Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0001696

Physical Location & Seq

Genomic Coordinates Reverse (-)

57790097 .. 57790936

Gene Structure 840 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG423800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 840 bp

ATGGATGATCCAACTTATAAGAAGAAAAAGTTTCAATTTGATCATGTGTGGCCTCTTCTAAAAAATGCGGAAAAATGGCTTGATAATGATGCCATGCACGTCGCTAAACCGCATAGAAGAAAGGAGTCATCTGAAGGATCTCAATCAGGTTCTCGCACATCAAAGTCATCTGAAACTCCATCATTTTGTGTTGATTTGAATGCAGATGAAGATGAGCAAGAGTACATCAATGATGAAGTTGCTTCACATGATCGTCCCATGGGAACGAAGATGGCAAAGATGAAAAGGAAATCCACTGAGGAGAAGAAAAAGAATTATGATAAGATCATGGCCGACAATCAAGCGATAAAAGAGTTACTTGAAAAAAGTATGCTGGAGAAAACAAGCTTCGCTTCCAAAATTGAGCATTACACGTCAAACAAACTGAATATCCAACGCCAGCGCGATGAGGACAAAATCATGCTAACCAGTTTGGATTCCATAACAGATCCAACGGACCGTGACTTCTTGAAGATTAGAAAGGCGGAAATTATGCAGAGAAGAGCTCGTGAGTTCCAATCACAAGGACCACCCGCTACATTTGGCTACGGTAACTTTAGTAACCTAAACTCATTCCAAAATGGTTATGAAGCTACCTTTCATTATGGAAATTTTGGTAGTCCCTTACAATTTCCAAGTGGATTCGGAGGAAGCGGTGCGTATGGAGGAGTGCCCCATGCTGGAGGAAGTAGTCAATTTGGAACAAGTAGTGCTGAAGTTGTGCCTGACGACAATCAAAGTGGTGGATTTAGAACAAGTGATGGTTATGGAGGAAGTGATGCTAATCTGCCGGAATATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM-associated

Protein Analysis

279

Amino Acids

31.31

Weight (kDa)

6.02

Isoelectric Point (pI)

