Prupe.5G158400_v2.0.a1

zinc finger CCCH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0000602
Physical Location & Seq
Reverse (-)
14044480 .. 14050634
6155 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G158400.2

Sequence Viewer

Length: 1644 bp
ATGTTGCCAGCTGCAGCTGTACGTGTCCTGCTCCCAGTGTCAGCGTCTGTGATTTACGTAATTTATAGGTATTTGAGATCAGGACGGCAAATAGAGAGCTCTCCAAATACCAGTAACAACGACGTCGTTCCACCCCAAAATTCCGGTAACAGCGACGTCGTTCCCTATCCTGAACTCTCTGATCGCGATCGTACCATCCTTGCAGAGATTCTGAAAGATAACCATGTCCTCCTCGATAAGATTCGGGCACTCGAGCCCGCCTTCCTTGATGGGCTTCGGAAATTCAAGCCCGCCGTCCTCCGTGAGATGGTGTTCGACCCTGCTGAATTGGATCCTGTCATCGTTGATGCGAGTCGTAAATTGTCTTTGAAAGGAGGAAAGGAGGAAGGCGAAGAAAACGAAAATGGAAACTTAAACGAGACGAAGAGCGAAGAGAGGGATGAGGAAAGAAGCAGAAGCCGTCATTACCCAGTGAGGCCTGGAGCTCGAGACTGTCGGTGTTATCTCAAGACTGGGACTTGTAAGTTTGGGCCCAATTGCAAGTTTAATCACCCTCGCATAACAACGAAAAACAATCAGAATTCCTTCAGGTCAGGAGGACGACATCCAAATCTCTACACTACCCCAAATCCCGGTAACGACGACGTCCTTCCCCCAAATTCCGACATTCCCTCAATTCTTGGCAACGACGACGTCTTTCCCCAAAATCCCGGTGACCCTGACCGTGAAAATGGAAATAGAAACGAGACACAGAGCGAAGAGAGGGATAAGGAAAGAAGCAGAATTCATCATTACCCGGTGAGGTTTGAAGATGGAGACTGTTGGTCTTATCTAAAGACTGGGACATGTAATTTTGGGCCCAGTTGCAAGTTTAATCACCCTCATAGAAGGAAAAACAGGAAAAACAATCAGAATTACTTCAGATCAGGAGGATGTAAACCCGGAAATGCTTTTTCTTTCAACCCCAGAAGAGGGGAACCTTCTGTGGCTCCTGTTCAAAAACTTAACTTTATGGACCTGCCAATTCGTCCGGGGGAGAAAGAATGTCCTTACTATGTGAAAAATGGCTCCTGCAAGTCTGGAACTAACTGCACGTTTAATCACCCTGATCCTACCGCTATAGGAGAATCTGGCCCCCCATCCGGATACATTGATGGTGGACCTGCATCAGTACAAGGTGCATCGTCAGCAACAGCGTGGGATTCCCTTTGTGTGCCAATGATTCCGCCATCTCAAGGGATTCCTTCCCAAAATACAGAATGGAATGGTTCTCAGGATCCAGAATATCTACCAGAGAGAAGCATACCTGCACCTCCACCATATGTTATGAACAAGGCCGTGACTGAAACCAACATCTATGAACAAAATCCACAGCAGAAGCAAGTTGAAGAATTCCCAGAACGACCTGGGCAACCTATTTGCATTTACTTCTTAAGAAAAGGGGATTGCAAGCATAGATCTAATTGCAAATATCACCATCCAAAAAATCAGACTGCAGTGTCCCCCTTATGTGCACTGAGTGACAAGGGCCTCCCTTTGAGACCAGGCGAGAACATTTGCACACAATACAGTAGCTATGGCATTTGCAATTCTGGGCCAGCTTGTAAATTTGACCATCCGTCATTATCAACTTTCCTTCTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-CCCH zf-CCCH_2

Protein Analysis

548

Amino Acids

61.03

Weight (kDa)

8.0

Isoelectric Point (pI)

54.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000602)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G48195 AT3G48440 AT5G63260 AT5G63260
fragaria_vesca FvH4_5g07100 FvH4_5g07100 FvH4_5g07100 FvH4_5g07100 FvH4_5g07100 FvH4_5g07100 FvH4_5g07100
