Rh5CG060500

No apical meristem-associated C-terminal domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0001696
Physical Location & Seq
Reverse (-)
4464475 .. 4466620
2146 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG060500.1

Sequence Viewer

Length: 1194 bp
ATGGATTCATCCCAAATATCATCATCCTCTCTTTCTTCAAATGGAACCGTTGAGTATTGCAATTCTGTCTTGACCGCATTTGATCGGGAGCAAGATTTGTTACTTCGTATGTGTGCTAACAACAATCTCCTCTTAGCAGAAAATCTCGACAATGAAGAAGATGATGCTCAATCATGTCGGAGAGAAGAAGATCTACAATTGTGCCATGTTTATCTTGATATTTCTCAATGTCCAATTAATGGTATTAACCAAAAAAAGGATGCACTATGGGAGAGGATTGCTGCTATCTACAATGAAGGCAAGTCCGAGGAAAGGAGTCGATCTGGTGGGTCGCTTCAAAGTCGATTTTCTGATCTATGCTTACCGGTCAGTAAACTTCGTGGTCATATTCGACAAATTGAGTACCAAAATCCAAGTGGTGCATCAGAGTCCTATATTTTCAAGAAAGCTAAGGAATCTCTCCTAGATGATTCAACTTATAAGAAGAAAAAGTTTCAATTTGACCATGTGTGGCCCATTCTAAAAAATGCTGAGAAATGGCTTGATAATGCTGCCATGACCGCTCCTAAACCTCATGAAGATGAGCAAGAGTACATCAACGATGAAGTTGCTTCACATGATCGTCCCATGGGAACGAGGATGGCAAAGATGAAAAGGAAAGCCACCGATGAGAAGAAAAAGAATTATGATAAGATCATGGCCGATAACCAAGCAATAAAAGAGTTACTTGAAAAAAGTATGCTGGAGAGATCAAGCTTCGCTTCCAAGTTTGACCATTACACGTCAAGCAAATTGGATATTCAACGTCAACGCGAAGAGAATAAAATCATGCTGACCAATTTGGATTCCATAACGGATCCAACAGACCGTGAATTCTTGAAGATGAGGAAGGCAGAAGTTATGCAAAGAAGAGCTCGTGAGTCTCAATCACAAGGATCACCACCTACTACATTTGACTATGGTAACTTTAGTAACCTTAACCAGTTTCAAAGTGGTTCTGAAGCTACATTTCATTCTGGAAATTTTGGTAGTCCTTTACAATTTTCAAGTGGATTCGGAGGAAGTGGTGGGAGTGGAGGAGTACCACATGCTGGAGGAAGTAGCGGTGGAGGAGTGCCTGAGTACAATGAAAGTGGTGGATTCGGAACAAGCGATGGTTATGGAGGAAGTGATGCTAATCTACCGGAATACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM-associated

Protein Analysis

397

Amino Acids

44.38

Weight (kDa)

5.38

Isoelectric Point (pI)

