Rroxscaffold_7G00168660

zinc finger CCCH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000602
Physical Location & Seq
Forward (+)
9502684 .. 9507425
4742 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00168660.1

Sequence Viewer

Length: 852 bp
ATGGGCTTTAAAGGTGATTCGTTGCAACACTTCGAAGCACGGTGGTCGAGCTATTCTAATTATAAGGATGTCAATGACAAATTGATAGGGACTAGATTTTGGTGCGCTTCGTTTCCAAGTGGCGACGTCGGTGTCCGGTGGACTACATCGAATTGGCATATGGGTGAACTCAAACCGCTTTGTGTTCGGGTTTGCTTGAGTTTACGTGTTTGGGACTCGTGGGTGATCGAAGTTACTTTGTCGGTGGCATCCGAGATCGGAGACGACGTGGTCATGGGGGCGCGGGAAGCATTGATCAATAAGATTTCAAACTGCAACCTCCGCGATGGACGGATGGGAATGAGCAACTACAAGACGAAGCGCCTGGTCCCAGCTATCTTGCATGGTGATTCTGTTTCTCTCCCTTCGTTGTTGCCGGCGGCGGCTTTCACCGACGCTCGGACCTACAAGGTGAAACCCTACCATTTCGGTCCCTTCGATCAAACATATTACGACATGTTCGCGGTCCTCGGCTCCTCCTCGATCAACTTAAATGCTCTTCAAATCACGCCGGACTCCGCCAATGGCAACTTCAGCATGATCAACAACTCGGGGACCAAAACCAATGTTTATAAACAATATCCACCGTCAAATCAAGTTGATGAATTTTCAGAACGACCTCGGACAACGTTTGTGCAGTTTCTTTTTAAGAACAGGGACTGTAAGTTTAAATCTAATTGCAATTATCATCATCCAAAAAGTCGACTGCAGTATCCCCCTCATTTGCACCGAGTGACAAGGGCCGCCTTTGAGACCATTGTTTCGACCTACATACGCTATCATGCCGAAACACCTCCGTTCCGAAGCACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-CCCH zf-CCCH_2

Protein Analysis

283

Amino Acids

32.25

Weight (kDa)

9.24

Isoelectric Point (pI)

