RchiOBHm_Chr7g0191531

zinc finger CCCH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000602
Physical Location & Seq
Forward (+)
10273275 .. 10274632
1358 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ17116

Sequence Viewer

Length: 309 bp
ATGGTTTTAATGAGTCTCATCCATTTGATGATAATAACTCAGACTGCGGTATCCCTCTCATTTACCCTCAGTGACAAGGGCCTGCCTTTGAGACCAGATCAGAATATTTGCACCCATTACAGTCGCTACGGCATACGCAAATTTGGGCCAGCTTGTAAATTTGATCATCCTTCACATTTAACATCTTCAACTACATCTGATCTTGATCATCAACTTCCTTTCAGTGACTTGGCGAATACAAAAGAGGCGGGAATAGCTAGGTGCAGAAGTGGAACTGATGATATAATTCAGCTGCAACAAGCCGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-CCCH zf-CCCH_2

Protein Analysis

102

Amino Acids

11.29

Weight (kDa)

6.95

Isoelectric Point (pI)

50.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000602)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G48195 AT3G48440 AT5G63260 AT5G63260
fragaria_vesca FvH4_5g07100 FvH4_5g07100 FvH4_5g07100 FvH4_5g07100 FvH4_5g07100 FvH4_5g07100 FvH4_5g07100
malus_domestica MD06G1158800.v1.1 MD06G1159000.v1.1 MD06G1159200.v1.1 MD14G1165100.v1.1 MD14G1165300.v1.1 MD14G1165400.v1.1 MD14G1165500.v1.1
prunus_persica Prupe.5G158300_v2.0.a1 Prupe.5G158300_v2.0.a1 Prupe.5G158400_v2.0.a1 Prupe.5G158400_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158600_v2.0.a1 Prupe.5G158700_v2.0.a1 Prupe.5G158800_v2.0.a1 Prupe.5G158900_v2.0.a1 Prupe.5G159000_v2.0.a1 Prupe.5G159100_v2.0.a1 Prupe.5G159100_v2.0.a1
pyrus_communis pycom02g00910 pycom06g14200 pycom14g13760 pycom14g13790 pycom14g13800
rosa_chinensis RchiOBHm_Chr5g0019351 RchiOBHm_Chr5g0022771 RchiOBHm_Chr7g0191441 RchiOBHm_Chr7g0191531
rosa_laevigata RLG00000004449 RLG00000032440
rosa_multiflora Rmu_sc0001809.1_g000062 Rmu_sc0005292.1_g000027
rosa_roxburghii Rroxscaffold_1G00074260 Rroxscaffold_6G00390280 Rroxscaffold_7G00168660
rosa_rugosa Rorug05G0049600 Rorug05G0049700 Rorug05G0049800 Rorug06G0510400
rosa_samantha Rh5CG151400 Rh5DG140300 Rh7AG118400 Rh7BG120400 Rh7CG123200 Rh7DG121300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 47, 248
AcsI RAATTY 2 cut(s) 140, 158
AgsI TTSAA 1 cut(s) 189
AluBI AGCT 3 cut(s) 152, 257, 292
AluI AGCT 3 cut(s) 152, 257, 292
Alw26I GTCTC 2 cut(s) 20, 85
AoxI GGCC 2 cut(s) 79, 146
ApeKI GCWGC 1 cut(s) 292
ApoI RAATTY 2 cut(s) 140, 158
AspS9I GGNCC 2 cut(s) 79, 146
BaeI ACNNNNGTAYC 2 cut(s) 33, 66
BbvI GCAGC 1 cut(s) 279
BceAI ACGGC 2 cut(s) 145, 287
BciVI GTATCC 1 cut(s) 61
BclI TGATCA 2 cut(s) 163, 205
BcoDI GTCTC 2 cut(s) 20, 85
BfaI CTAG 1 cut(s) 258
BfuI GTATCC 1 cut(s) 61
BisI GCNGC 1 cut(s) 293
BlsI GCNGC 1 cut(s) 294
BmgT120I GGNCC 2 cut(s) 79, 146
BsaBI GATNNNNATC 1 cut(s) 204
BsaI GGTCTC 1 cut(s) 85
Bse8I GATNNNNATC 1 cut(s) 204
BseGI GGATG 2 cut(s) 18, 166
BseJI GATNNNNATC 1 cut(s) 204
BseMII CTCAG 2 cut(s) 53, 82
BseXI GCAGC 1 cut(s) 279
BsgI GTGCAG 1 cut(s) 283
BshFI GGCC 2 cut(s) 81, 148
