pycom06g14200

zinc finger CCCH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
OG0000602
Physical Location & Seq
Reverse (-)
19042511 .. 19044528
2018 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom06g14200.1

Sequence Viewer

Length: 1038 bp
ATGGCACTCTCTGAAGCAACATCTGTTGTTCCCCCAAATCCCGAAACCCCCAGCACCAACCACGCTCATTCCGACCAGGGGTCTCTGCCTTCCTCCCCGGATCCCGATCCCACACCATCTGATCTAGATCATGCGGTCCTCGATGAGCTTCAGAAACTGGATTTGAAAGAGCCGGTGGAGGAGGGGGATGGAGAACCTGATGAGTTGCAGAAGCTGGATTCGACAGAGAAGGTGGAGGAGGACGGAGTTGGTGAGTTGCAGAAGGTGGATTTGAAGGAGGAGGAGGACGGAGCTGGTGAGTTGCAGAAGGTGGATTTGAAGGAGGAGGAGGGCGGGGAGGGAGTGGAAGAAGAAGAGAAGAGTTCCGGTGAGAGAGAGGTTGAGATTTTAAACGGAGAGGAAAATGAGAGGCAGAGTGAGCAGAGTTGTCATAGCGACGGAGGAGGCGGAGGAGAAGGATGGGGAGGAAATCAGGGGTGGGAGGAGGATGGAGGTGAGGTGGAGGAGAAGAAGGCGGAGGAAACTCAGGAAAGTAACAGAAGGTATCAGTACCCGGTGAGGCCGGAAGCTGAAGACTGTTCGTATTATCTAAAGACCGGGTCTTGCAAATTTGGATCCAATTGCAAGTTTAATCACCCTGTTAGTAGGAAAACCAACCAGGTGCCTAGGGAAAGGGTCAAGGATAAGGATGAGTTGGCAGAGAATCCAAGCCAGACGGAATGCAAGTATTACTTGAGGTCAGGGGGATGCAAGTATGGGACAGATTGCAGATACAGCCACAGCAAATTGAAACCTTCTGTAGCTCCAGTTCTTGAGCTTAATTTTTTAGGCCTGCCAATTCGACCGGGTGAGAGAGAGTGCCCCTACTATATGCGAAATGGCTCCTGCAAGTATGCATCAAACTGCAGGTTTAACCACCCTGATCCTACAGCTATAGGAGGATCGATCGCCCATCTGGATTTGGCAAAGATGGTCCTGCATTGTTACAAGTTGCATCACAATCAACAGTGGCACCGTGGTCTGCACCACGGCCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-CCCH zf-CCCH_2

Protein Analysis

346

Amino Acids

38.4

Weight (kDa)

4.82

Isoelectric Point (pI)

