AT1G48195

zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0000602
Physical Location & Seq
Forward (+)
17796258 .. 17796784
527 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G48195.1

Sequence Viewer

Length: 249 bp
ATGTCTGAAGAAAAATTCCCAGAACGTCCAGGCGAACCAGAGTGCAGCTATTATCTTAGAACTGGAAACTGTTATCTGAAACAAAACTGCAAATACCATCACCCGAAGAATATAACGCCGAGCGAGCCTCAATGTACTCTCAATGACAAGGGCTTACCATTAAGACCTGGTCAAGCCATTTGCCCGCATTACAGTCGCTTCGGCATTTGCAGATCCGGTCCGACTTGTAAATTCGACCATTTTACCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-CCCH

Protein Analysis

82

Amino Acids

9.45

Weight (kDa)

8.51

Isoelectric Point (pI)

78.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-CCCH PF00642 57 - 80 3.3e-07 Zinc finger C-x8-C-x5-C-x3-H type (and similar)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000602)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G48195 AT3G48440 AT5G63260 AT5G63260
fragaria_vesca FvH4_5g07100 FvH4_5g07100 FvH4_5g07100 FvH4_5g07100 FvH4_5g07100 FvH4_5g07100 FvH4_5g07100
malus_domestica MD06G1158800.v1.1 MD06G1159000.v1.1 MD06G1159200.v1.1 MD14G1165100.v1.1 MD14G1165300.v1.1 MD14G1165400.v1.1 MD14G1165500.v1.1
prunus_persica Prupe.5G158300_v2.0.a1 Prupe.5G158300_v2.0.a1 Prupe.5G158400_v2.0.a1 Prupe.5G158400_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158600_v2.0.a1 Prupe.5G158700_v2.0.a1 Prupe.5G158800_v2.0.a1 Prupe.5G158900_v2.0.a1 Prupe.5G159000_v2.0.a1 Prupe.5G159100_v2.0.a1 Prupe.5G159100_v2.0.a1
pyrus_communis pycom02g00910 pycom06g14200 pycom14g13760 pycom14g13790 pycom14g13800
rosa_chinensis RchiOBHm_Chr5g0019351 RchiOBHm_Chr5g0022771 RchiOBHm_Chr7g0191441 RchiOBHm_Chr7g0191531
rosa_laevigata RLG00000004449 RLG00000032440
rosa_multiflora Rmu_sc0001809.1_g000062 Rmu_sc0005292.1_g000027
rosa_roxburghii Rroxscaffold_1G00074260 Rroxscaffold_6G00390280 Rroxscaffold_7G00168660
rosa_rugosa Rorug05G0049600 Rorug05G0049700 Rorug05G0049800 Rorug06G0510400
rosa_samantha Rh5CG151400 Rh5DG140300 Rh7AG118400 Rh7BG120400 Rh7CG123200 Rh7DG121300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 185
AclWI GGATC 1 cut(s) 207
AcsI RAATTY 2 cut(s) 14, 230
AcuI CTGAAG 1 cut(s) 27
AfaI GTAC 1 cut(s) 136
AjnI CCWGG 2 cut(s) 28, 166
AluBI AGCT 1 cut(s) 48
AluI AGCT 1 cut(s) 48
AlwI GGATC 1 cut(s) 207
ApeKI GCWGC 1 cut(s) 45
ApoI RAATTY 2 cut(s) 14, 230
AspS9I GGNCC 1 cut(s) 218
AsuHPI GGTGA 1 cut(s) 92
AvaII GGWCC 1 cut(s) 218
BbvI GCAGC 1 cut(s) 57
BccI CCATC 1 cut(s) 105
BcgI CGANNNNNNTGC 2 cut(s) 176, 210
BciT130I CCWGG 2 cut(s) 30, 168
BisI GCNGC 1 cut(s) 46
BlsI GCNGC 1 cut(s) 47
Bme1390I CCNGG 2 cut(s) 30, 168
Bme18I GGWCC 1 cut(s) 218
BmgT120I GGNCC 1 cut(s) 218
BmrFI CCNGG 2 cut(s) 30, 168
BplI GAGNNNNNCTC 2 cut(s) 112, 144
BsaWI WCCGGW 1 cut(s) 215
Bse1I ACTGG 1 cut(s) 67
BseBI CCWGG 2 cut(s) 30, 168
BseNI ACTGG 1 cut(s) 67