36.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000602)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G48195 AT3G48440 AT5G63260 AT5G63260
fragaria_vesca FvH4_5g07100 FvH4_5g07100 FvH4_5g07100 FvH4_5g07100 FvH4_5g07100 FvH4_5g07100 FvH4_5g07100
malus_domestica MD06G1158800.v1.1 MD06G1159000.v1.1 MD06G1159200.v1.1 MD14G1165100.v1.1 MD14G1165300.v1.1 MD14G1165400.v1.1 MD14G1165500.v1.1
prunus_persica Prupe.5G158300_v2.0.a1 Prupe.5G158300_v2.0.a1 Prupe.5G158400_v2.0.a1 Prupe.5G158400_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158600_v2.0.a1 Prupe.5G158700_v2.0.a1 Prupe.5G158800_v2.0.a1 Prupe.5G158900_v2.0.a1 Prupe.5G159000_v2.0.a1 Prupe.5G159100_v2.0.a1 Prupe.5G159100_v2.0.a1
pyrus_communis pycom02g00910 pycom06g14200 pycom14g13760 pycom14g13790 pycom14g13800
rosa_chinensis RchiOBHm_Chr5g0019351 RchiOBHm_Chr5g0022771 RchiOBHm_Chr7g0191441 RchiOBHm_Chr7g0191531
rosa_laevigata RLG00000004449 RLG00000032440
rosa_multiflora Rmu_sc0001809.1_g000062 Rmu_sc0005292.1_g000027
rosa_roxburghii Rroxscaffold_1G00074260 Rroxscaffold_6G00390280 Rroxscaffold_7G00168660
rosa_rugosa Rorug05G0049600 Rorug05G0049700 Rorug05G0049800 Rorug06G0510400
rosa_samantha Rh5CG151400 Rh5DG140300 Rh7AG118400 Rh7BG120400 Rh7CG123200 Rh7DG121300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 63, 612
AasI GACNNNNNNGTC 2 cut(s) 131, 269
AatII GACGTC 1 cut(s) 129
AccI GTMKAC 1 cut(s) 742
AccII CGCG 3 cut(s) 283, 324, 503
AciI CCGC 8 cut(s) 176, 283, 322, 419, 422, 503, 558, 783
AclI AACGTT 1 cut(s) 668
AcsI RAATTY 1 cut(s) 644
AcuI CTGAAG 1 cut(s) 556
AcyI GRCGYC 1 cut(s) 126
AdeI CACNNNGTG 1 cut(s) 772
AfiI CCNNNNNNNGG 1 cut(s) 438
AflIII ACRYGT 2 cut(s) 205, 495
AgsI TTSAA 2 cut(s) 309, 542
AjiI CACGTC 1 cut(s) 268
AjnI CCWGG 1 cut(s) 363
AjuI GAANNNNNNNTTGG 2 cut(s) 554, 586
AluBI AGCT 2 cut(s) 51, 374
AluI AGCT 2 cut(s) 51, 374
Alw26I GTCTC 2 cut(s) 255, 785
AlwNI CAGNNNCTG 1 cut(s) 699
Ama87I CYCGRG 1 cut(s) 589
AoxI GGCC 1 cut(s) 780
ApoI RAATTY 1 cut(s) 644
ArsI GACNNNNNNTTYG 2 cut(s) 784, 816
AspLEI GCGC 3 cut(s) 107, 283, 363
AspS9I GGNCC 6 cut(s) 367, 441, 470, 505, 594, 780
AsuHPI GGTGA 6 cut(s) 26, 176, 235, 398, 421, 463
AsuII TTCGAA 1 cut(s) 33
AvaI CYCGRG 1 cut(s) 589
AvaII GGWCC 5 cut(s) 367, 441, 470, 505, 594
BaeI ACNNNNGTAYC 2 cut(s) 734, 767
BauI CACGAG 1 cut(s) 217
BccI CCATC 2 cut(s) 320, 328
BcgI CGANNNNNNTGC 2 cut(s) 27, 61
BciT130I CCWGG 1 cut(s) 365
BciVI GTATCC 1 cut(s) 762
BclI TGATCA 2 cut(s) 294, 579
BcoDI GTCTC 2 cut(s) 255, 785
BfaI CTAG 1 cut(s) 93
BfmI CTRYAG 1 cut(s) 746
BfoI RGCGCY 1 cut(s) 364
BfuI GTATCC 1 cut(s) 762
BisI GCNGC 3 cut(s) 420, 423, 783
