Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0001696

Physical Location & Seq

Genomic Coordinates Reverse (-)

25833151 .. 25838294

Gene Structure 5144 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g35255.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGTCGTTTAAAATCTACACTGATGCAAAAACCATTCAGGCCGACACCGTCATCGTAAAGCGGCTCGTGTTCCCTTGGCGCCACCACTGCCATCCGCTTGGAATTCGAAGTCGAGCCTCCACCCTCGACCCTCGACCCTCCGCTACCTCCGCCCTTGACCCTCCCCGCCAAGAAAGGGTCGCCGCCGTCCCGATTCCTCTAGACCCAGGCCAACGTCAAGCGTCTCCGGTCACTGCCATGGATGTCGTCTATGCTCTCAAGAGGCAGGGAAGGACCCTCCACAGTTTCGGGGTAGTGGGGCGAGGATCACTGAATTGTGGAATCAAGATAATTAAGGATGAGAATCAGACGAGAAGCTCCAAGTGTCTTCAAAGTCGATTTTCATATCTTACTTATTGTGTAAGCAAATTTCGTGGTGATGTTCGTCAAGTGGAGATTGACAATCCAAGCGATACAAATGAGAAAGATATTGATGCTGAAAAGTGGGTCGCTACTGGTAGAAGTTCAACAAGACCACAACAAAGAAATGATTCAAGTGAAGGATATGAATCAACATCTCGCACATCACAATCGTTAAGTACACTACCATTTGATGTCGATTTAAATGCAGATGAAGACGAACAAGAGCTATATAATGATGAACTCAGCACGTCTCGTCGACCCATTGGTGTAAAAAAATCAAAGCTGAAGAGGAAAGAGGCCAATGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Plant_tran

Protein Analysis

237

Amino Acids

26.54

Weight (kDa)

9.15

Isoelectric Point (pI)

