Prupe.5G158900_v2.0.a1

zinc finger CCCH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0000602
Physical Location & Seq
Reverse (-)
14072556 .. 14073792
1237 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G158900.1

Sequence Viewer

Length: 219 bp
ATGCCCGCACGTCAACCTTATCTTGTGAACAACTCAATGACTGGGACCAACGTCTATAAACAATACCTACAGCAGCAGCAAGCTGAAGAATTCCCAGAAAGACCTGGCCAACCTGTTTGCAGTTATTTCTTAAGAACGGGTGATTGTAAGTTTAAATCCAACTGCAAGTATCACCATCCGAAAACTCAGACTGCAGTATTCCCCTCATGCACCCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-CCCH zf-CCCH_2

Protein Analysis

73

Amino Acids

8.33

Weight (kDa)

9.02

Isoelectric Point (pI)

64.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000602)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G48195 AT3G48440 AT5G63260 AT5G63260
fragaria_vesca FvH4_5g07100 FvH4_5g07100 FvH4_5g07100 FvH4_5g07100 FvH4_5g07100 FvH4_5g07100 FvH4_5g07100
malus_domestica MD06G1158800.v1.1 MD06G1159000.v1.1 MD06G1159200.v1.1 MD14G1165100.v1.1 MD14G1165300.v1.1 MD14G1165400.v1.1 MD14G1165500.v1.1
prunus_persica Prupe.5G158300_v2.0.a1 Prupe.5G158300_v2.0.a1 Prupe.5G158400_v2.0.a1 Prupe.5G158400_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158600_v2.0.a1 Prupe.5G158700_v2.0.a1 Prupe.5G158800_v2.0.a1 Prupe.5G158900_v2.0.a1 Prupe.5G159000_v2.0.a1 Prupe.5G159100_v2.0.a1 Prupe.5G159100_v2.0.a1
pyrus_communis pycom02g00910 pycom06g14200 pycom14g13760 pycom14g13790 pycom14g13800
rosa_chinensis RchiOBHm_Chr5g0019351 RchiOBHm_Chr5g0022771 RchiOBHm_Chr7g0191441 RchiOBHm_Chr7g0191531
rosa_laevigata RLG00000004449 RLG00000032440
rosa_multiflora Rmu_sc0001809.1_g000062 Rmu_sc0005292.1_g000027
rosa_roxburghii Rroxscaffold_1G00074260 Rroxscaffold_6G00390280 Rroxscaffold_7G00168660
rosa_rugosa Rorug05G0049600 Rorug05G0049700 Rorug05G0049800 Rorug06G0510400
rosa_samantha Rh5CG151400 Rh5DG140300 Rh7AG118400 Rh7BG120400 Rh7CG123200 Rh7DG121300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 6
AcoI YGGCCR 1 cut(s) 106
AcsI RAATTY 1 cut(s) 89
AcuI CTGAAG 1 cut(s) 105
AflII CTTAAG 1 cut(s) 130
AjiI CACGTC 1 cut(s) 11
AjnI CCWGG 1 cut(s) 103
AluBI AGCT 1 cut(s) 83
AluI AGCT 1 cut(s) 83
AoxI GGCC 1 cut(s) 106
ApeKI GCWGC 2 cut(s) 73, 76
ApoI RAATTY 1 cut(s) 89
AspS9I GGNCC 1 cut(s) 45
AsuHPI GGTGA 2 cut(s) 152, 164
AvaII GGWCC 1 cut(s) 45
BalI TGGCCA 1 cut(s) 108
BbvI GCAGC 2 cut(s) 85, 88
BccI CCATC 1 cut(s) 183
BciT130I CCWGG 1 cut(s) 105
BfmI CTRYAG 2 cut(s) 68, 192
BfrI CTTAAG 1 cut(s) 130
BisI GCNGC 2 cut(s) 74, 77
BlsI GCNGC 2 cut(s) 75, 78
Bme1390I CCNGG 1 cut(s) 105
Bme18I GGWCC 1 cut(s) 45
BmgBI CACGTC 1 cut(s) 11
BmgT120I GGNCC 1 cut(s) 45
BmiI GGNNCC 1 cut(s) 46
BmrFI CCNGG 1 cut(s) 105
BmrI ACTGGG 1 cut(s) 51
BmuI ACTGGG 1 cut(s) 51
BoxI GACNNNNGTC 1 cut(s) 50
Bse1I ACTGG 1 cut(s) 46
BseBI CCWGG 1 cut(s) 105
BseGI GGATG 1 cut(s) 175
BseMII CTCAG 1 cut(s) 200