58.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-CCCH PF00642 191 - 213 1.2e-10 Zinc finger C-x8-C-x5-C-x3-H type (and similar)
zf-CCCH PF00642 238 - 262 3.4e-07 Zinc finger C-x8-C-x5-C-x3-H type (and similar)
zf_CCCH_4 PF18345 241 - 260 4.6e-06 Zinc finger domain
zf-CCCH PF00642 282 - 307 2.6e-08 Zinc finger C-x8-C-x5-C-x3-H type (and similar)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000602)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G48195 AT3G48440 AT5G63260 AT5G63260
fragaria_vesca FvH4_5g07100 FvH4_5g07100 FvH4_5g07100 FvH4_5g07100 FvH4_5g07100 FvH4_5g07100 FvH4_5g07100
malus_domestica MD06G1158800.v1.1 MD06G1159000.v1.1 MD06G1159200.v1.1 MD14G1165100.v1.1 MD14G1165300.v1.1 MD14G1165400.v1.1 MD14G1165500.v1.1
prunus_persica Prupe.5G158300_v2.0.a1 Prupe.5G158300_v2.0.a1 Prupe.5G158400_v2.0.a1 Prupe.5G158400_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158600_v2.0.a1 Prupe.5G158700_v2.0.a1 Prupe.5G158800_v2.0.a1 Prupe.5G158900_v2.0.a1 Prupe.5G159000_v2.0.a1 Prupe.5G159100_v2.0.a1 Prupe.5G159100_v2.0.a1
pyrus_communis pycom02g00910 pycom06g14200 pycom14g13760 pycom14g13790 pycom14g13800
rosa_chinensis RchiOBHm_Chr5g0019351 RchiOBHm_Chr5g0022771 RchiOBHm_Chr7g0191441 RchiOBHm_Chr7g0191531
rosa_laevigata RLG00000004449 RLG00000032440
rosa_multiflora Rmu_sc0001809.1_g000062 Rmu_sc0005292.1_g000027
rosa_roxburghii Rroxscaffold_1G00074260 Rroxscaffold_6G00390280 Rroxscaffold_7G00168660
rosa_rugosa Rorug05G0049600 Rorug05G0049700 Rorug05G0049800 Rorug06G0510400
rosa_samantha Rh5CG151400 Rh5DG140300 Rh7AG118400 Rh7BG120400 Rh7CG123200 Rh7DG121300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 897
AccB1I GGYRCC 2 cut(s) 661, 1011
AciI CCGC 4 cut(s) 134, 333, 447, 515
AclWI GGATC 7 cut(s) 95, 101, 108, 609, 622, 917, 949
AcoI YGGCCR 1 cut(s) 1030
AcsI RAATTY 1 cut(s) 608
AcuI CTGAAG 3 cut(s) 33, 134, 591
AfaI GTAC 1 cut(s) 551
AfiI CCNNNNNNNGG 1 cut(s) 78
AgsI TTSAA 4 cut(s) 166, 274, 319, 790
AhdI GACNNNNNGTC 1 cut(s) 79
AjnI CCWGG 2 cut(s) 75, 657
AluBI AGCT 7 cut(s) 148, 214, 293, 569, 803, 817, 932
AluI AGCT 7 cut(s) 148, 214, 293, 569, 803, 817, 932
Alw26I GTCTC 1 cut(s) 87
AlwI GGATC 7 cut(s) 95, 101, 108, 609, 622, 917, 949
AlwNI CAGNNNCTG 2 cut(s) 157, 214
AoxI GGCC 3 cut(s) 560, 829, 1030
ApoI RAATTY 1 cut(s) 608
AspA2I CCTAGG 1 cut(s) 665
AspS9I GGNCC 2 cut(s) 136, 973
AsuC2I CCSGG 4 cut(s) 98, 554, 598, 846
AsuHPI GGTGA 7 cut(s) 263, 308, 380, 506, 568, 626, 860
AvaII GGWCC 2 cut(s) 136, 973
AvrII CCTAGG 1 cut(s) 665
BaeGI GKGCMC 1 cut(s) 863
BamHI GGATCC 2 cut(s) 100, 614
BanI GGYRCC 2 cut(s) 661, 1011