49.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001696)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24380 AT1G66235 AT1G66235 AT2G13760 AT4G10230
fragaria_vesca	FvH4_1g29460 FvH4_1g29461 FvH4_2g00671 FvH4_2g02401 FvH4_4g12912 FvH4_5g16793 FvH4_5g35255 FvH4_6g21850
rosa_laevigata	RLG00000001802 RLG00000007297 RLG00000009939 RLG00000014129 RLG00000020485 RLG00000020868 RLG00000022589 RLG00000026627
rosa_multiflora	Rmu_co8293213.1_g000001 Rmu_co8323109.1_g000001 Rmu_sc0000149.1_g000032 Rmu_sc0000775.1_g000012 Rmu_sc0000776.1_g000009 Rmu_sc0001872.1_g000007 Rmu_sc0002666.1_g000024 Rmu_sc0003767.1_g000003 Rmu_sc0006410.1_g000019 Rmu_sc0006797.1_g000002 Rmu_sc0014826.1_g000002 Rmu_sc0015243.1_g000005 Rmu_sc0033419.1_g000002
rosa_roxburghii	Rroxscaffold_4G00296630 Rroxscaffold_7G00202090
rosa_samantha	Rh1BG046500 Rh2CG257500 Rh2CG423800 Rh2CG423900 Rh4BG046900 Rh4BG047000 Rh4BG078300 Rh5CG060500 Rh5CG341400 Rh6DG172800 Rh7BG334200
rosa_wichuraiana	Rw7G024310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	78
AccI	GTMKAC	1 cut(s)	658
AciI	CCGC	6 cut(s)	61, 95, 141, 150, 166, 183
AclWI	GGATC	1 cut(s)	313
AcsI	RAATTY	2 cut(s)	102, 407
AcuI	CTGAAG	1 cut(s)	707
AcyI	GRCGYC	1 cut(s)	79
AfaI	GTAC	1 cut(s)	580
AfiI	CCNNNNNNNGG	1 cut(s)	175
AgsI	TTSAA	3 cut(s)	371, 507, 534
AjiI	CACGTC	1 cut(s)	651
AjnI	CCWGG	1 cut(s)	205
AluBI	AGCT	3 cut(s)	357, 628, 685
AluI	AGCT	3 cut(s)	357, 628, 685
Alw26I	GTCTC	2 cut(s)	228, 657
AlwI	GGATC	1 cut(s)	313
AoxI	GGCC	3 cut(s)	39, 208, 699
ApoI	RAATTY	2 cut(s)	102, 407
Asp700I	GAANNNNTTC	1 cut(s)	529
AspLEI	GCGC	1 cut(s)	81
AspS9I	GGNCC	1 cut(s)	273
AsuHPI	GGTGA	1 cut(s)	428
AsuII	TTCGAA	1 cut(s)	106
AvaII	GGWCC	1 cut(s)	273
BanI	GGYRCC	1 cut(s)	78
BauI	CACGAG	1 cut(s)	65
BbsI	GAAGAC	2 cut(s)	359, 621
BccI	CCATC	1 cut(s)	99
BceAI	ACGGC	1 cut(s)	170
BcgI	CGANNNNNNTGC	2 cut(s)	587, 621
BciT130I	CCWGG	1 cut(s)	207
BcoDI	GTCTC	2 cut(s)	228, 657
BfaI	CTAG	1 cut(s)	200
BfoI	RGCGCY	1 cut(s)	82
BisI	GCNGC	2 cut(s)	62, 183
BlsI	GCNGC	2 cut(s)	63, 184
Bme1390I	CCNGG	1 cut(s)	207
Bme18I	GGWCC	1 cut(s)	273
BmgBI	CACGTC	1 cut(s)	651
BmgT120I	GGNCC	1 cut(s)	273
BmiI	GGNNCC	2 cut(s)	80, 275
BmrFI	CCNGG	1 cut(s)	207
BmsI	GCATC	2 cut(s)	13, 463
BpiI	GAAGAC	2 cut(s)	359, 621
Bpu14I	TTCGAA	1 cut(s)	106
BpuEI	CTTGAG	1 cut(s)	242
BsaBI	GATNNNNATC	2 cut(s)	342, 547
BsaHI	GRCGYC	1 cut(s)	79
BsaJI	CCNNGG	3 cut(s)	74, 205, 237
BsaWI	WCCGGW	1 cut(s)	226
Bsc4I	CCNNNNNNNGG	1 cut(s)	175
Bse1I	ACTGG	1 cut(s)	499
Bse8I	GATNNNNATC	2 cut(s)	342, 547
BseBI	CCWGG	1 cut(s)	207
BseDI	CCNNGG	3 cut(s)	74, 205, 237
BseGI	GGATG	3 cut(s)	91, 247, 343
BseJI	GATNNNNATC	2 cut(s)	342, 547
BseLI	CCNNNNNNNGG	1 cut(s)	175
BseMII	CTCAG	1 cut(s)	658
BseNI	ACTGG	1 cut(s)	499
BshFI	GGCC	3 cut(s)	41, 210, 701
BshNI	GGYRCC	1 cut(s)	78
BsiSI	CCGG	1 cut(s)	227
BslFI	GGGAC	1 cut(s)	173
BslI	CCNNNNNNNGG	1 cut(s)	175
BsmAI	GTCTC	2 cut(s)	228, 657
BsmBI	CGTCTC	2 cut(s)	228, 657