47.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM-associated	PF14303	9 - 177	3.1e-17	No apical meristem-associated C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001696)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24380 AT1G66235 AT1G66235 AT2G13760 AT4G10230
fragaria_vesca	FvH4_1g29460 FvH4_1g29461 FvH4_2g00671 FvH4_2g02401 FvH4_4g12912 FvH4_5g16793 FvH4_5g35255 FvH4_6g21850
rosa_laevigata	RLG00000001802 RLG00000007297 RLG00000009939 RLG00000014129 RLG00000020485 RLG00000020868 RLG00000022589 RLG00000026627
rosa_multiflora	Rmu_co8293213.1_g000001 Rmu_co8323109.1_g000001 Rmu_sc0000149.1_g000032 Rmu_sc0000775.1_g000012 Rmu_sc0000776.1_g000009 Rmu_sc0001872.1_g000007 Rmu_sc0002666.1_g000024 Rmu_sc0003767.1_g000003 Rmu_sc0006410.1_g000019 Rmu_sc0006797.1_g000002 Rmu_sc0014826.1_g000002 Rmu_sc0015243.1_g000005 Rmu_sc0033419.1_g000002
rosa_roxburghii	Rroxscaffold_4G00296630 Rroxscaffold_7G00202090
rosa_samantha	Rh1BG046500 Rh2CG257500 Rh2CG423800 Rh2CG423900 Rh4BG046900 Rh4BG047000 Rh4BG078300 Rh5CG060500 Rh5CG341400 Rh6DG172800 Rh7BG334200
rosa_wichuraiana	Rw7G024310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	18
AccII	CGCG	1 cut(s)	444
AciI	CCGC	5 cut(s)	68, 110, 524, 573, 693
AclWI	GGATC	3 cut(s)	2, 145, 482
AcoI	YGGCCR	1 cut(s)	330
AcsI	RAATTY	1 cut(s)	649
AcuI	CTGAAG	2 cut(s)	153, 774
AfaI	GTAC	1 cut(s)	224
AfiI	CCNNNNNNNGG	1 cut(s)	719
AflIII	ACRYGT	1 cut(s)	411
AgsI	TTSAA	4 cut(s)	35, 199, 362, 511
AjiI	CACGTC	2 cut(s)	100, 414
AluBI	AGCT	3 cut(s)	387, 545, 632
AluI	AGCT	3 cut(s)	387, 545, 632
Alw21I	GWGCWC	1 cut(s)	547
AlwI	GGATC	3 cut(s)	2, 145, 482
AoxI	GGCC	2 cut(s)	50, 330
ApoI	RAATTY	1 cut(s)	649
AspLEI	GCGC	1 cut(s)	444
AspS9I	GGNCC	2 cut(s)	496, 566
AvaII	GGWCC	2 cut(s)	496, 566
BaeGI	GKGCMC	1 cut(s)	714
BanII	GRGCYC	1 cut(s)	547
BauI	CACGAG	1 cut(s)	546
Bbv12I	GWGCWC	1 cut(s)	547
BccI	CCATC	3 cut(s)	187, 265, 794
BclI	TGATCA	1 cut(s)	40
Bme18I	GGWCC	2 cut(s)	496, 566
BmgBI	CACGTC	2 cut(s)	100, 414
BmgT120I	GGNCC	2 cut(s)	496, 566
BmsI	GCATC	2 cut(s)	79, 808
BplI	GAGNNNNNCTC	2 cut(s)	529, 561
BpmI	CTGGAG	2 cut(s)	395, 741
BsaBI	GATNNNNATC	2 cut(s)	142, 822
BsaJI	CCNNGG	1 cut(s)	258
Bsc4I	CCNNNNNNNGG	1 cut(s)	719
Bse1I	ACTGG	1 cut(s)	468
Bse8I	GATNNNNATC	2 cut(s)	142, 822
BseDI	CCNNGG	1 cut(s)	258
BseGI	GGATG	1 cut(s)	10
BseJI	GATNNNNATC	2 cut(s)	142, 822
BseLI	CCNNNNNNNGG	1 cut(s)	719
BseMII	CTCAG	1 cut(s)	288
BseNI	ACTGG	1 cut(s)	468
BseRI	GAGGAG	2 cut(s)	314, 720
BseSI	GKGCMC	1 cut(s)	714
Bsh1236I	CGCG	1 cut(s)	444
BshFI	GGCC	2 cut(s)	52, 332
BsiHKAI	GWGCWC	1 cut(s)	547
BsiSI	CCGG	1 cut(s)	830