BlsI GCNGC 3 cut(s) 421, 424, 784
Bme1390I CCNGG 1 cut(s) 365
Bme18I GGWCC 5 cut(s) 367, 441, 470, 505, 594
BmeT110I CYCGRG 1 cut(s) 589
BmgBI CACGTC 1 cut(s) 268
BmgT120I GGNCC 6 cut(s) 367, 441, 470, 505, 594, 780
BmiI GGNNCC 4 cut(s) 369, 472, 514, 595
BmrFI CCNGG 1 cut(s) 365
BmsI GCATC 1 cut(s) 257
Bpu14I TTCGAA 1 cut(s) 33
BpuEI CTTGAG 1 cut(s) 217
BsaAI YACGTR 1 cut(s) 206
BsaHI GRCGYC 1 cut(s) 126
BsaI GGTCTC 1 cut(s) 785
BsaJI CCNNGG 2 cut(s) 508, 659
BsaWI WCCGGW 1 cut(s) 135
BsaXI ACNNNNNCTCC 2 cut(s) 252, 282
Bsc4I CCNNNNNNNGG 1 cut(s) 438
Bse118I RCCGGY 1 cut(s) 415
BseBI CCWGG 1 cut(s) 365
BseDI CCNNGG 2 cut(s) 508, 659
BseGI GGATG 4 cut(s) 73, 248, 339, 730
BseLI CCNNNNNNNGG 1 cut(s) 438
BseRI GAGGAG 2 cut(s) 505, 508
BseYI CCCAGC 1 cut(s) 370
BsgI GTGCAG 1 cut(s) 695
Bsh1236I CGCG 3 cut(s) 283, 324, 503
BshFI GGCC 1 cut(s) 782
BsiHKCI CYCGRG 1 cut(s) 589
BsiSI CCGG 3 cut(s) 136, 416, 551
BslFI GGGAC 6 cut(s) 103, 227, 353, 456, 607, 710
BslI CCNNNNNNNGG 1 cut(s) 438
BsmAI GTCTC 2 cut(s) 255, 785
BsmBI CGTCTC 1 cut(s) 255
BsmFI GGGAC 6 cut(s) 103, 227, 353, 456, 607, 710
BsnI GGCC 1 cut(s) 782
Bso31I GGTCTC 1 cut(s) 785
BsoBI CYCGRG 1 cut(s) 589
Bsp119I TTCGAA 1 cut(s) 33
Bsp143I GATC 6 cut(s) 225, 255, 294, 478, 522, 579
BspACI CCGC 8 cut(s) 176, 283, 322, 419, 422, 503, 558, 783
BspANI GGCC 1 cut(s) 782
BspFNI CGCG 3 cut(s) 283, 324, 503
BspLI GGNNCC 4 cut(s) 369, 472, 514, 595
BspMAI CTGCAG 1 cut(s) 750
BspQI GCTCTTC 1 cut(s) 543
BspT104I TTCGAA 1 cut(s) 33
BspTNI GGTCTC 1 cut(s) 785
BsrFI RCCGGY 1 cut(s) 415
BssAI RCCGGY 1 cut(s) 415
BssECI CCNNGG 2 cut(s) 508, 659
BssMI GATC 6 cut(s) 225, 255, 294, 478, 522, 579
BssNI GRCGYC 1 cut(s) 126
BssSI CACGAG 1 cut(s) 217
Bst2BI CACGAG 1 cut(s) 217
Bst2UI CCWGG 1 cut(s) 365
Bst4CI ACNGT 3 cut(s) 42, 627, 701
Bst6I CTCTTC 1 cut(s) 543
BstACI GRCGYC 1 cut(s) 126
BstBAI YACGTR 1 cut(s) 206
BstBI TTCGAA 1 cut(s) 33
BstC8I GCNNGC 1 cut(s) 417
BstF5I GGATG 4 cut(s) 73, 248, 339, 730
BstFNI CGCG 3 cut(s) 283, 324, 503
BstH2I RGCGCY 1 cut(s) 364
BstHHI GCGC 3 cut(s) 107, 283, 363
BstKTI GATC 6 cut(s) 228, 258, 297, 481, 525, 582
BstMAI GTCTC 2 cut(s) 255, 785
BstMBI GATC 6 cut(s) 225, 255, 294, 478, 522, 579
BstMWI GCNNNNNNNGC 3 cut(s) 287, 321, 573
BstNI CCWGG 1 cut(s) 365
BstNSI RCATGY 1 cut(s) 499
BstSCI CCNGG 1 cut(s) 363
BstSFI CTRYAG 1 cut(s) 746
BstUI CGCG 3 cut(s) 283, 324, 503
BsuI GTATCC 1 cut(s) 762
BsuRI GGCC 1 cut(s) 782
BtgZI GCGATG 1 cut(s) 339
BtrI CACGTC 1 cut(s) 268
BtsCI GGATG 4 cut(s) 73, 248, 339, 730
Cac8I GCNNGC 1 cut(s) 417
CaiI CAGNNNCTG 1 cut(s) 699
CfoI GCGC 3 cut(s) 107, 283, 363
Cfr10I RCCGGY 1 cut(s) 415
