RLG00000014129

No apical meristem-associated C-terminal domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0001696
Physical Location & Seq
Reverse (-)
47799988 .. 47802333
2346 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000014129

Sequence Viewer

Length: 735 bp
ATGGATTCATCCCAAATATCATCATCCTCTCTTTCTTCAAATGGAACTGTTGAGTATTGCAATTCTGTCTTGGCCGCATTTGATCGGGAGCAAGATTTATTACTTCGTATGTGTGCTAACAACAATCTCCTCTTAGTAGAAAATCTCGACGACAAAGAAGATAATGCTCATTCATGCCGGAGAGTTGCAATTCCTGGTCACATAGTTGATGAAGATGTGCAAGAGTACATCAATGATGAAGTTGCTTCACATGATCGTCTCATGGGAACGAAGATGGCAAAGATGAAAAGGAAAGCCATCGATGAGAAGAAAAAGGGTTATGATAAGATCATGGCCGATAACCAAGCAATAAAAGAGTTACTTGAAAAAAGTATGCTGGAGAGATCAAGTTCCGCTTCCAAGTTTGACCATTACATGTCAAGCAAATTGGATATTCAACATCAGCGCGAAGAGAATAAAATCATGCGGACCAATTTGGATTCCATAATAGATCCAACAGACCGTGAATTCTTGAAGATGAGGAAGGCAGAAGTTATGCAAAGAAGAGCTCGCCTTTACAATTTTCAAGTGGATTCGGAGGAAGTGGTGGGAGTGGAGGAGTACCACATGCTGGAGGAAGTAGTGGGTTTGGAACAAGTAGCGGTGGAGGAGTACCTGAGTACAATGAAAGTGGTGGATTCGGAACAAGCGATGGTTATGGAGGAAGTGATGCTAATCTACCGGAATACGAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM-associated

Protein Analysis

245

Amino Acids

28.15

Weight (kDa)

4.91

Isoelectric Point (pI)