BsmFI	GGGAC	1 cut(s)	173
BsnI	GGCC	3 cut(s)	41, 210, 701
Bsp119I	TTCGAA	1 cut(s)	106
Bsp143I	GATC	1 cut(s)	305
Bsp19I	CCATGG	1 cut(s)	237
BspACI	CCGC	6 cut(s)	61, 95, 141, 150, 166, 183
BspANI	GGCC	3 cut(s)	41, 210, 701
BspCNI	CTCAG	1 cut(s)	657
BspLI	GGNNCC	2 cut(s)	80, 275
BspPI	GGATC	1 cut(s)	313
BspT104I	TTCGAA	1 cut(s)	106
BspT107I	GGYRCC	1 cut(s)	78
BsrI	ACTGG	1 cut(s)	499
BssECI	CCNNGG	3 cut(s)	74, 205, 237
BssMI	GATC	1 cut(s)	305
BssNI	GRCGYC	1 cut(s)	79
BssSI	CACGAG	1 cut(s)	65
BssT1I	CCWWGG	2 cut(s)	74, 237
Bst2BI	CACGAG	1 cut(s)	65
Bst2UI	CCWGG	1 cut(s)	207
Bst4CI	ACNGT	2 cut(s)	49, 284
Bst6I	CTCTTC	1 cut(s)	683
BstACI	GRCGYC	1 cut(s)	79
BstBI	TTCGAA	1 cut(s)	106
BstDEI	CTNAG	1 cut(s)	644
BstDSI	CCRYGG	1 cut(s)	237
BstF5I	GGATG	3 cut(s)	91, 247, 343
BstH2I	RGCGCY	1 cut(s)	82
BstHHI	GCGC	1 cut(s)	81
BstKTI	GATC	1 cut(s)	308
BstMAI	GTCTC	2 cut(s)	228, 657
BstMBI	GATC	1 cut(s)	305
BstMWI	GCNNNNNNNGC	2 cut(s)	87, 149
BstNI	CCWGG	1 cut(s)	207
BstSCI	CCNGG	1 cut(s)	205
BstV2I	GAAGAC	2 cut(s)	359, 621
BstXI	CCANNNNNNTGG	1 cut(s)	98
BsuRI	GGCC	3 cut(s)	41, 210, 701
BtgI	CCRYGG	1 cut(s)	237
BtrI	CACGTC	1 cut(s)	651
BtsCI	GGATG	3 cut(s)	91, 247, 343
BtsI	GCAGTG	2 cut(s)	85, 231
BtsIMutI	CAGTG	4 cut(s)	18, 85, 231, 308
CfoI	GCGC	1 cut(s)	81
Cfr13I	GGNCC	1 cut(s)	273
CseI	GACGC	1 cut(s)	210
Csp6I	GTAC	1 cut(s)	579
CspCI	CAANNNNNGTGG	2 cut(s)	394, 429
CviAII	CATG	1 cut(s)	238
CviJI	RGCY	8 cut(s)	41, 64, 116, 210, 357, 628, 685, 701
CviKI_1	RGCY	8 cut(s)	41, 64, 116, 210, 357, 628, 685, 701
CviQI	GTAC	1 cut(s)	579
DdeI	CTNAG	1 cut(s)	644
DinI	GGCGCC	1 cut(s)	80
DpnI	GATC	1 cut(s)	307
DpnII	GATC	1 cut(s)	305
DraI	TTTAAA	2 cut(s)	10, 603
Eam1104I	CTCTTC	1 cut(s)	683
EarI	CTCTTC	1 cut(s)	683
EciI	GGCGGA	1 cut(s)	139
Eco130I	CCWWGG	2 cut(s)	74, 237
Eco47I	GGWCC	1 cut(s)	273
Eco57I	CTGAAG	1 cut(s)	707
EcoO109I	RGGNCCY	1 cut(s)	273
EcoRI	GAATTC	1 cut(s)	102
EcoRII	CCWGG	1 cut(s)	205
EcoT14I	CCWWGG	2 cut(s)	74, 237
EgeI	GGCGCC	1 cut(s)	80
EheI	GGCGCC	1 cut(s)	80
ErhI	CCWWGG	2 cut(s)	74, 237
Esp3I	CGTCTC	2 cut(s)	228, 657
FaeI	CATG	1 cut(s)	241
FaiI	YATR	6 cut(s)	239, 252, 385, 546, 631, 633
FaqI	GGGAC	1 cut(s)	173
FatI	CATG	1 cut(s)	237
FauI	CCCGC	1 cut(s)	173
FblI	GTMKAC	1 cut(s)	658
Fnu4HI	GCNGC	2 cut(s)	62, 183
FokI	GGATG	3 cut(s)	78, 254, 350
Fsp4HI	GCNGC	2 cut(s)	62, 183
FspBI	CTAG	1 cut(s)	200
GlaI	GCGC	1 cut(s)	80
GluI	GCNGC	2 cut(s)	62, 183
HaeII	RGCGCY	1 cut(s)	82
HaeIII	GGCC	3 cut(s)	41, 210, 701
HapII	CCGG	1 cut(s)	227
HgaI	GACGC	1 cut(s)	210
HhaI	GCGC	1 cut(s)	81
Hin1I	GRCGYC	1 cut(s)	79
Hin1II	CATG	1 cut(s)	241
Hin6I	GCGC	1 cut(s)	79
HinP1I	GCGC	1 cut(s)	79
HincII	GTYRAC	1 cut(s)	659
HindII	GTYRAC	1 cut(s)	659
HinfI	GANTC	5 cut(s)	193, 321, 343, 530, 548
HpaII	CCGG	1 cut(s)	227
HphI	GGTGA	1 cut(s)	428
Hpy166II	GTNNAC	2 cut(s)	581, 659
Hpy188I	TCNGA	1 cut(s)	348
Hpy188III	TCNNGA	4 cut(s)	190, 200, 259, 325
Hpy8I	GTNNAC	2 cut(s)	581, 659