malus_domestica MD06G1158800.v1.1 MD06G1159000.v1.1 MD06G1159200.v1.1 MD14G1165100.v1.1 MD14G1165300.v1.1 MD14G1165400.v1.1 MD14G1165500.v1.1
prunus_persica Prupe.5G158300_v2.0.a1 Prupe.5G158300_v2.0.a1 Prupe.5G158400_v2.0.a1 Prupe.5G158400_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158600_v2.0.a1 Prupe.5G158700_v2.0.a1 Prupe.5G158800_v2.0.a1 Prupe.5G158900_v2.0.a1 Prupe.5G159000_v2.0.a1 Prupe.5G159100_v2.0.a1 Prupe.5G159100_v2.0.a1
pyrus_communis pycom02g00910 pycom06g14200 pycom14g13760 pycom14g13790 pycom14g13800
rosa_chinensis RchiOBHm_Chr5g0019351 RchiOBHm_Chr5g0022771 RchiOBHm_Chr7g0191441 RchiOBHm_Chr7g0191531
rosa_laevigata RLG00000004449 RLG00000032440
rosa_multiflora Rmu_sc0001809.1_g000062 Rmu_sc0005292.1_g000027
rosa_roxburghii Rroxscaffold_1G00074260 Rroxscaffold_6G00390280 Rroxscaffold_7G00168660
rosa_rugosa Rorug05G0049600 Rorug05G0049700 Rorug05G0049800 Rorug06G0510400
rosa_samantha Rh5CG151400 Rh5DG140300 Rh7AG118400 Rh7BG120400 Rh7CG123200 Rh7DG121300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1498
AatII GACGTC 4 cut(s) 126, 159, 648, 696
Acc36I ACCTGC 3 cut(s) 1026, 1171, 1315
AccII CGCG 1 cut(s) 186
AccIII TCCGGA 1 cut(s) 1142
AciI CCGC 4 cut(s) 258, 291, 1116, 1226
AclWI GGATC 5 cut(s) 326, 339, 1103, 1271, 1284
AcsI RAATTY 7 cut(s) 139, 281, 580, 658, 783, 1391, 1607
AcuI CTGAAG 2 cut(s) 571, 904
AcyI GRCGYC 4 cut(s) 123, 156, 645, 693
AdeI CACNNNGTG 1 cut(s) 1520
AfaI GTAC 3 cut(s) 21, 193, 1173
AfiI CCNNNNNNNGG 6 cut(s) 307, 632, 971, 972, 1142, 1235
AflII CTTAAG 1 cut(s) 1432
AflIII ACRYGT 2 cut(s) 22, 845
AgsI TTSAA 6 cut(s) 286, 370, 809, 961, 998, 1388
AhdI GACNNNNNGTC 2 cut(s) 823, 1618
AjnI CCWGG 3 cut(s) 478, 1405, 1543
AluBI AGCT 6 cut(s) 11, 17, 99, 485, 1575, 1601
AluI AGCT 6 cut(s) 11, 17, 99, 485, 1575, 1601
Alw21I GWGCWC 3 cut(s) 101, 487, 1516
Alw26I GTCTC 5 cut(s) 413, 483, 740, 810, 1534
Alw44I GTGCAC 1 cut(s) 1512
AlwI GGATC 5 cut(s) 326, 339, 1103, 1271, 1284
AlwNI CAGNNNCTG 1 cut(s) 47
Ama87I CYCGRG 2 cut(s) 251, 486
Aor13HI TCCGGA 1 cut(s) 1142
AoxI GGCC 7 cut(s) 476, 530, 857, 1132, 1335, 1528, 1595
ApaI GGGCCC 2 cut(s) 534, 861
ApaLI GTGCAC 1 cut(s) 1512
ApeKI GCWGC 2 cut(s) 11, 14
ApoI RAATTY 7 cut(s) 139, 281, 580, 658, 783, 1391, 1607
Asp700I GAANNNNTTC 2 cut(s) 584, 917
AspS9I GGNCC 9 cut(s) 530, 531, 857, 858, 1015, 1133, 1160, 1528, 1595