57.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM-associated PF14303 163 - 299 4.2e-10 No apical meristem-associated C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 480
AccB7I CCANNNNNTGG 2 cut(s) 239, 1091
AccBSI CCGCTC 1 cut(s) 563
AccII CGCG 1 cut(s) 813
AciI CCGC 3 cut(s) 75, 561, 1104
AclWI GGATC 3 cut(s) 851, 864, 943
AcoI YGGCCR 1 cut(s) 699
AcsI RAATTY 2 cut(s) 872, 1021
AcuI CTGAAG 1 cut(s) 1020
AfaI GTAC 4 cut(s) 404, 593, 1083, 1124
AfiI CCNNNNNNNGG 4 cut(s) 239, 256, 312, 1091
AflIII ACRYGT 1 cut(s) 780
AgeI ACCGGT 1 cut(s) 364
AjiI CACGTC 1 cut(s) 783
AluBI AGCT 4 cut(s) 449, 756, 914, 1004
AluI AGCT 4 cut(s) 449, 756, 914, 1004
Alw21I GWGCWC 1 cut(s) 916
Alw26I GTCTC 1 cut(s) 927
AlwI GGATC 3 cut(s) 851, 864, 943
AoxI GGCC 2 cut(s) 512, 699
ApeKI GCWGC 2 cut(s) 281, 551
ApoI RAATTY 2 cut(s) 872, 1021
AseI ATTAAT 1 cut(s) 237
AsiGI ACCGGT 1 cut(s) 364
AspS9I GGNCC 1 cut(s) 513
AsuHPI GGTGA 1 cut(s) 930
BamHI GGATCC 1 cut(s) 856
BanII GRGCYC 1 cut(s) 916
BarI GAAGNNNNNNTAC 2 cut(s) 177, 209
BauI CACGAG 1 cut(s) 915
Bbv12I GWGCWC 1 cut(s) 916
BbvI GCAGC 2 cut(s) 268, 538
BccI CCATC 2 cut(s) 634, 1148
BcgI CGANNNNNNTGC 2 cut(s) 590, 624
BcoDI GTCTC 1 cut(s) 927
BfaI CTAG 2 cut(s) 464, 1192
BglII AGATCT 1 cut(s) 190
BisI GCNGC 2 cut(s) 282, 552
BlsI GCNGC 2 cut(s) 283, 553
BmgBI CACGTC 1 cut(s) 783
BmgT120I GGNCC 1 cut(s) 513
BmiI GGNNCC 2 cut(s) 46, 858
BmsI GCATC 4 cut(s) 154, 250, 431, 1162
BpmI CTGGAG 2 cut(s) 764, 1113
Bpu10I CCTNAGC 1 cut(s) 450
BsaBI GATNNNNATC 1 cut(s) 1176
BsaJI CCNNGG 2 cut(s) 306, 627
BsaWI WCCGGW 2 cut(s) 364, 1183
Bsc4I CCNNNNNNNGG 4 cut(s) 239, 256, 312, 1091
Bse118I RCCGGY 1 cut(s) 364
Bse1I ACTGG 1 cut(s) 982
Bse8I GATNNNNATC 1 cut(s) 1176
BseDI CCNNGG 2 cut(s) 306, 627
BseGI GGATG 4 cut(s) 8, 23, 265, 645
BseJI GATNNNNATC 1 cut(s) 1176
BseLI CCNNNNNNNGG 4 cut(s) 239, 256, 312, 1091
BseMII CTCAG 2 cut(s) 522, 1110
BseNI ACTGG 1 cut(s) 982
BseRI GAGGAG 3 cut(s) 119, 1092, 1125
BseXI GCAGC 2 cut(s) 268, 538
Bsh1236I CGCG 1 cut(s) 813
BshFI GGCC 2 cut(s) 514, 701
BshTI ACCGGT 1 cut(s) 364
BsiHKAI GWGCWC 1 cut(s) 916
BsiSI CCGG 2 cut(s) 365, 1184
BslFI GGGAC 1 cut(s) 609
BslI CCNNNNNNNGG 4 cut(s) 239, 256, 312, 1091
BsmAI GTCTC 1 cut(s) 927
BsmFI GGGAC 1 cut(s) 609
BsnI GGCC 2 cut(s) 514, 701
Bsp1286I GDGCHC 1 cut(s) 916
Bsp143I GATC 9 cut(s) 82, 190, 320, 352, 619, 693, 749, 856, 935
Bsp19I CCATGG 1 cut(s) 627
BspACI CCGC 3 cut(s) 75, 561, 1104
BspANI GGCC 2 cut(s) 514, 701
BspCNI CTCAG 2 cut(s) 523, 1111
BspFNI CGCG 1 cut(s) 813
BspHI TCATGA 1 cut(s) 574
BspLI GGNNCC 2 cut(s) 46, 858
BspPI GGATC 3 cut(s) 851, 864, 943
BspQI GCTCTTC 1 cut(s) 904
BsrBI CCGCTC 1 cut(s) 563
BsrFI RCCGGY 1 cut(s) 364