BslFI	GGGAC	2 cut(s)	240, 645
BslI	CCNNNNNNNGG	1 cut(s)	719
BsmFI	GGGAC	2 cut(s)	240, 645
BsmI	GAATGC	1 cut(s)	205
BsnI	GGCC	2 cut(s)	52, 332
Bsp1286I	GDGCHC	2 cut(s)	547, 714
Bsp143I	GATC	6 cut(s)	7, 40, 137, 250, 324, 487
Bsp19I	CCATGG	1 cut(s)	258
BspACI	CCGC	5 cut(s)	68, 110, 524, 573, 693
BspANI	GGCC	2 cut(s)	52, 332
BspCNI	CTCAG	1 cut(s)	289
BspFNI	CGCG	1 cut(s)	444
BspPI	GGATC	3 cut(s)	2, 145, 482
BspQI	GCTCTTC	1 cut(s)	535
BsrI	ACTGG	1 cut(s)	468
BssECI	CCNNGG	1 cut(s)	258
BssMI	GATC	6 cut(s)	7, 40, 137, 250, 324, 487
BssSI	CACGAG	1 cut(s)	546
BssT1I	CCWWGG	1 cut(s)	258
Bst2BI	CACGAG	1 cut(s)	546
Bst4CI	ACNGT	2 cut(s)	500, 590
Bst6I	CTCTTC	2 cut(s)	60, 535
BstC8I	GCNNGC	1 cut(s)	440
BstDEI	CTNAG	1 cut(s)	297
BstDSI	CCRYGG	1 cut(s)	258
BstF5I	GGATG	1 cut(s)	10
BstFNI	CGCG	1 cut(s)	444
BstHHI	GCGC	1 cut(s)	444
BstKTI	GATC	6 cut(s)	10, 43, 140, 253, 327, 490
BstMBI	GATC	6 cut(s)	7, 40, 137, 250, 324, 487
BstSLI	GKGCMC	1 cut(s)	714
BstUI	CGCG	1 cut(s)	444
BstX2I	RGATCY	2 cut(s)	137, 487
BstYI	RGATCY	2 cut(s)	137, 487
BsuRI	GGCC	2 cut(s)	52, 332
BtgI	CCRYGG	1 cut(s)	258
BtgZI	GCGATG	1 cut(s)	459
BtrI	CACGTC	2 cut(s)	100, 414
BtsCI	GGATG	1 cut(s)	10
BtsIMutI	CAGTG	1 cut(s)	294
Cac8I	GCNNGC	1 cut(s)	440
CfoI	GCGC	1 cut(s)	444
Cfr13I	GGNCC	2 cut(s)	496, 566
CpoI	CGGWCCG	1 cut(s)	496
Csp6I	GTAC	1 cut(s)	223
CspCI	CAANNNNNGTGG	2 cut(s)	760, 795
CspI	CGGWCCG	1 cut(s)	496
CviAII	CATG	7 cut(s)	44, 94, 248, 259, 328, 460, 716
CviJI	RGCY	7 cut(s)	52, 79, 332, 387, 545, 585, 632
CviKI_1	RGCY	7 cut(s)	52, 79, 332, 387, 545, 585, 632
CviQI	GTAC	1 cut(s)	223
DdeI	CTNAG	1 cut(s)	297
DpnI	GATC	6 cut(s)	9, 42, 139, 252, 326, 489
DpnII	GATC	6 cut(s)	7, 40, 137, 250, 324, 487
EaeI	YGGCCR	1 cut(s)	330
Eam1104I	CTCTTC	2 cut(s)	60, 535
EarI	CTCTTC	2 cut(s)	60, 535
EciI	GGCGGA	1 cut(s)	539
Ecl136II	GAGCTC	1 cut(s)	545
Eco130I	CCWWGG	1 cut(s)	258
Eco24I	GRGCYC	1 cut(s)	547
Eco47I	GGWCC	2 cut(s)	496, 566
Eco53kI	GAGCTC	1 cut(s)	545
Eco57I	CTGAAG	2 cut(s)	153, 774
EcoICRI	GAGCTC	1 cut(s)	545
EcoT14I	CCWWGG	1 cut(s)	258
EcoT38I	GRGCYC	1 cut(s)	547
ErhI	CCWWGG	1 cut(s)	258
FaeI	CATG	7 cut(s)	47, 97, 251, 262, 331, 463, 719
FalI	AAGNNNNNCTT	4 cut(s)	342, 374, 376, 408
FaqI	GGGAC	2 cut(s)	240, 645
FatI	CATG	7 cut(s)	43, 93, 247, 258, 327, 459, 715
FauI	CCCGC	1 cut(s)	580
FbaI	TGATCA	1 cut(s)	40
FokI	GGATG	1 cut(s)	17
FriOI	GRGCYC	1 cut(s)	547
GlaI	GCGC	1 cut(s)	443
GsuI	CTGGAG	2 cut(s)	395, 741
HaeIII	GGCC	2 cut(s)	52, 332
HapII	CCGG	1 cut(s)	830
HhaI	GCGC	1 cut(s)	444
Hin1II	CATG	7 cut(s)	47, 97, 251, 262, 331, 463, 719
Hin6I	GCGC	1 cut(s)	442