BseNI ACTGG 1 cut(s) 46
BseXI GCAGC 2 cut(s) 85, 88
BshFI GGCC 1 cut(s) 108
BslFI GGGAC 1 cut(s) 58
BsmFI GGGAC 1 cut(s) 58
BsnI GGCC 1 cut(s) 108
BspACI CCGC 1 cut(s) 6
BspANI GGCC 1 cut(s) 108
BspCNI CTCAG 1 cut(s) 199
BspLI GGNNCC 1 cut(s) 46
BspMAI CTGCAG 1 cut(s) 196
BspTI CTTAAG 1 cut(s) 130
BsrI ACTGG 1 cut(s) 46
Bst2UI CCWGG 1 cut(s) 105
BstAFI CTTAAG 1 cut(s) 130
BstC8I GCNNGC 2 cut(s) 6, 81
BstDEI CTNAG 1 cut(s) 186
BstF5I GGATG 1 cut(s) 175
BstNI CCWGG 1 cut(s) 105
BstPAI GACNNNNGTC 1 cut(s) 50
BstSCI CCNGG 1 cut(s) 103
BstSFI CTRYAG 2 cut(s) 68, 192
BstV1I GCAGC 2 cut(s) 85, 88
BsuRI GGCC 1 cut(s) 108
BtrI CACGTC 1 cut(s) 11
BtsCI GGATG 1 cut(s) 175
Cac8I GCNNGC 2 cut(s) 6, 81
Cfr13I GGNCC 1 cut(s) 45
CviAII CATG 1 cut(s) 207
CviJI RGCY 2 cut(s) 83, 108
CviKI_1 RGCY 2 cut(s) 83, 108
DdeI CTNAG 1 cut(s) 186
DraI TTTAAA 1 cut(s) 154
EaeI YGGCCR 1 cut(s) 106
Eco47I GGWCC 1 cut(s) 45
Eco57I CTGAAG 1 cut(s) 105
EcoRI GAATTC 1 cut(s) 89
EcoRII CCWGG 1 cut(s) 103
FaeI CATG 1 cut(s) 210
FaiI YATR 2 cut(s) 57, 208
FaqI GGGAC 1 cut(s) 58
FatI CATG 1 cut(s) 206
FauI CCCGC 1 cut(s) 13
Fnu4HI GCNGC 2 cut(s) 74, 77
FokI GGATG 1 cut(s) 162
Fsp4HI GCNGC 2 cut(s) 74, 77
GluI GCNGC 2 cut(s) 74, 77
HaeIII GGCC 1 cut(s) 108
Hin1II CATG 1 cut(s) 210
HincII GTYRAC 1 cut(s) 14
HindII GTYRAC 1 cut(s) 14
HphI GGTGA 2 cut(s) 152, 164
Hpy166II GTNNAC 2 cut(s) 14, 28
Hpy188I TCNGA 2 cut(s) 180, 189
Hpy8I GTNNAC 2 cut(s) 14, 28
HpyCH4IV ACGT 2 cut(s) 10, 51
HpyCH4V TGCA 4 cut(s) 120, 165, 194, 210
HpyF3I CTNAG 1 cut(s) 186
HpySE526I ACGT 2 cut(s) 10, 51
Hsp92II CATG 1 cut(s) 210
LpnPI CCDG 5 cut(s) 27, 90, 108, 117, 126
Lsp1109I GCAGC 2 cut(s) 85, 88
MaeII ACGT 2 cut(s) 10, 51
MboII GAAGA 1 cut(s) 98
MlsI TGGCCA 1 cut(s) 108
MluCI AATT 1 cut(s) 89
MluNI TGGCCA 1 cut(s) 108
MmeI TCCRAC 1 cut(s) 183
MnlI CCTC 1 cut(s) 214
Mox20I TGGCCA 1 cut(s) 108
MscI TGGCCA 1 cut(s) 108
MseI TTAA 2 cut(s) 131, 153
Msp20I TGGCCA 1 cut(s) 108
MspCI CTTAAG 1 cut(s) 130
MspR9I CCNGG 1 cut(s) 105
MvaI CCWGG 1 cut(s) 105
NlaIII CATG 1 cut(s) 210
NlaIV GGNNCC 1 cut(s) 46
PkrI GCNGC 2 cut(s) 75, 78
PshAI GACNNNNGTC 1 cut(s) 50
Psp6I CCWGG 1 cut(s) 103
PspGI CCWGG 1 cut(s) 103
PspN4I GGNNCC 1 cut(s) 46
PspPI GGNCC 1 cut(s) 45
PstI CTGCAG 1 cut(s) 196
SaqAI TTAA 2 cut(s) 131, 153
SatI GCNGC 2 cut(s) 74, 77
Sau96I GGNCC 1 cut(s) 45
ScrFI CCNGG 1 cut(s) 105
SetI ASST 7 cut(s) 13, 19, 54, 69, 85, 106, 115
SfcI CTRYAG 2 cut(s) 68, 192
SinI GGWCC 1 cut(s) 45
SmlI CTYRAG 1 cut(s) 130
SmoI CTYRAG 1 cut(s) 130
Sse9I AATT 1 cut(s) 89
SsiI CCGC 1 cut(s) 6
StyD4I CCNGG 1 cut(s) 103
TaiI ACGT 2 cut(s) 13, 54
TasI AATT 1 cut(s) 89
Tru1I TTAA 2 cut(s) 131, 153
Tru9I TTAA 2 cut(s) 131, 153
TseI GCWGC 2 cut(s) 73, 76
Vha464I CTTAAG 1 cut(s) 130
VpaK11BI GGWCC 1 cut(s) 45
XapI RAATTY 1 cut(s) 89
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.