BsrI ACTGG 1 cut(s) 982
BssAI RCCGGY 1 cut(s) 364
BssECI CCNNGG 2 cut(s) 306, 627
BssMI GATC 9 cut(s) 82, 190, 320, 352, 619, 693, 749, 856, 935
BssSI CACGAG 1 cut(s) 915
BssT1I CCWWGG 1 cut(s) 627
Bst2BI CACGAG 1 cut(s) 915
Bst4CI ACNGT 2 cut(s) 49, 869
Bst6I CTCTTC 2 cut(s) 810, 904
BstDEI CTNAG 4 cut(s) 133, 450, 531, 1119
BstDSI CCRYGG 1 cut(s) 627
BstF5I GGATG 4 cut(s) 8, 23, 265, 645
BstFNI CGCG 1 cut(s) 813
BstKTI GATC 9 cut(s) 85, 193, 323, 355, 622, 696, 752, 859, 938
BstMAI GTCTC 1 cut(s) 927
BstMBI GATC 9 cut(s) 82, 190, 320, 352, 619, 693, 749, 856, 935
BstMWI GCNNNNNNNGC 1 cut(s) 560
BstNSI RCATGY 1 cut(s) 1091
BstUI CGCG 1 cut(s) 813
BstV1I GCAGC 2 cut(s) 268, 538
BstX2I RGATCY 2 cut(s) 190, 856
BstYI RGATCY 2 cut(s) 190, 856
BsuRI GGCC 2 cut(s) 514, 701
BtgI CCRYGG 1 cut(s) 627
BtgZI GCGATG 1 cut(s) 1167
BtrI CACGTC 1 cut(s) 783
BtsCI GGATG 4 cut(s) 8, 23, 265, 645
CciI TCATGA 1 cut(s) 574
Cfr10I RCCGGY 1 cut(s) 364
Cfr13I GGNCC 1 cut(s) 513
Csp6I GTAC 4 cut(s) 403, 592, 1082, 1123
CspAI ACCGGT 1 cut(s) 364
CspCI CAANNNNNGTGG 2 cut(s) 1114, 1149
CviJI RGCY 8 cut(s) 449, 514, 541, 662, 701, 756, 914, 1004
CviKI_1 RGCY 8 cut(s) 449, 514, 541, 662, 701, 756, 914, 1004
CviQI GTAC 4 cut(s) 403, 592, 1082, 1123
DdeI CTNAG 4 cut(s) 133, 450, 531, 1119
DpnI GATC 9 cut(s) 84, 192, 322, 354, 621, 695, 751, 858, 937
DpnII GATC 9 cut(s) 82, 190, 320, 352, 619, 693, 749, 856, 935
EaeI YGGCCR 1 cut(s) 699
Eam1104I CTCTTC 2 cut(s) 810, 904
EarI CTCTTC 2 cut(s) 810, 904
Ecl136II GAGCTC 1 cut(s) 914
Eco130I CCWWGG 1 cut(s) 627
Eco24I GRGCYC 1 cut(s) 916
Eco53kI GAGCTC 1 cut(s) 914
Eco57I CTGAAG 1 cut(s) 1020
EcoICRI GAGCTC 1 cut(s) 914
EcoRI GAATTC 1 cut(s) 872
EcoT14I CCWWGG 1 cut(s) 627
EcoT38I GRGCYC 1 cut(s) 916
ErhI CCWWGG 1 cut(s) 627
FalI AAGNNNNNCTT 4 cut(s) 711, 743, 745, 777
FaqI GGGAC 1 cut(s) 609
Fnu4HI GCNGC 2 cut(s) 282, 552
FokI GGATG 3 cut(s) 10, 272, 652
FriOI GRGCYC 1 cut(s) 916
Fsp4HI GCNGC 2 cut(s) 282, 552
FspBI CTAG 2 cut(s) 464, 1192
GluI GCNGC 2 cut(s) 282, 552
GsuI CTGGAG 2 cut(s) 764, 1113
HaeIII GGCC 2 cut(s) 514, 701
HapII CCGG 2 cut(s) 365, 1184
HincII GTYRAC 1 cut(s) 809
HindII GTYRAC 1 cut(s) 809
HindIII AAGCTT 1 cut(s) 754
HinfI GANTC 9 cut(s) 5, 316, 428, 455, 470, 845, 920, 1053, 1140
HpaII CCGG 2 cut(s) 365, 1184
HphI GGTGA 1 cut(s) 930
Hpy166II GTNNAC 2 cut(s) 374, 809
Hpy188I TCNGA 7 cut(s) 180, 307, 352, 427, 1000, 1058, 1145
Hpy188III TCNNGA 9 cut(s) 70, 86, 146, 215, 442, 575, 877, 917, 1017
Hpy8I GTNNAC 2 cut(s) 374, 809
HpyAV CCTTC 2 cut(s) 290, 883
HpyCH4III ACNGT 2 cut(s) 49, 869
HpyCH4IV ACGT 2 cut(s) 782, 805
HpyCH4V TGCA 4 cut(s) 60, 263, 422, 904
HpyF10VI GCNNNNNNNGC 1 cut(s) 560