AsuC2I CCSGG 5 cut(s) 633, 711, 797, 942, 1032
AsuHPI GGTGA 6 cut(s) 542, 725, 811, 869, 1094, 1466
AvaI CYCGRG 2 cut(s) 251, 486
AvaII GGWCC 2 cut(s) 1015, 1160
BaeGI GKGCMC 4 cut(s) 250, 534, 861, 1516
BamHI GGATCC 2 cut(s) 331, 1276
BanII GRGCYC 5 cut(s) 101, 258, 487, 534, 861
Bbv12I GWGCWC 3 cut(s) 101, 487, 1516
BbvI GCAGC 1 cut(s) 26
BccI CCATC 9 cut(s) 203, 263, 301, 806, 1147, 1148, 1237, 1485, 1623
BceAI ACGGC 4 cut(s) 101, 278, 444, 1322
BciT130I CCWGG 3 cut(s) 480, 1407, 1545
BciVI GTATCC 1 cut(s) 1139
BcnI CCSGG 5 cut(s) 633, 711, 797, 942, 1032
BcoDI GTCTC 5 cut(s) 413, 483, 740, 810, 1534
BfmI CTRYAG 3 cut(s) 12, 1119, 1494
BfrI CTTAAG 1 cut(s) 1432
BfuAI ACCTGC 3 cut(s) 1026, 1171, 1315
BfuI GTATCC 1 cut(s) 1139
BglII AGATCT 1 cut(s) 1457
BisI GCNGC 2 cut(s) 12, 15
BlsI GCNGC 2 cut(s) 13, 16
Bme1390I CCNGG 8 cut(s) 480, 633, 711, 797, 942, 1032, 1407, 1545
Bme18I GGWCC 2 cut(s) 1015, 1160
BmeRI GACNNNNNGTC 2 cut(s) 823, 1618
BmeT110I CYCGRG 2 cut(s) 251, 486
BmgT120I GGNCC 9 cut(s) 530, 531, 857, 858, 1015, 1133, 1160, 1528, 1595
BmiI GGNNCC 8 cut(s) 333, 532, 859, 978, 990, 1069, 1135, 1278
BmrFI CCNGG 8 cut(s) 480, 633, 711, 797, 942, 1032, 1407, 1545
BmrI ACTGGG 5 cut(s) 29, 464, 522, 849, 855
BmsI GCATC 3 cut(s) 337, 1175, 1190
BmuI ACTGGG 5 cut(s) 29, 464, 522, 849, 855
BpmI CTGGAG 1 cut(s) 501
BpuEI CTTGAG 2 cut(s) 491, 1218
BpuMI CCSGG 5 cut(s) 633, 711, 797, 942, 1032
BsaAI YACGTR 2 cut(s) 23, 58
BsaBI GATNNNNATC 1 cut(s) 186
BsaHI GRCGYC 4 cut(s) 123, 156, 645, 693
BsaI GGTCTC 1 cut(s) 1534
BsaJI CCNNGG 2 cut(s) 1031, 1406
BsaWI WCCGGW 2 cut(s) 143, 1142
Bsc4I CCNNNNNNNGG 6 cut(s) 307, 632, 971, 972, 1142, 1235
Bse1I ACTGG 6 cut(s) 35, 111, 470, 517, 844, 861
Bse8I GATNNNNATC 1 cut(s) 186
BseAI TCCGGA 1 cut(s) 1142
BseBI CCWGG 3 cut(s) 480, 1407, 1545
BseDI CCNNGG 2 cut(s) 1031, 1406
BseGI GGATG 7 cut(s) 195, 445, 604, 938, 1139, 1477, 1615
BseJI GATNNNNATC 1 cut(s) 186
BseLI CCNNNNNNNGG 6 cut(s) 307, 632, 971, 972, 1142, 1235
BseMII CTCAG 2 cut(s) 1286, 1508
BseNI ACTGG 6 cut(s) 35, 111, 470, 517, 844, 861
BseRI GAGGAG 1 cut(s) 221
BseSI GKGCMC 4 cut(s) 250, 534, 861, 1516
BseXI GCAGC 1 cut(s) 26
BsgI GTGCAG 2 cut(s) 1075, 1293
Bsh1236I CGCG 1 cut(s) 186
Bsh1285I CGRYCG 1 cut(s) 190
BshFI GGCC 7 cut(s) 478, 532, 859, 1134, 1337, 1530, 1597
BsiEI CGRYCG 1 cut(s) 190