BbsI GAAGAC 1 cut(s) 579
BccI CCATC 6 cut(s) 124, 182, 453, 482, 960, 964
BciT130I CCWGG 2 cut(s) 77, 659
BcnI CCSGG 4 cut(s) 98, 554, 598, 846
BcoDI GTCTC 1 cut(s) 87
BfaI CTAG 2 cut(s) 125, 666
BfmI CTRYAG 4 cut(s) 798, 904, 927, 933
BfuAI ACCTGC 1 cut(s) 897
BlnI CCTAGG 1 cut(s) 665
Bme1390I CCNGG 6 cut(s) 77, 98, 554, 598, 659, 846
Bme18I GGWCC 2 cut(s) 136, 973
BmeRI GACNNNNNGTC 1 cut(s) 79
BmgT120I GGNCC 2 cut(s) 136, 973
BmiI GGNNCC 5 cut(s) 102, 616, 663, 883, 1013
BmrFI CCNGG 6 cut(s) 77, 98, 554, 598, 659, 846
BmsI GCATC 3 cut(s) 737, 905, 1003
BpiI GAAGAC 1 cut(s) 579
BpmI CTGGAG 1 cut(s) 789
BpuEI CTTGAG 2 cut(s) 754, 833
BpuMI CCSGG 4 cut(s) 98, 554, 598, 846
Bsa29I ATCGAT 1 cut(s) 944
BsaBI GATNNNNATC 2 cut(s) 105, 126
BsaI GGTCTC 1 cut(s) 87
BsaJI CCNNGG 5 cut(s) 76, 96, 665, 1015, 1027
BsaWI WCCGGW 1 cut(s) 365
BsaXI ACNNNNNCTCC 2 cut(s) 483, 513
Bsc4I CCNNNNNNNGG 1 cut(s) 78
Bse118I RCCGGY 1 cut(s) 172
Bse1I ACTGG 2 cut(s) 162, 806
Bse8I GATNNNNATC 2 cut(s) 105, 126
BseBI CCWGG 2 cut(s) 77, 659
BseCI ATCGAT 1 cut(s) 944
BseDI CCNNGG 5 cut(s) 76, 96, 665, 1015, 1027
BseGI GGATG 5 cut(s) 193, 464, 493, 694, 752
BseJI GATNNNNATC 2 cut(s) 105, 126
BseLI CCNNNNNNNGG 1 cut(s) 78
BseMII CTCAG 1 cut(s) 539
BseNI ACTGG 2 cut(s) 162, 806
BseSI GKGCMC 1 cut(s) 863
BseYI CCCAGC 1 cut(s) 50
BsgI GTGCAG 1 cut(s) 1007
Bsh1285I CGRYCG 2 cut(s) 845, 948
BshFI GGCC 3 cut(s) 562, 831, 1032
BshNI GGYRCC 2 cut(s) 661, 1011
BshVI ATCGAT 1 cut(s) 944
BsiEI CGRYCG 2 cut(s) 845, 948
BsiSI CCGG 7 cut(s) 98, 173, 366, 554, 563, 597, 845
BslFI GGGAC 1 cut(s) 772
BslI CCNNNNNNNGG 1 cut(s) 78
BsmAI GTCTC 1 cut(s) 87
BsmFI GGGAC 1 cut(s) 772
BsmI GAATGC 1 cut(s) 725
BsnI GGCC 3 cut(s) 562, 831, 1032
Bso31I GGTCTC 1 cut(s) 87
Bsp1286I GDGCHC 1 cut(s) 863
Bsp143I GATC 8 cut(s) 100, 106, 121, 127, 614, 922, 941, 945
BspACI CCGC 4 cut(s) 134, 333, 447, 515
BspANI GGCC 3 cut(s) 562, 831, 1032
BspCNI CTCAG 1 cut(s) 538
BspDI ATCGAT 1 cut(s) 944
BspLI GGNNCC 5 cut(s) 102, 616, 663, 883, 1013
BspMAI CTGCAG 1 cut(s) 908
BspMI ACCTGC 1 cut(s) 897
BspPI GGATC 7 cut(s) 95, 101, 108, 609, 622, 917, 949
BspT107I GGYRCC 2 cut(s) 661, 1011
BspTNI GGTCTC 1 cut(s) 87
BsrFI RCCGGY 1 cut(s) 172
BsrI ACTGG 2 cut(s) 162, 806
BssAI RCCGGY 1 cut(s) 172
BssECI CCNNGG 5 cut(s) 76, 96, 665, 1015, 1027
BssMI GATC 8 cut(s) 100, 106, 121, 127, 614, 922, 941, 945
BssT1I CCWWGG 1 cut(s) 665
Bst2UI CCWGG 2 cut(s) 77, 659
Bst4CI ACNGT 3 cut(s) 578, 1008, 1016
Bst6I CTCTTC 2 cut(s) 348, 353
BstC8I GCNNGC 1 cut(s) 833
BstDEI CTNAG 1 cut(s) 525
BstDSI CCRYGG 2 cut(s) 1015, 1027