BsmAI GTCTC 2 cut(s) 20, 85
BsnI GGCC 2 cut(s) 81, 148
Bso31I GGTCTC 1 cut(s) 85
Bsp143I GATC 4 cut(s) 97, 163, 199, 205
BspACI CCGC 2 cut(s) 47, 248
BspANI GGCC 2 cut(s) 81, 148
BspCNI CTCAG 2 cut(s) 52, 81
BspTNI GGTCTC 1 cut(s) 85
BssMI GATC 4 cut(s) 97, 163, 199, 205
Bst4CI ACNGT 1 cut(s) 122
BstC8I GCNNGC 2 cut(s) 83, 150
BstDEI CTNAG 2 cut(s) 39, 68
BstF5I GGATG 2 cut(s) 18, 166
BstKTI GATC 4 cut(s) 100, 166, 202, 208
BstMAI GTCTC 2 cut(s) 20, 85
BstMBI GATC 4 cut(s) 97, 163, 199, 205
BstMWI GCNNNNNNNGC 1 cut(s) 254
BstV1I GCAGC 1 cut(s) 279
BsuI GTATCC 1 cut(s) 61
BsuRI GGCC 2 cut(s) 81, 148
BtsCI GGATG 2 cut(s) 18, 166
BtsIMutI CAGTG 2 cut(s) 76, 229
Cac8I GCNNGC 2 cut(s) 83, 150
Cfr13I GGNCC 2 cut(s) 79, 146
CviJI RGCY 6 cut(s) 81, 148, 152, 257, 292, 302
CviKI_1 RGCY 6 cut(s) 81, 148, 152, 257, 292, 302
DdeI CTNAG 2 cut(s) 39, 68
DpnI GATC 4 cut(s) 99, 165, 201, 207
DpnII GATC 4 cut(s) 97, 163, 199, 205
Eco31I GGTCTC 1 cut(s) 85
EcoO109I RGGNCCY 1 cut(s) 79
FaiI YATR 2 cut(s) 134, 284
FauI CCCGC 1 cut(s) 241
FbaI TGATCA 2 cut(s) 163, 205
Fnu4HI GCNGC 1 cut(s) 293
FokI GGATG 2 cut(s) 5, 153
Fsp4HI GCNGC 1 cut(s) 293
FspBI CTAG 1 cut(s) 258
GluI GCNGC 1 cut(s) 293
HaeIII GGCC 2 cut(s) 81, 148
HinfI GANTC 1 cut(s) 13
Hpy188I TCNGA 3 cut(s) 42, 102, 199
Hpy188III TCNNGA 1 cut(s) 203
HpyAV CCTTC 1 cut(s) 180
HpyCH4III ACNGT 1 cut(s) 122
HpyCH4V TGCA 3 cut(s) 111, 264, 295
HpyF10VI GCNNNNNNNGC 1 cut(s) 254
HpyF3I CTNAG 2 cut(s) 39, 68
Ksp22I TGATCA 2 cut(s) 163, 205
Kzo9I GATC 4 cut(s) 97, 163, 199, 205
LpnPI CCDG 3 cut(s) 95, 108, 162
Lsp1109I GCAGC 1 cut(s) 279
MaeI CTAG 1 cut(s) 258
MaeIII GTNAC 2 cut(s) 71, 224
MalI GATC 4 cut(s) 99, 165, 201, 207
MboI GATC 4 cut(s) 97, 163, 199, 205
MboII GAAGA 1 cut(s) 177
MluCI AATT 3 cut(s) 140, 158, 285
MlyI GAGTC 1 cut(s) 22
MnlI CCTC 3 cut(s) 65, 77, 238
MseI TTAA 2 cut(s) 8, 179
MspA1I CMGCKG 1 cut(s) 292
MwoI GCNNNNNNNGC 1 cut(s) 254
NdeII GATC 4 cut(s) 97, 163, 199, 205
NmuCI GTSAC 2 cut(s) 71, 224
PkrI GCNGC 1 cut(s) 294
PleI GAGTC 1 cut(s) 21
PpsI GAGTC 1 cut(s) 21
PspPI GGNCC 2 cut(s) 79, 146
PvuII CAGCTG 1 cut(s) 292
SaqAI TTAA 2 cut(s) 8, 179
SatI GCNGC 1 cut(s) 293
Sau3AI GATC 4 cut(s) 97, 163, 199, 205
Sau96I GGNCC 2 cut(s) 79, 146
SchI GAGTC 1 cut(s) 22
SetI ASST 4 cut(s) 154, 259, 263, 294
SgeI CNNG 9 cut(s) 88, 94, 107, 161, 165, 215, 241, 261, 270
Sse9I AATT 3 cut(s) 140, 158, 285
SsiI CCGC 2 cut(s) 47, 248
SspI AATATT 1 cut(s) 106
SspMI CTAG 1 cut(s) 258
TaaI ACNGT 1 cut(s) 122
TasI AATT 3 cut(s) 140, 158, 285
Tru1I TTAA 2 cut(s) 8, 179
Tru9I TTAA 2 cut(s) 8, 179
TscAI CASTG 2 cut(s) 76, 229
TseFI GTSAC 2 cut(s) 71, 224
TseI GCWGC 1 cut(s) 292
Tsp45I GTSAC 2 cut(s) 71, 224
TspRI CASTG 2 cut(s) 76, 229
XapI RAATTY 2 cut(s) 140, 158
XspI CTAG 1 cut(s) 258
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.