BsiHKAI GWGCWC 3 cut(s) 101, 487, 1516
BsiHKCI CYCGRG 2 cut(s) 251, 486
BsiSI CCGG 7 cut(s) 144, 633, 711, 797, 942, 1031, 1143
BslFI GGGAC 3 cut(s) 529, 856, 1486
BslI CCNNNNNNNGG 6 cut(s) 307, 632, 971, 972, 1142, 1235
BsmAI GTCTC 5 cut(s) 413, 483, 740, 810, 1534
BsmBI CGTCTC 1 cut(s) 413
BsmFI GGGAC 3 cut(s) 529, 856, 1486
BsnI GGCC 7 cut(s) 478, 532, 859, 1134, 1337, 1530, 1597
Bso31I GGTCTC 1 cut(s) 1534
BsoBI CYCGRG 2 cut(s) 251, 486
Bsp120I GGGCCC 2 cut(s) 530, 857
Bsp1286I GDGCHC 7 cut(s) 101, 250, 258, 487, 534, 861, 1516
Bsp13I TCCGGA 1 cut(s) 1142
Bsp143I GATC 8 cut(s) 77, 181, 187, 331, 923, 1108, 1276, 1457
Bsp68I TCGCGA 1 cut(s) 186
BspACI CCGC 4 cut(s) 258, 291, 1116, 1226
BspANI GGCC 7 cut(s) 478, 532, 859, 1134, 1337, 1530, 1597
BspCNI CTCAG 2 cut(s) 1285, 1509
BspEI TCCGGA 1 cut(s) 1142
BspFNI CGCG 1 cut(s) 186
BspLI GGNNCC 8 cut(s) 333, 532, 859, 978, 990, 1069, 1135, 1278
BspMAI CTGCAG 2 cut(s) 16, 1498
BspMI ACCTGC 3 cut(s) 1026, 1171, 1315
BspPI GGATC 5 cut(s) 326, 339, 1103, 1271, 1284
BspQI GCTCTTC 1 cut(s) 419
BspTI CTTAAG 1 cut(s) 1432
BspTNI GGTCTC 1 cut(s) 1534
BsrI ACTGG 6 cut(s) 35, 111, 470, 517, 844, 861
BssECI CCNNGG 2 cut(s) 1031, 1406
BssMI GATC 8 cut(s) 77, 181, 187, 331, 923, 1108, 1276, 1457
BssNI GRCGYC 4 cut(s) 123, 156, 645, 693
Bst2UI CCWGG 3 cut(s) 480, 1407, 1545
Bst4CI ACNGT 4 cut(s) 494, 725, 821, 1571
Bst6I CTCTTC 4 cut(s) 419, 426, 753, 964
BstACI GRCGYC 4 cut(s) 123, 156, 645, 693
BstAFI CTTAAG 1 cut(s) 1432
BstBAI YACGTR 2 cut(s) 23, 58
BstC8I GCNNGC 5 cut(s) 9, 258, 291, 1451, 1599
BstDEI CTNAG 2 cut(s) 1272, 1517
BstEII GGTNACC 1 cut(s) 713
BstF5I GGATG 7 cut(s) 195, 445, 604, 938, 1139, 1477, 1615
BstFNI CGCG 1 cut(s) 186
BstKTI GATC 8 cut(s) 80, 184, 190, 334, 926, 1111, 1279, 1460
BstMAI GTCTC 5 cut(s) 413, 483, 740, 810, 1534
BstMBI GATC 8 cut(s) 77, 181, 187, 331, 923, 1108, 1276, 1457
BstMCI CGRYCG 1 cut(s) 190
BstMWI GCNNNNNNNGC 1 cut(s) 1187
BstNI CCWGG 3 cut(s) 480, 1407, 1545
BstNSI RCATGY 1 cut(s) 849
BstPI GGTNACC 1 cut(s) 713
BstSCI CCNGG 8 cut(s) 478, 631, 709, 795, 940, 1030, 1405, 1543
BstSFI CTRYAG 3 cut(s) 12, 1119, 1494
BstSLI GKGCMC 4 cut(s) 250, 534, 861, 1516
BstSNI TACGTA 1 cut(s) 58
BstUI CGCG 1 cut(s) 186
BstV1I GCAGC 1 cut(s) 26
BstX2I RGATCY 3 cut(s) 331, 1276, 1457
BstYI RGATCY 3 cut(s) 331, 1276, 1457
BsuI GTATCC 1 cut(s) 1139