BstF5I GGATG 5 cut(s) 193, 464, 493, 694, 752
BstKTI GATC 8 cut(s) 103, 109, 124, 130, 617, 925, 944, 948
BstMAI GTCTC 1 cut(s) 87
BstMBI GATC 8 cut(s) 100, 106, 121, 127, 614, 922, 941, 945
BstMCI CGRYCG 2 cut(s) 845, 948
BstMWI GCNNNNNNNGC 2 cut(s) 418, 774
BstNI CCWGG 2 cut(s) 77, 659
BstSCI CCNGG 6 cut(s) 75, 96, 552, 596, 657, 844
BstSFI CTRYAG 4 cut(s) 798, 904, 927, 933
BstSLI GKGCMC 1 cut(s) 863
BstV2I GAAGAC 1 cut(s) 579
BstX2I RGATCY 2 cut(s) 100, 614
BstYI RGATCY 2 cut(s) 100, 614
Bsu15I ATCGAT 1 cut(s) 944
BsuRI GGCC 3 cut(s) 562, 831, 1032
BsuTUI ATCGAT 1 cut(s) 944
BtgI CCRYGG 2 cut(s) 1015, 1027
BtsCI GGATG 5 cut(s) 193, 464, 493, 694, 752
BtsIMutI CAGTG 1 cut(s) 1013
BveI ACCTGC 1 cut(s) 897
Cac8I GCNNGC 1 cut(s) 833
CaiI CAGNNNCTG 2 cut(s) 157, 214
Cfr10I RCCGGY 1 cut(s) 172
Cfr13I GGNCC 2 cut(s) 136, 973
ClaI ATCGAT 1 cut(s) 944
CsiI ACCWGGT 1 cut(s) 657
Csp6I GTAC 1 cut(s) 550
CspCI CAANNNNNGTGG 1 cut(s) 1016
CviAII CATG 1 cut(s) 131
CviQI GTAC 1 cut(s) 550
DdeI CTNAG 1 cut(s) 525
DpnI GATC 8 cut(s) 102, 108, 123, 129, 616, 924, 943, 947
DpnII GATC 8 cut(s) 100, 106, 121, 127, 614, 922, 941, 945
DraI TTTAAA 1 cut(s) 390
DriI GACNNNNNGTC 1 cut(s) 79
EaeI YGGCCR 1 cut(s) 1030
Eam1104I CTCTTC 2 cut(s) 348, 353
Eam1105I GACNNNNNGTC 1 cut(s) 79
EarI CTCTTC 2 cut(s) 348, 353
EciI GGCGGA 2 cut(s) 462, 530
Eco130I CCWWGG 1 cut(s) 665
Eco147I AGGCCT 1 cut(s) 831
Eco31I GGTCTC 1 cut(s) 87
Eco47I GGWCC 2 cut(s) 136, 973
Eco57I CTGAAG 3 cut(s) 33, 134, 591
EcoRII CCWGG 2 cut(s) 75, 657
EcoT14I CCWWGG 1 cut(s) 665
EcoT22I ATGCAT 1 cut(s) 898
ErhI CCWWGG 1 cut(s) 665
FaeI CATG 1 cut(s) 134
FaiI YATR 7 cut(s) 132, 432, 756, 870, 872, 894, 935
FalI AAGNNNNNCTT 2 cut(s) 716, 748
FaqI GGGAC 1 cut(s) 772
FatI CATG 1 cut(s) 130
FauI CCCGC 1 cut(s) 326
FokI GGATG 5 cut(s) 200, 471, 500, 701, 759
FspBI CTAG 2 cut(s) 125, 666
GsaI CCCAGC 1 cut(s) 54
GsuI CTGGAG 1 cut(s) 789
HaeIII GGCC 3 cut(s) 562, 831, 1032
HapII CCGG 7 cut(s) 98, 173, 366, 554, 563, 597, 845
Hin1II CATG 1 cut(s) 134
HinfI GANTC 2 cut(s) 218, 703
HpaII CCGG 7 cut(s) 98, 173, 366, 554, 563, 597, 845
HphI GGTGA 7 cut(s) 263, 308, 380, 506, 568, 626, 860
Hpy188I TCNGA 4 cut(s) 13, 73, 121, 153
Hpy188III TCNNGA 6 cut(s) 41, 104, 125, 527, 812, 956
Hpy99I CGWCG 1 cut(s) 440
HpyCH4III ACNGT 3 cut(s) 578, 1008, 1016
HpyF10VI GCNNNNNNNGC 2 cut(s) 418, 774
HpyF3I CTNAG 1 cut(s) 525
Hsp92II CATG 1 cut(s) 134
Kzo9I GATC 8 cut(s) 100, 106, 121, 127, 614, 922, 941, 945
LmnI GCTCC 3 cut(s) 290, 808, 887
LweI GCATC 3 cut(s) 737, 905, 1003
MabI ACCWGGT 1 cut(s) 657
MaeI CTAG 2 cut(s) 125, 666
