RLG00000007297

Ribosomal protein-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0001696
Physical Location & Seq
Forward (+)
15520880 .. 15521978
1099 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000007297

Sequence Viewer

Length: 819 bp
ATGAAGGCAAGTCTGAGGAAAGGAGTCGATCTGGTGGGTTGCTTCAAAGTCGATTTTCTGATCTATGCTTACCGGTCAGTAAACTTCGTGTTCAAGAAAGCTAAGGAATCTCTCCTAGATGATTCAACTTATAAGAAGAAAAAGTTTCAATTTGACCATGTGTGGCCCATTCTAAAAAATGCTGAGAAATGGCTTGATAATGCTGCCATGACCGCTCCTAAACCTCGTAGAAGGAAGGAGTCATCTGAAGGATCTCAATCAGGTTCTCGCACATCAAGGACATCTGATACTCCATCGTTTTCTGTTGATTTAAATGCAGATGAAGATGAGCAAGAGTACATCAACGATGAAGTTGCTTCACATGATCGTCCCATGGGAACAAGGATGGCAAAGATGAAAAGGAAAGCCACCGATGAGAAGAAAAAGAATTATGATAAGATCATGGCCGATAACCAAGCAATAAAAGAGTTACTTGAAAAAAATCCAACAGACCGTGAATTCTTGAAGATGAGGAAGGCAGAAGTTATGCAAAGAAGAGCTCGTGAGTCTCAATCACAAGGATCACCACCTACTACATTTGGCTATGGTAACTTTAGTAACCTTAACCAGTTTCAAAGTGGTTCTGAAGCTACATTTCATTCTGGAAATTTTGGTAGTCCTTTACAATTTTCAAGTGGATTCGGAGGAAGTGGTGGGAGTGGAGGAGTACTACATGCTGGAGGAAGTAGCGGTGGAGGAGTGCCTGAGTACAATGAAAGTGGTGGATTCGGAACAAGCGATGGTTATGGAGGAAGTGATGCTAATCTACCGGAATACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Plant_tran

Protein Analysis

273

Amino Acids

30.0

Weight (kDa)

8.91

Isoelectric Point (pI)