BsuRI GGCC 7 cut(s) 478, 532, 859, 1134, 1337, 1530, 1597
BtsCI GGATG 7 cut(s) 195, 445, 604, 938, 1139, 1477, 1615
BtsI GCAGTG 1 cut(s) 1503
BtsIMutI CAGTG 4 cut(s) 42, 477, 1503, 1514
BtuMI TCGCGA 1 cut(s) 186
BveI ACCTGC 3 cut(s) 1026, 1171, 1315
Cac8I GCNNGC 5 cut(s) 9, 258, 291, 1451, 1599
CaiI CAGNNNCTG 1 cut(s) 47
Cfr13I GGNCC 9 cut(s) 530, 531, 857, 858, 1015, 1133, 1160, 1528, 1595
CseI GACGC 1 cut(s) 33
Csp6I GTAC 3 cut(s) 20, 192, 1172
CviAII CATG 2 cut(s) 224, 846
CviQI GTAC 3 cut(s) 20, 192, 1172
DdeI CTNAG 2 cut(s) 1272, 1517
DpnI GATC 8 cut(s) 79, 183, 189, 333, 925, 1110, 1278, 1459
DpnII GATC 8 cut(s) 77, 181, 187, 331, 923, 1108, 1276, 1457
DraIII CACNNNGTG 1 cut(s) 1520
DrdI GACNNNNNNGTC 1 cut(s) 1498
DriI GACNNNNNGTC 2 cut(s) 823, 1618
DseDI GACNNNNNNGTC 1 cut(s) 1498
Eam1104I CTCTTC 4 cut(s) 419, 426, 753, 964
Eam1105I GACNNNNNGTC 2 cut(s) 823, 1618
EarI CTCTTC 4 cut(s) 419, 426, 753, 964
EciI GGCGGA 1 cut(s) 1215
Ecl136II GAGCTC 2 cut(s) 99, 485
Eco105I TACGTA 1 cut(s) 58
Eco147I AGGCCT 1 cut(s) 478
Eco24I GRGCYC 5 cut(s) 101, 258, 487, 534, 861
Eco31I GGTCTC 1 cut(s) 1534
Eco47I GGWCC 2 cut(s) 1015, 1160
Eco53kI GAGCTC 2 cut(s) 99, 485
Eco57I CTGAAG 2 cut(s) 571, 904
Eco88I CYCGRG 2 cut(s) 251, 486
Eco91I GGTNACC 1 cut(s) 713
EcoICRI GAGCTC 2 cut(s) 99, 485
EcoO109I RGGNCCY 1 cut(s) 1528
EcoO65I GGTNACC 1 cut(s) 713
EcoRI GAATTC 3 cut(s) 580, 783, 1391
EcoRII CCWGG 3 cut(s) 478, 1405, 1543
EcoT38I GRGCYC 5 cut(s) 101, 258, 487, 534, 861
Esp3I CGTCTC 1 cut(s) 413
FaeI CATG 2 cut(s) 227, 849
FaqI GGGAC 3 cut(s) 529, 856, 1486
FatI CATG 2 cut(s) 223, 845
FauI CCCGC 2 cut(s) 265, 298
FauNDI CATATG 1 cut(s) 1321
Fnu4HI GCNGC 2 cut(s) 12, 15
FokI GGATG 7 cut(s) 182, 452, 591, 945, 1126, 1464, 1602
FriOI GRGCYC 5 cut(s) 101, 258, 487, 534, 861
Fsp4HI GCNGC 2 cut(s) 12, 15
GluI GCNGC 2 cut(s) 12, 15
GsuI CTGGAG 1 cut(s) 501
HaeIII GGCC 7 cut(s) 478, 532, 859, 1134, 1337, 1530, 1597
HapII CCGG 7 cut(s) 144, 633, 711, 797, 942, 1031, 1143
HgaI GACGC 1 cut(s) 33
Hin1I GRCGYC 4 cut(s) 123, 156, 645, 693
Hin1II CATG 2 cut(s) 227, 849
HinfI GANTC 7 cut(s) 208, 241, 352, 1127, 1202, 1222, 1240
HpaII CCGG 7 cut(s) 144, 633, 711, 797, 942, 1031, 1143
HphI GGTGA 6 cut(s) 542, 725, 811, 869, 1094, 1466
Hpy166II GTNNAC 3 cut(s) 938, 1160, 1514
Hpy188I TCNGA 8 cut(s) 181, 213, 279, 579, 664, 912, 923, 1491