Cfr13I GGNCC 6 cut(s) 367, 441, 470, 505, 594, 780
CseI GACGC 1 cut(s) 443
CviAII CATG 5 cut(s) 274, 383, 496, 577, 821
CviJI RGCY 6 cut(s) 6, 51, 374, 425, 513, 782
CviKI_1 RGCY 6 cut(s) 6, 51, 374, 425, 513, 782
DpnI GATC 6 cut(s) 227, 257, 296, 480, 524, 581
DpnII GATC 6 cut(s) 225, 255, 294, 478, 522, 579
DraI TTTAAA 2 cut(s) 10, 709
DraIII CACNNNGTG 1 cut(s) 772
DrdI GACNNNNNNGTC 2 cut(s) 131, 269
DseDI GACNNNNNNGTC 2 cut(s) 131, 269
Eam1104I CTCTTC 1 cut(s) 543
EarI CTCTTC 1 cut(s) 543
EciI GGCGGA 1 cut(s) 547
Eco31I GGTCTC 1 cut(s) 785
Eco47I GGWCC 5 cut(s) 367, 441, 470, 505, 594
Eco57I CTGAAG 1 cut(s) 556
Eco88I CYCGRG 1 cut(s) 589
EcoRII CCWGG 1 cut(s) 363
Esp3I CGTCTC 1 cut(s) 255
FaeI CATG 5 cut(s) 277, 386, 499, 580, 824
FaqI GGGAC 6 cut(s) 103, 227, 353, 456, 607, 710
FatI CATG 5 cut(s) 273, 382, 495, 576, 820
FauI CCCGC 1 cut(s) 276
FauNDI CATATG 1 cut(s) 159
FbaI TGATCA 2 cut(s) 294, 579
FblI GTMKAC 1 cut(s) 742
Fnu4HI GCNGC 3 cut(s) 420, 423, 783
FokI GGATG 4 cut(s) 80, 235, 346, 717
Fsp4HI GCNGC 3 cut(s) 420, 423, 783
FspBI CTAG 1 cut(s) 93
GlaI GCGC 3 cut(s) 106, 282, 362
GluI GCNGC 3 cut(s) 420, 423, 783
GsaI CCCAGC 1 cut(s) 374
HaeII RGCGCY 1 cut(s) 364
HaeIII GGCC 1 cut(s) 782
HapII CCGG 3 cut(s) 136, 416, 551
HgaI GACGC 1 cut(s) 443
HhaI GCGC 3 cut(s) 107, 283, 363
Hin1I GRCGYC 1 cut(s) 126
Hin1II CATG 5 cut(s) 277, 386, 499, 580, 824
Hin6I GCGC 3 cut(s) 105, 281, 361
HinP1I GCGC 3 cut(s) 105, 281, 361
HincII GTYRAC 1 cut(s) 743
HindII GTYRAC 1 cut(s) 743
HinfI GANTC 4 cut(s) 17, 215, 389, 554
HpaII CCGG 3 cut(s) 136, 416, 551
HphI GGTGA 6 cut(s) 26, 176, 235, 398, 421, 463
Hpy166II GTNNAC 4 cut(s) 141, 167, 203, 743
Hpy188I TCNGA 6 cut(s) 253, 260, 441, 652, 663, 842
Hpy8I GTNNAC 4 cut(s) 141, 167, 203, 743
Hpy99I CGWCG 4 cut(s) 128, 131, 269, 437
HpyAV CCTTC 2 cut(s) 414, 484
HpyCH4III ACNGT 3 cut(s) 42, 627, 701
HpyCH4IV ACGT 4 cut(s) 126, 205, 267, 668
HpyCH4V TGCA 7 cut(s) 25, 315, 382, 676, 720, 748, 766
HpyF10VI GCNNNNNNNGC 3 cut(s) 287, 321, 573
HpySE526I ACGT 4 cut(s) 126, 205, 267, 668
Hsp92I GRCGYC 1 cut(s) 126
Hsp92II CATG 5 cut(s) 277, 386, 499, 580, 824
HspAI GCGC 3 cut(s) 105, 281, 361
KroI GCCGGC 1 cut(s) 415
KroNI GCCGGC 1 cut(s) 417
Ksp22I TGATCA 2 cut(s) 294, 579
Kzo9I GATC 6 cut(s) 225, 255, 294, 478, 522, 579
LguI GCTCTTC 1 cut(s) 543
LmnI GCTCC 1 cut(s) 518
LpnPI CCDG 7 cut(s) 149, 350, 377, 384, 429, 564, 679
LweI GCATC 1 cut(s) 257
MaeI CTAG 1 cut(s) 93
MaeII ACGT 4 cut(s) 126, 205, 267, 668
MaeIII GTNAC 2 cut(s) 232, 772
MalI GATC 6 cut(s) 227, 257, 296, 480, 524, 581
MboI GATC 6 cut(s) 225, 255, 294, 478, 522, 579
MboII GAAGA 1 cut(s) 530
MluCI AATT 6 cut(s) 58, 80, 151, 644, 715, 721