47.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM-associated PF14303 78 - 177 2e-06 No apical meristem-associated C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 610
AccII CGCG 1 cut(s) 447
AciI CCGC 4 cut(s) 75, 393, 466, 641
AclWI GGATC 1 cut(s) 485
AcoI YGGCCR 2 cut(s) 72, 333
AcsI RAATTY 1 cut(s) 506
AfaI GTAC 4 cut(s) 227, 602, 653, 661
AfiI CCNNNNNNNGG 1 cut(s) 610
AflIII ACRYGT 1 cut(s) 414
AgsI TTSAA 5 cut(s) 39, 365, 437, 514, 566
AjnI CCWGG 1 cut(s) 193
AluBI AGCT 2 cut(s) 548, 732
AluI AGCT 2 cut(s) 548, 732
Alw21I GWGCWC 1 cut(s) 550
Alw26I GTCTC 1 cut(s) 263
AlwI GGATC 1 cut(s) 485
AoxI GGCC 2 cut(s) 72, 333
ApoI RAATTY 1 cut(s) 506
AspLEI GCGC 1 cut(s) 447
AspS9I GGNCC 1 cut(s) 468
AvaII GGWCC 1 cut(s) 468
BanII GRGCYC 1 cut(s) 550
Bbv12I GWGCWC 1 cut(s) 550
BccI CCATC 3 cut(s) 268, 305, 685
BciT130I CCWGG 1 cut(s) 195
BcoDI GTCTC 1 cut(s) 263
BisI GCNGC 1 cut(s) 75
BlsI GCNGC 1 cut(s) 76
Bme1390I CCNGG 1 cut(s) 195
Bme18I GGWCC 1 cut(s) 468
BmgT120I GGNCC 1 cut(s) 468
BmrFI CCNGG 1 cut(s) 195
BmsI GCATC 1 cut(s) 699
BpmI CTGGAG 2 cut(s) 398, 632
Bsa29I ATCGAT 1 cut(s) 300
BsaBI GATNNNNATC 1 cut(s) 713
BsaWI WCCGGW 1 cut(s) 720
Bsc4I CCNNNNNNNGG 1 cut(s) 610
Bse8I GATNNNNATC 1 cut(s) 713
BseBI CCWGG 1 cut(s) 195
BseCI ATCGAT 1 cut(s) 300
BseGI GGATG 2 cut(s) 8, 23
BseJI GATNNNNATC 1 cut(s) 713
BseLI CCNNNNNNNGG 1 cut(s) 610
BseMII CTCAG 1 cut(s) 647
BseRI GAGGAG 3 cut(s) 119, 611, 662
Bsh1236I CGCG 1 cut(s) 447
BshFI GGCC 2 cut(s) 74, 335
BshVI ATCGAT 1 cut(s) 300
BsiHKAI GWGCWC 1 cut(s) 550
BsiSI CCGG 2 cut(s) 178, 721
BslI CCNNNNNNNGG 1 cut(s) 610
BsmAI GTCTC 1 cut(s) 263
BsmBI CGTCTC 1 cut(s) 263
BsnI GGCC 2 cut(s) 74, 335
Bsp1286I GDGCHC 1 cut(s) 550
Bsp143I GATC 5 cut(s) 82, 253, 327, 383, 490
BspACI CCGC 4 cut(s) 75, 393, 466, 641
BspANI GGCC 2 cut(s) 74, 335
BspCNI CTCAG 1 cut(s) 648
BspDI ATCGAT 1 cut(s) 300
BspFNI CGCG 1 cut(s) 447
BspPI GGATC 1 cut(s) 485
BspQI GCTCTTC 1 cut(s) 538
BssMI GATC 5 cut(s) 82, 253, 327, 383, 490
Bst2UI CCWGG 1 cut(s) 195
Bst4CI ACNGT 2 cut(s) 49, 503
Bst6I CTCTTC 2 cut(s) 444, 538
BstC8I GCNNGC 1 cut(s) 550
BstDEI CTNAG 2 cut(s) 133, 656
BstF5I GGATG 2 cut(s) 8, 23
BstFNI CGCG 1 cut(s) 447
BstHHI GCGC 1 cut(s) 447
BstKTI GATC 5 cut(s) 85, 256, 330, 386, 493
BstMAI GTCTC 1 cut(s) 263
BstMBI GATC 5 cut(s) 82, 253, 327, 383, 490
BstNI CCWGG 1 cut(s) 195
BstNSI RCATGY 2 cut(s) 418, 610
BstSCI CCNGG 1 cut(s) 193
BstUI CGCG 1 cut(s) 447
BstX2I RGATCY 1 cut(s) 490
BstYI RGATCY 1 cut(s) 490
Bsu15I ATCGAT 1 cut(s) 300
BsuRI GGCC 2 cut(s) 74, 335
BsuTUI ATCGAT 1 cut(s) 300
BtgZI GCGATG 1 cut(s) 704
BtsCI GGATG 2 cut(s) 8, 23
Cac8I GCNNGC 1 cut(s) 550
CfoI GCGC 1 cut(s) 447
Cfr13I GGNCC 1 cut(s) 468
ClaI ATCGAT 1 cut(s) 300
Csp6I GTAC 4 cut(s) 226, 601, 652, 660
CspCI CAANNNNNGTGG 2 cut(s) 651, 686
CviAII CATG 7 cut(s) 174, 251, 262, 331, 415, 463, 607
CviJI RGCY 5 cut(s) 74, 296, 335, 548, 732
CviKI_1 RGCY 5 cut(s) 74, 296, 335, 548, 732
CviQI GTAC 4 cut(s) 226, 601, 652, 660
DdeI CTNAG 2 cut(s) 133, 656
DpnI GATC 5 cut(s) 84, 255, 329, 385, 492
DpnII GATC 5 cut(s) 82, 253, 327, 383, 490
EaeI YGGCCR 2 cut(s) 72, 333
Eam1104I CTCTTC 2 cut(s) 444, 538
EarI CTCTTC 2 cut(s) 444, 538