HinP1I	GCGC	1 cut(s)	442
HindIII	AAGCTT	1 cut(s)	385
HinfI	GANTC	3 cut(s)	125, 476, 681
HpaII	CCGG	1 cut(s)	830
Hpy188I	TCNGA	3 cut(s)	133, 172, 686
Hpy188III	TCNNGA	2 cut(s)	508, 548
Hpy99I	CGWCG	1 cut(s)	104
HpyAV	CCTTC	1 cut(s)	128
HpyCH4III	ACNGT	2 cut(s)	500, 590
HpyCH4IV	ACGT	2 cut(s)	99, 413
HpyCH4V	TGCA	3 cut(s)	97, 203, 535
HpyF3I	CTNAG	1 cut(s)	297
HpySE526I	ACGT	2 cut(s)	99, 413
Hsp92II	CATG	7 cut(s)	47, 97, 251, 262, 331, 463, 719
HspAI	GCGC	1 cut(s)	442
Ksp22I	TGATCA	1 cut(s)	40
Kzo9I	GATC	6 cut(s)	7, 40, 137, 250, 324, 487
LguI	GCTCTTC	1 cut(s)	535
LpnPI	CCDG	6 cut(s)	132, 359, 452, 481, 705, 777
LweI	GCATC	2 cut(s)	79, 808
MaeII	ACGT	2 cut(s)	99, 413
MaeIII	GTNAC	4 cut(s)	354, 500, 590, 599
MalI	GATC	6 cut(s)	9, 42, 139, 252, 326, 489
MboI	GATC	6 cut(s)	7, 40, 137, 250, 324, 487
MboII	GAAGA	8 cut(s)	34, 47, 129, 221, 280, 316, 523, 552
MflI	RGATCY	2 cut(s)	137, 487
MhlI	GDGCHC	2 cut(s)	547, 714
MluCI	AATT	7 cut(s)	35, 313, 399, 528, 649, 668, 734
MlyI	GAGTC	1 cut(s)	134
MmeI	TCCRAC	3 cut(s)	35, 457, 515
MnlI	CCTC	7 cut(s)	63, 292, 442, 680, 698, 716, 803
MspI	CCGG	1 cut(s)	830
Mva1269I	GAATGC	1 cut(s)	205
MvnI	CGCG	1 cut(s)	444
NcoI	CCATGG	1 cut(s)	258
NdeII	GATC	6 cut(s)	7, 40, 137, 250, 324, 487
NlaIII	CATG	7 cut(s)	47, 97, 251, 262, 331, 463, 719
NmuCI	GTSAC	1 cut(s)	500
PciSI	GCTCTTC	1 cut(s)	535
PctI	GAATGC	1 cut(s)	205
PfeI	GAWTC	2 cut(s)	476, 681
PleI	GAGTC	1 cut(s)	133
PpsI	GAGTC	1 cut(s)	133
PsiI	TTATAA	1 cut(s)	18
Psp124BI	GAGCTC	1 cut(s)	547
PspPI	GGNCC	2 cut(s)	496, 566
PsuI	RGATCY	2 cut(s)	137, 487
RsaI	GTAC	1 cut(s)	224
RsaNI	GTAC	1 cut(s)	223
Rsr2I	CGGWCCG	1 cut(s)	496
RsrII	CGGWCCG	1 cut(s)	496
SacI	GAGCTC	1 cut(s)	547
SapI	GCTCTTC	1 cut(s)	535
Sau3AI	GATC	6 cut(s)	7, 40, 137, 250, 324, 487
Sau96I	GGNCC	2 cut(s)	496, 566
SchI	GAGTC	1 cut(s)	134
SduI	GDGCHC	2 cut(s)	547, 714
SetI	ASST	8 cut(s)	102, 151, 389, 416, 547, 606, 634, 638
SfaNI	GCATC	2 cut(s)	79, 808
SinI	GGWCC	2 cut(s)	496, 566
Sse9I	AATT	7 cut(s)	35, 313, 399, 528, 649, 668, 734
SsiI	CCGC	5 cut(s)	68, 110, 524, 573, 693
SspI	AATATT	1 cut(s)	836
SstI	GAGCTC	1 cut(s)	547
StyI	CCWWGG	1 cut(s)	258
TaaI	ACNGT	2 cut(s)	500, 590
TaiI	ACGT	2 cut(s)	102, 416
TasI	AATT	7 cut(s)	35, 313, 399, 528, 649, 668, 734
TatI	WGTACW	1 cut(s)	222
TfiI	GAWTC	2 cut(s)	476, 681
TscAI	CASTG	1 cut(s)	301
TseFI	GTSAC	1 cut(s)	500
Tsp45I	GTSAC	1 cut(s)	500
TspDTI	ATGAA	5 cut(s)	222, 249, 296, 629, 642
TspGWI	ACGGA	1 cut(s)	509
TspRI	CASTG	1 cut(s)	301
VpaK11BI	GGWCC	2 cut(s)	496, 566
XapI	RAATTY	1 cut(s)	649

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.