MlyI GAGTC 2 cut(s) 209, 548
MnlI CCTC 7 cut(s) 329, 518, 526, 529, 669, 768, 843
MroNI GCCGGC 1 cut(s) 415
MseI TTAA 4 cut(s) 9, 530, 687, 708
MslI CAYNNNNRTG 1 cut(s) 162
MspI CCGG 3 cut(s) 136, 416, 551
MspR9I CCNGG 1 cut(s) 365
MvaI CCWGG 1 cut(s) 365
MvnI CGCG 3 cut(s) 283, 324, 503
MwoI GCNNNNNNNGC 3 cut(s) 287, 321, 573
NaeI GCCGGC 1 cut(s) 417
NdeI CATATG 1 cut(s) 159
NdeII GATC 6 cut(s) 225, 255, 294, 478, 522, 579
NgoMIV GCCGGC 1 cut(s) 415
NlaIII CATG 5 cut(s) 277, 386, 499, 580, 824
NlaIV GGNNCC 4 cut(s) 369, 472, 514, 595
NmeAIII GCCGAG 1 cut(s) 489
NmuCI GTSAC 1 cut(s) 772
NspI RCATGY 1 cut(s) 499
NspV TTCGAA 1 cut(s) 33
PciI ACATGT 1 cut(s) 495
PciSI GCTCTTC 1 cut(s) 543
PcsI WCGNNNNNNNCGW 2 cut(s) 264, 474
PdiI GCCGGC 1 cut(s) 417
PfeI GAWTC 2 cut(s) 17, 389
PflFI GACNNNGTC 1 cut(s) 269
PkrI GCNGC 3 cut(s) 421, 424, 784
PleI GAGTC 2 cut(s) 209, 548
PpsI GAGTC 2 cut(s) 209, 548
Ppu21I YACGTR 1 cut(s) 206
PscI ACATGT 1 cut(s) 495
PsiI TTATAA 2 cut(s) 63, 612
Psp1406I AACGTT 1 cut(s) 668
Psp6I CCWGG 1 cut(s) 363
PspFI CCCAGC 1 cut(s) 370
PspGI CCWGG 1 cut(s) 363
PspN4I GGNNCC 4 cut(s) 369, 472, 514, 595
PspPI GGNCC 6 cut(s) 367, 441, 470, 505, 594, 780
PstI CTGCAG 1 cut(s) 750
PstNI CAGNNNCTG 1 cut(s) 699
PsyI GACNNNGTC 1 cut(s) 269
RseI CAYNNNNRTG 1 cut(s) 162
SalI GTCGAC 1 cut(s) 741
SapI GCTCTTC 1 cut(s) 543
SaqAI TTAA 4 cut(s) 9, 530, 687, 708
SatI GCNGC 3 cut(s) 420, 423, 783
Sau3AI GATC 6 cut(s) 225, 255, 294, 478, 522, 579
Sau96I GGNCC 6 cut(s) 367, 441, 470, 505, 594, 780
SchI GAGTC 2 cut(s) 209, 548
ScrFI CCNGG 1 cut(s) 365
SfaNI GCATC 1 cut(s) 257
SfcI CTRYAG 1 cut(s) 746
SfuI TTCGAA 1 cut(s) 33
SinI GGWCC 5 cut(s) 367, 441, 470, 505, 594
SmiMI CAYNNNNRTG 1 cut(s) 162
SmlI CTYRAG 1 cut(s) 196
SmoI CTYRAG 1 cut(s) 196
Sse9I AATT 6 cut(s) 58, 80, 151, 644, 715, 721
SsiI CCGC 8 cut(s) 176, 283, 322, 419, 422, 503, 558, 783
SspMI CTAG 1 cut(s) 93
StyD4I CCNGG 1 cut(s) 363
TaaI ACNGT 3 cut(s) 42, 627, 701
TaiI ACGT 4 cut(s) 129, 208, 270, 671
TaqI TCGA 8 cut(s) 33, 47, 149, 228, 477, 521, 742, 803
TaqII GACCGA 1 cut(s) 458
TasI AATT 6 cut(s) 58, 80, 151, 644, 715, 721
TauI GCSGC 3 cut(s) 422, 425, 785
TfiI GAWTC 2 cut(s) 17, 389
Tru1I TTAA 4 cut(s) 9, 530, 687, 708
Tru9I TTAA 4 cut(s) 9, 530, 687, 708
TseFI GTSAC 1 cut(s) 772
Tsp45I GTSAC 1 cut(s) 772
TspDTI ATGAA 1 cut(s) 657
TspGWI ACGGA 2 cut(s) 346, 825
Tth111I GACNNNGTC 1 cut(s) 269
VpaK11BI GGWCC 5 cut(s) 367, 441, 470, 505, 594
XapI RAATTY 1 cut(s) 644
XceI RCATGY 1 cut(s) 499
XmiI GTMKAC 1 cut(s) 742
XspI CTAG 1 cut(s) 93
ZraI GACGTC 1 cut(s) 127
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.