BseXI GCAGC 1 cut(s) 57
BsgI GTGCAG 1 cut(s) 64
BsiSI CCGG 1 cut(s) 216
Bsp143I GATC 1 cut(s) 212
BspACI CCGC 1 cut(s) 185
BspPI GGATC 1 cut(s) 207
BsrI ACTGG 1 cut(s) 67
BssMI GATC 1 cut(s) 212
Bst2UI CCWGG 2 cut(s) 30, 168
Bst4CI ACNGT 2 cut(s) 71, 194
BstC8I GCNNGC 2 cut(s) 125, 185
BstDEI CTNAG 1 cut(s) 56
BstKTI GATC 1 cut(s) 215
BstMBI GATC 1 cut(s) 212
BstMWI GCNNNNNNNGC 1 cut(s) 124
BstNI CCWGG 2 cut(s) 30, 168
BstSCI CCNGG 2 cut(s) 28, 166
BstV1I GCAGC 1 cut(s) 57
BstX2I RGATCY 1 cut(s) 212
BstYI RGATCY 1 cut(s) 212
Cac8I GCNNGC 2 cut(s) 125, 185
Cfr13I GGNCC 1 cut(s) 218
CpoI CGGWCCG 1 cut(s) 218
CsiI ACCWGGT 1 cut(s) 166
Csp6I GTAC 1 cut(s) 135
CspI CGGWCCG 1 cut(s) 218
CviJI RGCY 4 cut(s) 48, 127, 153, 176
CviKI_1 RGCY 4 cut(s) 48, 127, 153, 176
CviQI GTAC 1 cut(s) 135
DdeI CTNAG 1 cut(s) 56
DpnI GATC 1 cut(s) 214
DpnII GATC 1 cut(s) 212
Eco47I GGWCC 1 cut(s) 218
Eco57I CTGAAG 1 cut(s) 27
EcoRII CCWGG 2 cut(s) 28, 166
FaiI YATR 1 cut(s) 113
FauI CCCGC 1 cut(s) 192
Fnu4HI GCNGC 1 cut(s) 46
Fsp4HI GCNGC 1 cut(s) 46
GluI GCNGC 1 cut(s) 46
HapII CCGG 1 cut(s) 216
HpaII CCGG 1 cut(s) 216
HphI GGTGA 1 cut(s) 92
Hpy188I TCNGA 3 cut(s) 7, 78, 222
HpyCH4III ACNGT 2 cut(s) 71, 194
HpyCH4IV ACGT 1 cut(s) 25
HpyCH4V TGCA 3 cut(s) 45, 90, 210
HpyF10VI GCNNNNNNNGC 1 cut(s) 124
HpyF3I CTNAG 1 cut(s) 56
HpySE526I ACGT 1 cut(s) 25
Kzo9I GATC 1 cut(s) 212
LpnPI CCDG 8 cut(s) 15, 33, 42, 48, 51, 153, 180, 229
Lsp1109I GCAGC 1 cut(s) 57
MabI ACCWGGT 1 cut(s) 166
MaeII ACGT 1 cut(s) 25
MalI GATC 1 cut(s) 214
MboI GATC 1 cut(s) 212
MboII GAAGA 2 cut(s) 20, 118
MflI RGATCY 1 cut(s) 212
MluCI AATT 2 cut(s) 14, 230
MmeI TCCRAC 1 cut(s) 245
MnlI CCTC 1 cut(s) 138
MseI TTAA 1 cut(s) 161
MspI CCGG 1 cut(s) 216
MspR9I CCNGG 2 cut(s) 30, 168
MvaI CCWGG 2 cut(s) 30, 168
MwoI GCNNNNNNNGC 1 cut(s) 124
NdeII GATC 1 cut(s) 212
NmeAIII GCCGAG 1 cut(s) 144
PflFI GACNNNGTC 1 cut(s) 168
PkrI GCNGC 1 cut(s) 47
Psp6I CCWGG 2 cut(s) 28, 166
PspGI CCWGG 2 cut(s) 28, 166
PspPI GGNCC 1 cut(s) 218
PsuI RGATCY 1 cut(s) 212
PsyI GACNNNGTC 1 cut(s) 168
RsaI GTAC 1 cut(s) 136
RsaNI GTAC 1 cut(s) 135
Rsr2I CGGWCCG 1 cut(s) 218
RsrII CGGWCCG 1 cut(s) 218
SaqAI TTAA 1 cut(s) 161
SatI GCNGC 1 cut(s) 46
Sau3AI GATC 1 cut(s) 212
Sau96I GGNCC 1 cut(s) 218
ScrFI CCNGG 2 cut(s) 30, 168
SetI ASST 4 cut(s) 28, 50, 169, 248
SexAI ACCWGGT 1 cut(s) 166
SinI GGWCC 1 cut(s) 218
Sse9I AATT 2 cut(s) 14, 230
SsiI CCGC 1 cut(s) 185
StyD4I CCNGG 2 cut(s) 28, 166
TaaI ACNGT 2 cut(s) 71, 194
TaiI ACGT 1 cut(s) 28
TaqI TCGA 1 cut(s) 234
TasI AATT 2 cut(s) 14, 230
TatI WGTACW 1 cut(s) 134
Tru1I TTAA 1 cut(s) 161
Tru9I TTAA 1 cut(s) 161
TseI GCWGC 1 cut(s) 45
Tth111I GACNNNGTC 1 cut(s) 168
VpaK11BI GGWCC 1 cut(s) 218
XapI RAATTY 2 cut(s) 14, 230
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.