Hpy8I GTNNAC 3 cut(s) 938, 1160, 1514
Hpy99I CGWCG 8 cut(s) 125, 128, 158, 161, 644, 647, 692, 695
HpyAV CCTTC 7 cut(s) 271, 380, 595, 659, 882, 990, 1254
HpyCH4III ACNGT 4 cut(s) 494, 725, 821, 1571
HpyCH4IV ACGT 7 cut(s) 22, 57, 123, 156, 645, 693, 1094
HpyF10VI GCNNNNNNNGC 1 cut(s) 1187
HpyF3I CTNAG 2 cut(s) 1272, 1517
HpySE526I ACGT 7 cut(s) 22, 57, 123, 156, 645, 693, 1094
Hsp92I GRCGYC 4 cut(s) 123, 156, 645, 693
Hsp92II CATG 2 cut(s) 227, 849
Kpn2I TCCGGA 1 cut(s) 1142
Kzo9I GATC 8 cut(s) 77, 181, 187, 331, 923, 1108, 1276, 1457
LguI GCTCTTC 1 cut(s) 419
LmnI GCTCC 4 cut(s) 36, 482, 994, 1073
Lsp1109I GCAGC 1 cut(s) 26
LweI GCATC 3 cut(s) 337, 1175, 1190
MaeII ACGT 7 cut(s) 22, 57, 123, 156, 645, 693, 1094
MaeIII GTNAC 6 cut(s) 113, 146, 635, 713, 1339, 1520
MalI GATC 8 cut(s) 79, 183, 189, 333, 925, 1110, 1278, 1459
MboI GATC 8 cut(s) 77, 181, 187, 331, 923, 1108, 1276, 1457
MboII GAAGA 7 cut(s) 404, 436, 443, 770, 821, 981, 1400
MfeI CAATTG 1 cut(s) 535
MflI RGATCY 3 cut(s) 331, 1276, 1457
MhlI GDGCHC 7 cut(s) 101, 250, 258, 487, 534, 861, 1516
MlyI GAGTC 1 cut(s) 361
MmeI TCCRAC 1 cut(s) 687
MroI TCCGGA 1 cut(s) 1142
MroXI GAANNNNTTC 2 cut(s) 584, 917
MseI TTAA 6 cut(s) 413, 546, 873, 1005, 1098, 1433
MspA1I CMGCKG 2 cut(s) 11, 17
MspCI CTTAAG 1 cut(s) 1432
MspI CCGG 7 cut(s) 144, 633, 711, 797, 942, 1031, 1143
MspR9I CCNGG 8 cut(s) 480, 633, 711, 797, 942, 1032, 1407, 1545
MunI CAATTG 1 cut(s) 535
MvaI CCWGG 3 cut(s) 480, 1407, 1545
MvnI CGCG 1 cut(s) 186
MwoI GCNNNNNNNGC 1 cut(s) 1187
NciI CCSGG 5 cut(s) 633, 711, 797, 942, 1032
NdeI CATATG 1 cut(s) 1321
NdeII GATC 8 cut(s) 77, 181, 187, 331, 923, 1108, 1276, 1457
NlaIII CATG 2 cut(s) 227, 849
NlaIV GGNNCC 8 cut(s) 333, 532, 859, 978, 990, 1069, 1135, 1278
NmuCI GTSAC 3 cut(s) 713, 1339, 1520
NruI TCGCGA 1 cut(s) 186
NspI RCATGY 1 cut(s) 849
PaeR7I CTCGAG 2 cut(s) 251, 486
PceI AGGCCT 1 cut(s) 478
PciI ACATGT 1 cut(s) 845
PciSI GCTCTTC 1 cut(s) 419
PdmI GAANNNNTTC 2 cut(s) 584, 917
PfeI GAWTC 6 cut(s) 208, 241, 1127, 1202, 1222, 1240
PflFI GACNNNGTC 2 cut(s) 644, 692
PkrI GCNGC 2 cut(s) 13, 16
Ple19I CGATCG 1 cut(s) 190
PleI GAGTC 1 cut(s) 360
PpsI GAGTC 1 cut(s) 360
Ppu21I YACGTR 2 cut(s) 23, 58
PscI ACATGT 1 cut(s) 845
Psp124BI GAGCTC 2 cut(s) 101, 487
Psp6I CCWGG 3 cut(s) 478, 1405, 1543
PspEI GGTNACC 1 cut(s) 713