MaeIII GTNAC 2 cut(s) 533, 983
MalI GATC 8 cut(s) 102, 108, 123, 129, 616, 924, 943, 947
MboI GATC 8 cut(s) 100, 106, 121, 127, 614, 922, 941, 945
MboII GAAGA 6 cut(s) 359, 362, 365, 370, 520, 584
MfeI CAATTG 1 cut(s) 619
MflI RGATCY 2 cut(s) 100, 614
MhlI GDGCHC 1 cut(s) 863
MluCI AATT 5 cut(s) 608, 619, 785, 820, 837
MmeI TCCRAC 1 cut(s) 96
Mph1103I ATGCAT 1 cut(s) 898
MseI TTAA 4 cut(s) 389, 630, 819, 912
MspI CCGG 7 cut(s) 98, 173, 366, 554, 563, 597, 845
MspR9I CCNGG 6 cut(s) 77, 98, 554, 598, 659, 846
MunI CAATTG 1 cut(s) 619
Mva1269I GAATGC 1 cut(s) 725
MvaI CCWGG 2 cut(s) 77, 659
MwoI GCNNNNNNNGC 2 cut(s) 418, 774
NciI CCSGG 4 cut(s) 98, 554, 598, 846
NdeII GATC 8 cut(s) 100, 106, 121, 127, 614, 922, 941, 945
NlaIII CATG 1 cut(s) 134
NlaIV GGNNCC 5 cut(s) 102, 616, 663, 883, 1013
NsiI ATGCAT 1 cut(s) 898
PceI AGGCCT 1 cut(s) 831
PcsI WCGNNNNNNNCGW 1 cut(s) 69
PctI GAATGC 1 cut(s) 725
PfeI GAWTC 2 cut(s) 218, 703
PflFI GACNNNGTC 1 cut(s) 598
Ple19I CGATCG 1 cut(s) 948
Psp6I CCWGG 2 cut(s) 75, 657
PspFI CCCAGC 1 cut(s) 50
PspGI CCWGG 2 cut(s) 75, 657
PspN4I GGNNCC 5 cut(s) 102, 616, 663, 883, 1013
PspPI GGNCC 2 cut(s) 136, 973
PsrI GAACNNNNNNTAC 2 cut(s) 792, 824
PstI CTGCAG 1 cut(s) 908
PstNI CAGNNNCTG 2 cut(s) 157, 214
PsuI RGATCY 2 cut(s) 100, 614
PsyI GACNNNGTC 1 cut(s) 598
PvuI CGATCG 1 cut(s) 948
RsaI GTAC 1 cut(s) 551
RsaNI GTAC 1 cut(s) 550
SaqAI TTAA 4 cut(s) 389, 630, 819, 912
Sau3AI GATC 8 cut(s) 100, 106, 121, 127, 614, 922, 941, 945
Sau96I GGNCC 2 cut(s) 136, 973
ScrFI CCNGG 6 cut(s) 77, 98, 554, 598, 659, 846
SduI GDGCHC 1 cut(s) 863
SexAI ACCWGGT 1 cut(s) 657
SfaNI GCATC 3 cut(s) 737, 905, 1003
SfcI CTRYAG 4 cut(s) 798, 904, 927, 933
SinI GGWCC 2 cut(s) 136, 973
SmlI CTYRAG 2 cut(s) 733, 812
SmoI CTYRAG 2 cut(s) 733, 812
Sse9I AATT 5 cut(s) 608, 619, 785, 820, 837
SseBI AGGCCT 1 cut(s) 831
SsiI CCGC 4 cut(s) 134, 333, 447, 515
SspMI CTAG 2 cut(s) 125, 666
StuI AGGCCT 1 cut(s) 831
StyD4I CCNGG 6 cut(s) 75, 96, 552, 596, 657, 844
StyI CCWWGG 1 cut(s) 665
TaaI ACNGT 3 cut(s) 578, 1008, 1016
TaqI TCGA 4 cut(s) 141, 221, 841, 944
TasI AATT 5 cut(s) 608, 619, 785, 820, 837
TfiI GAWTC 2 cut(s) 218, 703
Tru1I TTAA 4 cut(s) 389, 630, 819, 912
Tru9I TTAA 4 cut(s) 389, 630, 819, 912
TscAI CASTG 1 cut(s) 1013
TspGWI ACGGA 5 cut(s) 258, 303, 408, 453, 731
TspRI CASTG 1 cut(s) 1013
Tth111I GACNNNGTC 1 cut(s) 598
VpaK11BI GGWCC 2 cut(s) 136, 973
XapI RAATTY 1 cut(s) 608
XbaI TCTAGA 1 cut(s) 124
XmaJI CCTAGG 1 cut(s) 665
XspI CTAG 2 cut(s) 125, 666
Zsp2I ATGCAT 1 cut(s) 898
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.