43.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM-associated PF14303 47 - 181 1.1e-12 No apical meristem-associated C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 132
AccBSI CCGCTC 1 cut(s) 215
AciI CCGC 2 cut(s) 213, 729
AclWI GGATC 2 cut(s) 259, 568
AcoI YGGCCR 1 cut(s) 444
AcsI RAATTY 2 cut(s) 497, 646
AcuI CTGAAG 2 cut(s) 267, 645
AfaI GTAC 3 cut(s) 338, 708, 749
AgeI ACCGGT 1 cut(s) 72
AgsI TTSAA 8 cut(s) 46, 94, 126, 149, 476, 505, 614, 672
AluBI AGCT 3 cut(s) 101, 539, 629
AluI AGCT 3 cut(s) 101, 539, 629
Alw21I GWGCWC 1 cut(s) 541
Alw26I GTCTC 1 cut(s) 552
AlwI GGATC 2 cut(s) 259, 568
AoxI GGCC 2 cut(s) 164, 444
ApeKI GCWGC 1 cut(s) 203
ApoI RAATTY 2 cut(s) 497, 646
AsiGI ACCGGT 1 cut(s) 72
AspS9I GGNCC 1 cut(s) 165
AsuHPI GGTGA 1 cut(s) 555
BanII GRGCYC 1 cut(s) 541
BauI CACGAG 1 cut(s) 540
Bbv12I GWGCWC 1 cut(s) 541
BbvI GCAGC 1 cut(s) 190
BccI CCATC 3 cut(s) 301, 379, 773
BcgI CGANNNNNNTGC 2 cut(s) 335, 369
BcoDI GTCTC 1 cut(s) 552
BfaI CTAG 2 cut(s) 116, 817
BisI GCNGC 1 cut(s) 204
BlsI GCNGC 1 cut(s) 205
BmcAI AGTACT 1 cut(s) 708
BmgT120I GGNCC 1 cut(s) 165
BmsI GCATC 1 cut(s) 787
BpmI CTGGAG 1 cut(s) 738
Bpu10I CCTNAGC 1 cut(s) 102
BsaBI GATNNNNATC 2 cut(s) 256, 801
BsaJI CCNNGG 1 cut(s) 372
BsaWI WCCGGW 2 cut(s) 72, 808
Bse118I RCCGGY 1 cut(s) 72
Bse1I ACTGG 1 cut(s) 607
Bse8I GATNNNNATC 2 cut(s) 256, 801
BseDI CCNNGG 1 cut(s) 372
BseGI GGATG 1 cut(s) 390
BseJI GATNNNNATC 2 cut(s) 256, 801
BseMII CTCAG 3 cut(s) 5, 174, 735
BseNI ACTGG 1 cut(s) 607
BseRI GAGGAG 2 cut(s) 717, 750
BseXI GCAGC 1 cut(s) 190
BshFI GGCC 2 cut(s) 166, 446
BshTI ACCGGT 1 cut(s) 72
BsiHKAI GWGCWC 1 cut(s) 541
BsiSI CCGG 2 cut(s) 73, 809
BslFI GGGAC 1 cut(s) 354
BsmAI GTCTC 1 cut(s) 552
BsmFI GGGAC 1 cut(s) 354
BsnI GGCC 2 cut(s) 166, 446
Bsp1286I GDGCHC 1 cut(s) 541
Bsp143I GATC 6 cut(s) 28, 60, 251, 364, 438, 560
Bsp19I CCATGG 1 cut(s) 372
BspACI CCGC 2 cut(s) 213, 729
BspANI GGCC 2 cut(s) 166, 446
BspCNI CTCAG 3 cut(s) 6, 175, 736
BspPI GGATC 2 cut(s) 259, 568
BspQI GCTCTTC 1 cut(s) 529
BsrBI CCGCTC 1 cut(s) 215
BsrFI RCCGGY 1 cut(s) 72
BsrI ACTGG 1 cut(s) 607
BssAI RCCGGY 1 cut(s) 72
BssECI CCNNGG 1 cut(s) 372
BssMI GATC 6 cut(s) 28, 60, 251, 364, 438, 560
BssSI CACGAG 1 cut(s) 540
BssT1I CCWWGG 1 cut(s) 372
Bst2BI CACGAG 1 cut(s) 540
Bst4CI ACNGT 1 cut(s) 494
Bst6I CTCTTC 1 cut(s) 529
BstDEI CTNAG 4 cut(s) 14, 102, 183, 744
BstDSI CCRYGG 1 cut(s) 372
BstF5I GGATG 1 cut(s) 390
BstKTI GATC 6 cut(s) 31, 63, 254, 367, 441, 563
BstMAI GTCTC 1 cut(s) 552
BstMBI GATC 6 cut(s) 28, 60, 251, 364, 438, 560
BstMWI GCNNNNNNNGC 1 cut(s) 212
BstNSI RCATGY 1 cut(s) 716
BstV1I GCAGC 1 cut(s) 190
BstX2I RGATCY 1 cut(s) 251
BstYI RGATCY 1 cut(s) 251
BsuRI GGCC 2 cut(s) 166, 446
BtgI CCRYGG 1 cut(s) 372
BtgZI GCGATG 1 cut(s) 792
BtsCI GGATG 1 cut(s) 390
Cfr10I RCCGGY 1 cut(s) 72
Cfr13I GGNCC 1 cut(s) 165
Csp6I GTAC 3 cut(s) 337, 707, 748
CspAI ACCGGT 1 cut(s) 72
CspCI CAANNNNNGTGG 2 cut(s) 739, 774
CviAII CATG 6 cut(s) 158, 208, 362, 373, 442, 713
CviJI RGCY 8 cut(s) 101, 166, 193, 407, 446, 539, 582, 629
CviKI_1 RGCY 8 cut(s) 101, 166, 193, 407, 446, 539, 582, 629
CviQI GTAC 3 cut(s) 337, 707, 748
DdeI CTNAG 4 cut(s) 14, 102, 183, 744
DpnI GATC 6 cut(s) 30, 62, 253, 366, 440, 562
DpnII GATC 6 cut(s) 28, 60, 251, 364, 438, 560
DraI TTTAAA 1 cut(s) 312
EaeI YGGCCR 1 cut(s) 444
Eam1104I CTCTTC 1 cut(s) 529
EarI CTCTTC 1 cut(s) 529
Ecl136II GAGCTC 1 cut(s) 539
Eco130I CCWWGG 1 cut(s) 372
