATGGAGGAGGAGCTGGATATGGTGGAGTCCCTCATTATGGAGGAAGTGATGGATCAAGAACAAGTGATGCACAAGGAGGAGTGCCACAATTCAGAGATAGCGGTGGATCTAAGACATATAGCGGATATGGACTCATGCCAGTACATGGAAGAGATGATGATGATCTGCCGGATTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Plant_tran

Protein Analysis

369

Amino Acids

41.7

Weight (kDa)

5.49

Isoelectric Point (pI)

54.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM-associated PF14303 115 - 254 6.4e-08 No apical meristem-associated C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1073
AccI GTMKAC 1 cut(s) 484
AciI CCGC 3 cut(s) 288, 1029, 1050
AclWI GGATC 5 cut(s) 95, 155, 713, 988, 1042
AcsI RAATTY 3 cut(s) 43, 90, 245
AfaI GTAC 3 cut(s) 406, 737, 1071
AfiI CCNNNNNNNGG 4 cut(s) 110, 127, 965, 1073
AhlI ACTAGT 1 cut(s) 698
AjuI GAANNNNNNNTTGG 2 cut(s) 879, 911
AluBI AGCT 6 cut(s) 195, 454, 659, 776, 810, 941
AluI AGCT 6 cut(s) 195, 454, 659, 776, 810, 941
Alw21I GWGCWC 1 cut(s) 778
Alw26I GTCTC 2 cut(s) 207, 789
AlwI GGATC 5 cut(s) 95, 155, 713, 988, 1042
AoxI GGCC 1 cut(s) 525
ApoI RAATTY 3 cut(s) 43, 90, 245
AspS9I GGNCC 1 cut(s) 857
AsuHPI GGTGA 2 cut(s) 302, 917
AsuNHI GCTAGC 1 cut(s) 881
AvaII GGWCC 1 cut(s) 857
BanII GRGCYC 1 cut(s) 778
BauI CACGAG 1 cut(s) 632
BbsI GAAGAC 1 cut(s) 447
Bbv12I GWGCWC 1 cut(s) 778
BccI CCATC 1 cut(s) 971
BciVI GTATCC 2 cut(s) 700, 908
BcoDI GTCTC 2 cut(s) 207, 789
BcuI ACTAGT 1 cut(s) 698
BfaI CTAG 3 cut(s) 699, 807, 882
BfuI GTATCC 2 cut(s) 700, 908
BglII AGATCT 1 cut(s) 223
BmcAI AGTACT 1 cut(s) 737
Bme18I GGWCC 1 cut(s) 857
BmgT120I GGNCC 1 cut(s) 857
BmsI GCATC 2 cut(s) 389, 985
BmtI GCTAGC 1 cut(s) 885
BpiI GAAGAC 1 cut(s) 447
BplI GAGNNNNNCTC 2 cut(s) 760, 792
BpuEI CTTGAG 1 cut(s) 81
BsaBI GATNNNNATC 3 cut(s) 180, 309, 1089
BsaJI CCNNGG 1 cut(s) 928
Bsc4I CCNNNNNNNGG 4 cut(s) 110, 127, 965, 1073
Bse1I ACTGG 1 cut(s) 1067
Bse8I GATNNNNATC 3 cut(s) 180, 309, 1089
BseDI CCNNGG 1 cut(s) 928
BseGI GGATG 2 cut(s) 181, 280
BseJI GATNNNNATC 3 cut(s) 180, 309, 1089
BseLI CCNNNNNNNGG 4 cut(s) 110, 127, 965, 1073
BseNI ACTGG 1 cut(s) 1067
BseRI GAGGAG 3 cut(s) 948, 951, 1020
Bsh1285I CGRYCG 1 cut(s) 746
BshFI GGCC 1 cut(s) 527
BsiEI CGRYCG 1 cut(s) 746
BsiHKAI GWGCWC 1 cut(s) 778
BsiSI CCGG 1 cut(s) 1097
BslFI GGGAC 1 cut(s) 941
BslI CCNNNNNNNGG 4 cut(s) 110, 127, 965, 1073
BsmAI GTCTC 2 cut(s) 207, 789
BsmFI GGGAC 1 cut(s) 941
BsnI GGCC 1 cut(s) 527
Bsp1286I GDGCHC 1 cut(s) 778
Bsp143I GATC 8 cut(s) 100, 147, 223, 718, 743, 980, 1034, 1090
Bsp19I CCATGG 1 cut(s) 928
BspACI CCGC 3 cut(s) 288, 1029, 1050
BspANI GGCC 1 cut(s) 527
BspOI GCTAGC 1 cut(s) 885
BspPI GGATC 5 cut(s) 95, 155, 713, 988, 1042
BspQI GCTCTTC 2 cut(s) 720, 766