PspGI CCWGG 3 cut(s) 478, 1405, 1543
PspN4I GGNNCC 8 cut(s) 333, 532, 859, 978, 990, 1069, 1135, 1278
PspOMI GGGCCC 2 cut(s) 530, 857
PspPI GGNCC 9 cut(s) 530, 531, 857, 858, 1015, 1133, 1160, 1528, 1595
PspXI VCTCGAGB 1 cut(s) 251
PstI CTGCAG 2 cut(s) 16, 1498
PstNI CAGNNNCTG 1 cut(s) 47
PsuI RGATCY 3 cut(s) 331, 1276, 1457
PsyI GACNNNGTC 2 cut(s) 644, 692
PvuI CGATCG 1 cut(s) 190
PvuII CAGCTG 2 cut(s) 11, 17
RruI TCGCGA 1 cut(s) 186
RsaI GTAC 3 cut(s) 21, 193, 1173
RsaNI GTAC 3 cut(s) 20, 192, 1172
SacI GAGCTC 2 cut(s) 101, 487
SapI GCTCTTC 1 cut(s) 419
SaqAI TTAA 6 cut(s) 413, 546, 873, 1005, 1098, 1433
SatI GCNGC 2 cut(s) 12, 15
Sau3AI GATC 8 cut(s) 77, 181, 187, 331, 923, 1108, 1276, 1457
Sau96I GGNCC 9 cut(s) 530, 531, 857, 858, 1015, 1133, 1160, 1528, 1595
SchI GAGTC 1 cut(s) 361
ScrFI CCNGG 8 cut(s) 480, 633, 711, 797, 942, 1032, 1407, 1545
SduI GDGCHC 7 cut(s) 101, 250, 258, 487, 534, 861, 1516
SfaNI GCATC 3 cut(s) 337, 1175, 1190
SfcI CTRYAG 3 cut(s) 12, 1119, 1494
Sfr274I CTCGAG 2 cut(s) 251, 486
SinI GGWCC 2 cut(s) 1015, 1160
SlaI CTCGAG 2 cut(s) 251, 486
SmlI CTYRAG 5 cut(s) 251, 486, 506, 1233, 1432
SmoI CTYRAG 5 cut(s) 251, 486, 506, 1233, 1432
SnaBI TACGTA 1 cut(s) 58
SseBI AGGCCT 1 cut(s) 478
SsiI CCGC 4 cut(s) 258, 291, 1116, 1226
SstI GAGCTC 2 cut(s) 101, 487
StuI AGGCCT 1 cut(s) 478
StyD4I CCNGG 8 cut(s) 478, 631, 709, 795, 940, 1030, 1405, 1543
TaaI ACNGT 4 cut(s) 494, 725, 821, 1571
TaiI ACGT 7 cut(s) 25, 60, 126, 159, 648, 696, 1097
TaqI TCGA 4 cut(s) 234, 252, 315, 487
TatI WGTACW 1 cut(s) 1171
TfiI GAWTC 6 cut(s) 208, 241, 1127, 1202, 1222, 1240
Tru1I TTAA 6 cut(s) 413, 546, 873, 1005, 1098, 1433
Tru9I TTAA 6 cut(s) 413, 546, 873, 1005, 1098, 1433
TscAI CASTG 4 cut(s) 42, 477, 1503, 1521
TseFI GTSAC 3 cut(s) 713, 1339, 1520
TseI GCWGC 2 cut(s) 11, 14
Tsp45I GTSAC 3 cut(s) 713, 1339, 1520
TspDTI ATGAA 3 cut(s) 776, 1343, 1374
TspGWI ACGGA 2 cut(s) 290, 1608
TspRI CASTG 4 cut(s) 42, 477, 1503, 1521
Tth111I GACNNNGTC 2 cut(s) 644, 692
Vha464I CTTAAG 1 cut(s) 1432
VneI GTGCAC 1 cut(s) 1512
VpaK11BI GGWCC 2 cut(s) 1015, 1160
XapI RAATTY 7 cut(s) 139, 281, 580, 658, 783, 1391, 1607
XceI RCATGY 1 cut(s) 849
XhoI CTCGAG 2 cut(s) 251, 486
XmnI GAANNNNTTC 2 cut(s) 584, 917
ZraI GACGTC 4 cut(s) 124, 157, 646, 694
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.