HpyF3I CTNAG 4 cut(s) 133, 450, 531, 1119
HpySE526I ACGT 2 cut(s) 782, 805
Kzo9I GATC 9 cut(s) 82, 190, 320, 352, 619, 693, 749, 856, 935
LguI GCTCTTC 1 cut(s) 904
LmnI GCTCC 2 cut(s) 88, 568
LpnPI CCDG 7 cut(s) 309, 378, 728, 995, 1002, 1077, 1131
Lsp1109I GCAGC 2 cut(s) 268, 538
LweI GCATC 4 cut(s) 154, 250, 431, 1162
MaeI CTAG 2 cut(s) 464, 1192
MaeII ACGT 2 cut(s) 782, 805
MaeIII GTNAC 4 cut(s) 99, 723, 962, 971
MalI GATC 9 cut(s) 84, 192, 322, 354, 621, 695, 751, 858, 937
MbiI CCGCTC 1 cut(s) 563
MboI GATC 9 cut(s) 82, 190, 320, 352, 619, 693, 749, 856, 935
MfeI CAATTG 1 cut(s) 197
MflI RGATCY 2 cut(s) 190, 856
MhlI GDGCHC 1 cut(s) 916
MlyI GAGTC 3 cut(s) 325, 437, 929
MmeI TCCRAC 2 cut(s) 158, 884
MseI TTAA 3 cut(s) 237, 246, 978
MslI CAYNNNNRTG 1 cut(s) 579
MspI CCGG 2 cut(s) 365, 1184
MunI CAATTG 1 cut(s) 197
MvnI CGCG 1 cut(s) 813
MwoI GCNNNNNNNGC 1 cut(s) 560
NcoI CCATGG 1 cut(s) 627
NdeII GATC 9 cut(s) 82, 190, 320, 352, 619, 693, 749, 856, 935
NlaIV GGNNCC 2 cut(s) 46, 858
NspI RCATGY 1 cut(s) 1091
PagI TCATGA 1 cut(s) 574
PciSI GCTCTTC 1 cut(s) 904
PcsI WCGNNNNNNNCGW 1 cut(s) 1149
PfeI GAWTC 6 cut(s) 5, 455, 470, 845, 1053, 1140
PflMI CCANNNNNTGG 2 cut(s) 239, 1091
PinAI ACCGGT 1 cut(s) 364
PkrI GCNGC 2 cut(s) 283, 553
PleI GAGTC 3 cut(s) 324, 436, 928
PpsI GAGTC 3 cut(s) 324, 436, 928
PshBI ATTAAT 1 cut(s) 237
PsiI TTATAA 1 cut(s) 480
Psp124BI GAGCTC 1 cut(s) 916
PspN4I GGNNCC 2 cut(s) 46, 858
PspPI GGNCC 1 cut(s) 513
PsuI RGATCY 2 cut(s) 190, 856
RsaI GTAC 4 cut(s) 404, 593, 1083, 1124
RsaNI GTAC 4 cut(s) 403, 592, 1082, 1123
RseI CAYNNNNRTG 1 cut(s) 579
SacI GAGCTC 1 cut(s) 916
SapI GCTCTTC 1 cut(s) 904
SaqAI TTAA 3 cut(s) 237, 246, 978
SatI GCNGC 2 cut(s) 282, 552
Sau3AI GATC 9 cut(s) 82, 190, 320, 352, 619, 693, 749, 856, 935
Sau96I GGNCC 1 cut(s) 513
SchI GAGTC 3 cut(s) 325, 437, 929
SduI GDGCHC 1 cut(s) 916
SetI ASST 9 cut(s) 451, 574, 758, 785, 808, 916, 946, 978, 1006
SfaNI GCATC 4 cut(s) 154, 250, 431, 1162
SmiMI CAYNNNNRTG 1 cut(s) 579
SsiI CCGC 3 cut(s) 75, 561, 1104
SspMI CTAG 2 cut(s) 464, 1192
SstI GAGCTC 1 cut(s) 916
StyI CCWWGG 1 cut(s) 627
TaaI ACNGT 2 cut(s) 49, 869
TaiI ACGT 2 cut(s) 785, 808
TaqI TCGA 4 cut(s) 147, 319, 343, 391
TatI WGTACW 2 cut(s) 591, 1122
TfiI GAWTC 6 cut(s) 5, 455, 470, 845, 1053, 1140
Tru1I TTAA 3 cut(s) 237, 246, 978
Tru9I TTAA 3 cut(s) 237, 246, 978
TseI GCWGC 2 cut(s) 281, 551
TspDTI ATGAA 7 cut(s) 168, 309, 591, 618, 665, 1001, 1143
TspGWI ACGGA 1 cut(s) 869
Van91I CCANNNNNTGG 2 cut(s) 239, 1091
VspI ATTAAT 1 cut(s) 237
XapI RAATTY 2 cut(s) 872, 1021
XceI RCATGY 1 cut(s) 1091
XcmI CCANNNNNNNNNTGG 2 cut(s) 413, 989
XspI CTAG 2 cut(s) 464, 1192
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.