BsrI ACTGG 1 cut(s) 1067
BssECI CCNNGG 1 cut(s) 928
BssMI GATC 8 cut(s) 100, 147, 223, 718, 743, 980, 1034, 1090
BssSI CACGAG 1 cut(s) 632
BssT1I CCWWGG 1 cut(s) 928
Bst2BI CACGAG 1 cut(s) 632
Bst4CI ACNGT 2 cut(s) 236, 625
Bst6I CTCTTC 5 cut(s) 182, 210, 720, 766, 1072
BstC8I GCNNGC 2 cut(s) 537, 883
BstDEI CTNAG 1 cut(s) 1038
BstDSI CCRYGG 1 cut(s) 928
BstENI CCTNNNNNAGG 1 cut(s) 125
BstF5I GGATG 2 cut(s) 181, 280
BstKTI GATC 8 cut(s) 103, 150, 226, 721, 746, 983, 1037, 1093
BstMAI GTCTC 2 cut(s) 207, 789
BstMBI GATC 8 cut(s) 100, 147, 223, 718, 743, 980, 1034, 1090
BstMCI CGRYCG 1 cut(s) 746
BstMWI GCNNNNNNNGC 1 cut(s) 545
BstV2I GAAGAC 1 cut(s) 447
BstX2I RGATCY 3 cut(s) 100, 223, 1034
BstYI RGATCY 3 cut(s) 100, 223, 1034
BsuI GTATCC 2 cut(s) 700, 908
BsuRI GGCC 1 cut(s) 527
BtgI CCRYGG 1 cut(s) 928
BtsCI GGATG 2 cut(s) 181, 280
Cac8I GCNNGC 2 cut(s) 537, 883
Cfr13I GGNCC 1 cut(s) 857
Csp6I GTAC 3 cut(s) 405, 736, 1070
CspCI CAANNNNNGTGG 2 cut(s) 232, 267
CviAII CATG 4 cut(s) 691, 929, 1063, 1073
CviQI GTAC 3 cut(s) 405, 736, 1070
DdeI CTNAG 1 cut(s) 1038
DpnI GATC 8 cut(s) 102, 149, 225, 720, 745, 982, 1036, 1092
DpnII GATC 8 cut(s) 100, 147, 223, 718, 743, 980, 1034, 1090
DraI TTTAAA 1 cut(s) 429
Eam1104I CTCTTC 5 cut(s) 182, 210, 720, 766, 1072
EarI CTCTTC 5 cut(s) 182, 210, 720, 766, 1072
Ecl136II GAGCTC 1 cut(s) 776
Eco130I CCWWGG 1 cut(s) 928
Eco24I GRGCYC 1 cut(s) 778
Eco47I GGWCC 1 cut(s) 857
Eco53kI GAGCTC 1 cut(s) 776
EcoICRI GAGCTC 1 cut(s) 776
EcoNI CCTNNNNNAGG 1 cut(s) 125
EcoO109I RGGNCCY 1 cut(s) 857
EcoT14I CCWWGG 1 cut(s) 928
EcoT38I GRGCYC 1 cut(s) 778
ErhI CCWWGG 1 cut(s) 928
FaeI CATG 4 cut(s) 694, 932, 1066, 1076
FaqI GGGAC 1 cut(s) 941
FatI CATG 4 cut(s) 690, 928, 1062, 1072
FblI GTMKAC 1 cut(s) 484
FokI GGATG 2 cut(s) 188, 287
FriOI GRGCYC 1 cut(s) 778
FspBI CTAG 3 cut(s) 699, 807, 882
HaeIII GGCC 1 cut(s) 527
HapII CCGG 1 cut(s) 1097
Hin1II CATG 4 cut(s) 694, 932, 1066, 1076
HincII GTYRAC 2 cut(s) 118, 485
HindII GTYRAC 2 cut(s) 118, 485
HinfI GANTC 8 cut(s) 163, 181, 356, 374, 563, 922, 954, 1059
HpaI GTTAAC 1 cut(s) 118
HpaII CCGG 1 cut(s) 1097
HphI GGTGA 2 cut(s) 302, 917
Hpy166II GTNNAC 5 cut(s) 118, 407, 485, 671, 851
Hpy188I TCNGA 3 cut(s) 186, 560, 1022
Hpy188III TCNNGA 9 cut(s) 86, 98, 167, 314, 572, 722, 747, 786, 984
Hpy8I GTNNAC 5 cut(s) 118, 407, 485, 671, 851
Hpy99I CGWCG 1 cut(s) 486
HpyAV CCTTC 3 cut(s) 121, 166, 574
HpyCH4III ACNGT 2 cut(s) 236, 625
HpyCH4IV ACGT 1 cut(s) 673
HpyCH4V TGCA 1 cut(s) 998
HpyF10VI GCNNNNNNNGC 1 cut(s) 545
HpyF3I CTNAG 1 cut(s) 1038
HpySE526I ACGT 1 cut(s) 673
Hsp92II CATG 4 cut(s) 694, 932, 1066, 1076