Ecl136II GAGCTC 1 cut(s) 548
Eco24I GRGCYC 1 cut(s) 550
Eco47I GGWCC 1 cut(s) 468
Eco53kI GAGCTC 1 cut(s) 548
EcoICRI GAGCTC 1 cut(s) 548
EcoRI GAATTC 1 cut(s) 506
EcoRII CCWGG 1 cut(s) 193
EcoT38I GRGCYC 1 cut(s) 550
Esp3I CGTCTC 1 cut(s) 263
FaeI CATG 7 cut(s) 177, 254, 265, 334, 418, 466, 610
FalI AAGNNNNNCTT 4 cut(s) 345, 377, 379, 411
FatI CATG 7 cut(s) 173, 250, 261, 330, 414, 462, 606
Fnu4HI GCNGC 1 cut(s) 75
FokI GGATG 1 cut(s) 10
FriOI GRGCYC 1 cut(s) 550
Fsp4HI GCNGC 1 cut(s) 75
GlaI GCGC 1 cut(s) 446
GluI GCNGC 1 cut(s) 75
GsuI CTGGAG 2 cut(s) 398, 632
HaeIII GGCC 2 cut(s) 74, 335
HapII CCGG 2 cut(s) 178, 721
HhaI GCGC 1 cut(s) 447
Hin1II CATG 7 cut(s) 177, 254, 265, 334, 418, 466, 610
Hin6I GCGC 1 cut(s) 445
HinP1I GCGC 1 cut(s) 445
HinfI GANTC 4 cut(s) 5, 479, 572, 677
HpaII CCGG 2 cut(s) 178, 721
Hpy188I TCNGA 2 cut(s) 577, 682
Hpy188III TCNNGA 3 cut(s) 86, 146, 511
Hpy99I CGWCG 1 cut(s) 152
HpyAV CCTTC 1 cut(s) 517
HpyCH4III ACNGT 2 cut(s) 49, 503
HpyCH4V TGCA 4 cut(s) 60, 188, 220, 538
HpyF3I CTNAG 2 cut(s) 133, 656
Hsp92II CATG 7 cut(s) 177, 254, 265, 334, 418, 466, 610
HspAI GCGC 1 cut(s) 445
Kzo9I GATC 5 cut(s) 82, 253, 327, 383, 490
LguI GCTCTTC 1 cut(s) 538
LmnI GCTCC 1 cut(s) 88
LpnPI CCDG 6 cut(s) 180, 191, 207, 362, 596, 668
LweI GCATC 1 cut(s) 699
MaeIII GTNAC 2 cut(s) 197, 357
MalI GATC 5 cut(s) 84, 255, 329, 385, 492
MboI GATC 5 cut(s) 82, 253, 327, 383, 490
MboII GAAGA 8 cut(s) 27, 170, 224, 283, 319, 461, 526, 555
MflI RGATCY 1 cut(s) 490
MhlI GDGCHC 1 cut(s) 550
MluCI AATT 6 cut(s) 61, 189, 425, 472, 506, 559
MmeI TCCRAC 1 cut(s) 518
MnlI CCTC 8 cut(s) 37, 140, 513, 571, 589, 607, 640, 694
MspI CCGG 2 cut(s) 178, 721
MspR9I CCNGG 1 cut(s) 195
MvaI CCWGG 1 cut(s) 195
MvnI CGCG 1 cut(s) 447
NdeII GATC 5 cut(s) 82, 253, 327, 383, 490
NlaIII CATG 7 cut(s) 177, 254, 265, 334, 418, 466, 610
NmuCI GTSAC 1 cut(s) 197
NspI RCATGY 2 cut(s) 418, 610
PciI ACATGT 1 cut(s) 414
PciSI GCTCTTC 1 cut(s) 538
PcsI WCGNNNNNNNCGW 1 cut(s) 686
PfeI GAWTC 4 cut(s) 5, 479, 572, 677
PflMI CCANNNNNTGG 1 cut(s) 610
PkrI GCNGC 1 cut(s) 76
PscI ACATGT 1 cut(s) 414
Psp124BI GAGCTC 1 cut(s) 550
Psp6I CCWGG 1 cut(s) 193
PspGI CCWGG 1 cut(s) 193
PspPI GGNCC 1 cut(s) 468
PsuI RGATCY 1 cut(s) 490
RsaI GTAC 4 cut(s) 227, 602, 653, 661
RsaNI GTAC 4 cut(s) 226, 601, 652, 660
SacI GAGCTC 1 cut(s) 550
SapI GCTCTTC 1 cut(s) 538
SatI GCNGC 1 cut(s) 75
Sau3AI GATC 5 cut(s) 82, 253, 327, 383, 490
Sau96I GGNCC 1 cut(s) 468
ScrFI CCNGG 1 cut(s) 195
SduI GDGCHC 1 cut(s) 550
SetI ASST 3 cut(s) 550, 657, 734
SfaNI GCATC 1 cut(s) 699
SinI GGWCC 1 cut(s) 468
Sse9I AATT 6 cut(s) 61, 189, 425, 472, 506, 559
SsiI CCGC 4 cut(s) 75, 393, 466, 641
SstI GAGCTC 1 cut(s) 550
StyD4I CCNGG 1 cut(s) 193
TaaI ACNGT 2 cut(s) 49, 503
TaqI TCGA 2 cut(s) 147, 300
TasI AATT 6 cut(s) 61, 189, 425, 472, 506, 559
TatI WGTACW 2 cut(s) 225, 659
TauI GCSGC 1 cut(s) 77
TfiI GAWTC 4 cut(s) 5, 479, 572, 677
TseFI GTSAC 1 cut(s) 197
Tsp45I GTSAC 1 cut(s) 197
TspDTI ATGAA 5 cut(s) 162, 225, 252, 299, 680
Van91I CCANNNNNTGG 1 cut(s) 610
VpaK11BI GGWCC 1 cut(s) 468
XapI RAATTY 1 cut(s) 506
XceI RCATGY 2 cut(s) 418, 610
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.