Hpy99I	CGWCG	1 cut(s)	660
HpyAV	CCTTC	2 cut(s)	264, 533
HpyCH4III	ACNGT	2 cut(s)	49, 284
HpyCH4IV	ACGT	2 cut(s)	214, 650
HpyCH4V	TGCA	2 cut(s)	26, 608
HpyF10VI	GCNNNNNNNGC	2 cut(s)	87, 149
HpyF3I	CTNAG	1 cut(s)	644
HpySE526I	ACGT	2 cut(s)	214, 650
Hsp92I	GRCGYC	1 cut(s)	79
Hsp92II	CATG	1 cut(s)	241
HspAI	GCGC	1 cut(s)	79
KasI	GGCGCC	1 cut(s)	78
Kzo9I	GATC	1 cut(s)	305
LmnI	GCTCC	1 cut(s)	362
LpnPI	CCDG	6 cut(s)	23, 192, 219, 240, 251, 480
LweI	GCATC	2 cut(s)	13, 463
MaeI	CTAG	1 cut(s)	200
MaeII	ACGT	2 cut(s)	214, 650
MaeIII	GTNAC	1 cut(s)	229
MalI	GATC	1 cut(s)	307
MboI	GATC	1 cut(s)	305
MboII	GAAGA	3 cut(s)	359, 626, 700
MluCI	AATT	4 cut(s)	102, 313, 330, 407
Mly113I	GGCGCC	1 cut(s)	79
MroXI	GAANNNNTTC	1 cut(s)	529
MseI	TTAA	4 cut(s)	9, 333, 575, 602
MslI	CAYNNNNRTG	1 cut(s)	236
MspI	CCGG	1 cut(s)	227
MspR9I	CCNGG	1 cut(s)	207
MvaI	CCWGG	1 cut(s)	207
MwoI	GCNNNNNNNGC	2 cut(s)	87, 149
NarI	GGCGCC	1 cut(s)	79
NcoI	CCATGG	1 cut(s)	237
NdeII	GATC	1 cut(s)	305
NlaIII	CATG	1 cut(s)	241
NlaIV	GGNNCC	2 cut(s)	80, 275
NmuCI	GTSAC	1 cut(s)	229
NspV	TTCGAA	1 cut(s)	106
PdmI	GAANNNNTTC	1 cut(s)	529
PfeI	GAWTC	5 cut(s)	193, 321, 343, 530, 548
PflFI	GACNNNGTC	1 cut(s)	47
PkrI	GCNGC	2 cut(s)	63, 184
PluTI	GGCGCC	1 cut(s)	82
PpuMI	RGGWCCY	1 cut(s)	273
Psp5II	RGGWCCY	1 cut(s)	273
Psp6I	CCWGG	1 cut(s)	205
PspGI	CCWGG	1 cut(s)	205
PspN4I	GGNNCC	2 cut(s)	80, 275
PspPI	GGNCC	1 cut(s)	273
PspPPI	RGGWCCY	1 cut(s)	273
PsyI	GACNNNGTC	1 cut(s)	47
RsaI	GTAC	1 cut(s)	580
RsaNI	GTAC	1 cut(s)	579
RseI	CAYNNNNRTG	1 cut(s)	236
SalI	GTCGAC	1 cut(s)	657
SaqAI	TTAA	4 cut(s)	9, 333, 575, 602
SatI	GCNGC	2 cut(s)	62, 183
Sau3AI	GATC	1 cut(s)	305
Sau96I	GGNCC	1 cut(s)	273
ScrFI	CCNGG	1 cut(s)	207
SetI	ASST	6 cut(s)	149, 217, 359, 630, 653, 687
SfaNI	GCATC	2 cut(s)	13, 463
SfoI	GGCGCC	1 cut(s)	80
SfuI	TTCGAA	1 cut(s)	106
SinI	GGWCC	1 cut(s)	273
SmiI	ATTTAAAT	1 cut(s)	603
SmiMI	CAYNNNNRTG	1 cut(s)	236
SmlI	CTYRAG	1 cut(s)	257
SmoI	CTYRAG	1 cut(s)	257
Sse9I	AATT	4 cut(s)	102, 313, 330, 407
SsiI	CCGC	6 cut(s)	61, 95, 141, 150, 166, 183
SspDI	GGCGCC	1 cut(s)	78
SspMI	CTAG	1 cut(s)	200
StyD4I	CCNGG	1 cut(s)	205
StyI	CCWWGG	2 cut(s)	74, 237
SwaI	ATTTAAAT	1 cut(s)	603
TaaI	ACNGT	2 cut(s)	49, 284
TaiI	ACGT	2 cut(s)	217, 653
TaqI	TCGA	7 cut(s)	106, 112, 126, 133, 376, 597, 658
TasI	AATT	4 cut(s)	102, 313, 330, 407
TatI	WGTACW	1 cut(s)	578
TauI	GCSGC	2 cut(s)	64, 185
TfiI	GAWTC	5 cut(s)	193, 321, 343, 530, 548
Tru1I	TTAA	4 cut(s)	9, 333, 575, 602
Tru9I	TTAA	4 cut(s)	9, 333, 575, 602
TscAI	CASTG	4 cut(s)	25, 92, 238, 315
TseFI	GTSAC	1 cut(s)	229
Tsp45I	GTSAC	1 cut(s)	229
TspDTI	ATGAA	4 cut(s)	372, 561, 627, 654
TspRI	CASTG	4 cut(s)	25, 92, 238, 315
Tth111I	GACNNNGTC	1 cut(s)	47
VpaK11BI	GGWCC	1 cut(s)	273
XapI	RAATTY	2 cut(s)	102, 407
XbaI	TCTAGA	1 cut(s)	199
XmiI	GTMKAC	1 cut(s)	658
XmnI	GAANNNNTTC	1 cut(s)	529
XspI	CTAG	1 cut(s)	200

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.