KspAI GTTAAC 1 cut(s) 118
Kzo9I GATC 8 cut(s) 100, 147, 223, 718, 743, 980, 1034, 1090
LguI GCTCTTC 2 cut(s) 720, 766
LmnI GCTCC 2 cut(s) 200, 938
LpnPI CCDG 5 cut(s) 96, 735, 855, 927, 1080
LweI GCATC 2 cut(s) 389, 985
MaeI CTAG 3 cut(s) 699, 807, 882
MaeII ACGT 1 cut(s) 673
MaeIII GTNAC 1 cut(s) 872
MalI GATC 8 cut(s) 102, 149, 225, 720, 745, 982, 1036, 1092
MboI GATC 8 cut(s) 100, 147, 223, 718, 743, 980, 1034, 1090
MboII GAAGA 8 cut(s) 71, 197, 199, 377, 452, 737, 783, 1089
MflI RGATCY 3 cut(s) 100, 223, 1034
MhlI GDGCHC 1 cut(s) 778
MlyI GAGTC 2 cut(s) 963, 1053
MmeI TCCRAC 2 cut(s) 55, 923
MnlI CCTC 9 cut(s) 138, 265, 517, 670, 926, 929, 962, 969, 998
MseI TTAA 3 cut(s) 117, 428, 627
MspI CCGG 1 cut(s) 1097
MwoI GCNNNNNNNGC 1 cut(s) 545
NcoI CCATGG 1 cut(s) 928
NdeII GATC 8 cut(s) 100, 147, 223, 718, 743, 980, 1034, 1090
NheI GCTAGC 1 cut(s) 881
NlaIII CATG 4 cut(s) 694, 932, 1066, 1076
NmeAIII GCCGAG 1 cut(s) 450
PciSI GCTCTTC 2 cut(s) 720, 766
PcsI WCGNNNNNNNCGW 1 cut(s) 784
PfeI GAWTC 6 cut(s) 163, 181, 356, 374, 563, 922
PflMI CCANNNNNTGG 1 cut(s) 1073
Ple19I CGATCG 1 cut(s) 746
PleI GAGTC 2 cut(s) 962, 1053
PpsI GAGTC 2 cut(s) 962, 1053
PpuMI RGGWCCY 1 cut(s) 857
Psp124BI GAGCTC 1 cut(s) 778
Psp5II RGGWCCY 1 cut(s) 857
PspPI GGNCC 1 cut(s) 857
PspPPI RGGWCCY 1 cut(s) 857
PsuI RGATCY 3 cut(s) 100, 223, 1034
PvuI CGATCG 1 cut(s) 746
RsaI GTAC 3 cut(s) 406, 737, 1071
RsaNI GTAC 3 cut(s) 405, 736, 1070
SacI GAGCTC 1 cut(s) 778
SalI GTCGAC 1 cut(s) 483
SapI GCTCTTC 2 cut(s) 720, 766
SaqAI TTAA 3 cut(s) 117, 428, 627
Sau3AI GATC 8 cut(s) 100, 147, 223, 718, 743, 980, 1034, 1090
Sau96I GGNCC 1 cut(s) 857
ScaI AGTACT 1 cut(s) 737
SchI GAGTC 2 cut(s) 963, 1053
SduI GDGCHC 1 cut(s) 778
SfaNI GCATC 2 cut(s) 389, 985
SinI GGWCC 1 cut(s) 857
SmiI ATTTAAAT 1 cut(s) 429
SmlI CTYRAG 1 cut(s) 96
SmoI CTYRAG 1 cut(s) 96
SpeI ACTAGT 1 cut(s) 698
SsiI CCGC 3 cut(s) 288, 1029, 1050
SspI AATATT 2 cut(s) 641, 654
SspMI CTAG 3 cut(s) 699, 807, 882
SstI GAGCTC 1 cut(s) 778
StyI CCWWGG 1 cut(s) 928
SwaI ATTTAAAT 1 cut(s) 429
TaaI ACNGT 2 cut(s) 236, 625
TaiI ACGT 1 cut(s) 676
TaqI TCGA 6 cut(s) 214, 315, 423, 484, 746, 787
TatI WGTACW 2 cut(s) 735, 1069
TfiI GAWTC 6 cut(s) 163, 181, 356, 374, 563, 922
Tru1I TTAA 3 cut(s) 117, 428, 627
Tru9I TTAA 3 cut(s) 117, 428, 627
TspDTI ATGAA 6 cut(s) 78, 299, 387, 453, 480, 633
Van91I CCANNNNNTGG 1 cut(s) 1073
VpaK11BI GGWCC 1 cut(s) 857
XagI CCTNNNNNAGG 1 cut(s) 125
XapI RAATTY 3 cut(s) 43, 90, 245
XcmI CCANNNNNNNNNTGG 1 cut(s) 842
XmiI GTMKAC 1 cut(s) 484
XspI CTAG 3 cut(s) 699, 807, 882
ZrmI AGTACT 1 cut(s) 737
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.