Eco24I GRGCYC 1 cut(s) 541
Eco53kI GAGCTC 1 cut(s) 539
Eco57I CTGAAG 2 cut(s) 267, 645
EcoICRI GAGCTC 1 cut(s) 539
EcoRI GAATTC 1 cut(s) 497
EcoT14I CCWWGG 1 cut(s) 372
EcoT38I GRGCYC 1 cut(s) 541
ErhI CCWWGG 1 cut(s) 372
FaeI CATG 6 cut(s) 161, 211, 365, 376, 445, 716
FalI AAGNNNNNCTT 2 cut(s) 456, 488
FaqI GGGAC 1 cut(s) 354
FatI CATG 6 cut(s) 157, 207, 361, 372, 441, 712
Fnu4HI GCNGC 1 cut(s) 204
FokI GGATG 1 cut(s) 397
FriOI GRGCYC 1 cut(s) 541
Fsp4HI GCNGC 1 cut(s) 204
FspBI CTAG 2 cut(s) 116, 817
GluI GCNGC 1 cut(s) 204
GsuI CTGGAG 1 cut(s) 738
HaeIII GGCC 2 cut(s) 166, 446
HapII CCGG 2 cut(s) 73, 809
Hin1II CATG 6 cut(s) 161, 211, 365, 376, 445, 716
HinfI GANTC 7 cut(s) 24, 107, 122, 239, 545, 678, 765
HpaII CCGG 2 cut(s) 73, 809
HphI GGTGA 1 cut(s) 555
Hpy166II GTNNAC 1 cut(s) 82
Hpy188I TCNGA 7 cut(s) 15, 60, 247, 286, 625, 683, 770
Hpy188III TCNNGA 4 cut(s) 94, 502, 542, 642
Hpy8I GTNNAC 1 cut(s) 82
HpyAV CCTTC 4 cut(s) 225, 229, 242, 508
HpyCH4III ACNGT 1 cut(s) 494
HpyCH4V TGCA 2 cut(s) 317, 529
HpyF10VI GCNNNNNNNGC 1 cut(s) 212
HpyF3I CTNAG 4 cut(s) 14, 102, 183, 744
Hsp92II CATG 6 cut(s) 161, 211, 365, 376, 445, 716
Kzo9I GATC 6 cut(s) 28, 60, 251, 364, 438, 560
LguI GCTCTTC 1 cut(s) 529
LmnI GCTCC 1 cut(s) 220
LpnPI CCDG 7 cut(s) 17, 86, 246, 620, 627, 702, 756
Lsp1109I GCAGC 1 cut(s) 190
LweI GCATC 1 cut(s) 787
MaeI CTAG 2 cut(s) 116, 817
MaeIII GTNAC 3 cut(s) 468, 587, 596
MalI GATC 6 cut(s) 30, 62, 253, 366, 440, 562
MbiI CCGCTC 1 cut(s) 215
MboI GATC 6 cut(s) 28, 60, 251, 364, 438, 560
MboII GAAGA 5 cut(s) 148, 335, 430, 517, 546
MflI RGATCY 1 cut(s) 251
MhlI GDGCHC 1 cut(s) 541
MluCI AATT 5 cut(s) 149, 427, 497, 646, 665
MlyI GAGTC 3 cut(s) 33, 248, 554
MmeI TCCRAC 1 cut(s) 509
MnlI CCTC 8 cut(s) 9, 234, 504, 677, 695, 713, 728, 782
MseI TTAA 2 cut(s) 311, 603
MspI CCGG 2 cut(s) 73, 809
MwoI GCNNNNNNNGC 1 cut(s) 212
NcoI CCATGG 1 cut(s) 372
NdeII GATC 6 cut(s) 28, 60, 251, 364, 438, 560
NlaIII CATG 6 cut(s) 161, 211, 365, 376, 445, 716
NspI RCATGY 1 cut(s) 716
PciSI GCTCTTC 1 cut(s) 529
PcsI WCGNNNNNNNCGW 1 cut(s) 774
PfeI GAWTC 4 cut(s) 107, 122, 678, 765
PinAI ACCGGT 1 cut(s) 72
PkrI GCNGC 1 cut(s) 205
PleI GAGTC 3 cut(s) 32, 247, 553
PpsI GAGTC 3 cut(s) 32, 247, 553
PsiI TTATAA 1 cut(s) 132
Psp124BI GAGCTC 1 cut(s) 541
PspPI GGNCC 1 cut(s) 165
PsuI RGATCY 1 cut(s) 251
RsaI GTAC 3 cut(s) 338, 708, 749
RsaNI GTAC 3 cut(s) 337, 707, 748
SacI GAGCTC 1 cut(s) 541
SapI GCTCTTC 1 cut(s) 529
SaqAI TTAA 2 cut(s) 311, 603
SatI GCNGC 1 cut(s) 204
Sau3AI GATC 6 cut(s) 28, 60, 251, 364, 438, 560
Sau96I GGNCC 1 cut(s) 165
ScaI AGTACT 1 cut(s) 708
SchI GAGTC 3 cut(s) 33, 248, 554
SduI GDGCHC 1 cut(s) 541
SetI ASST 7 cut(s) 103, 226, 265, 541, 571, 603, 631
SfaNI GCATC 1 cut(s) 787
SmiI ATTTAAAT 1 cut(s) 312
Sse9I AATT 5 cut(s) 149, 427, 497, 646, 665
SsiI CCGC 2 cut(s) 213, 729
SspMI CTAG 2 cut(s) 116, 817
SstI GAGCTC 1 cut(s) 541
StyI CCWWGG 1 cut(s) 372
SwaI ATTTAAAT 1 cut(s) 312
TaaI ACNGT 1 cut(s) 494
TaqI TCGA 2 cut(s) 27, 51
TasI AATT 5 cut(s) 149, 427, 497, 646, 665
TatI WGTACW 3 cut(s) 336, 706, 747
TfiI GAWTC 4 cut(s) 107, 122, 678, 765
Tru1I TTAA 2 cut(s) 311, 603
Tru9I TTAA 2 cut(s) 311, 603
TseI GCWGC 1 cut(s) 203
TspDTI ATGAA 6 cut(s) 17, 336, 363, 410, 626, 768
XapI RAATTY 2 cut(s) 497, 646
XceI RCATGY 1 cut(s) 716
XcmI CCANNNNNNNNNTGG 1 cut(s) 614
XspI CTAG 2 cut(s) 116, 817
ZrmI AGTACT 1 cut(s) 708
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.