MD06G1159000.v1.1

zinc finger CCCH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0000602
Physical Location & Seq
Reverse (-)
30061829 .. 30062361
533 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1159000.v1.1.491

Sequence Viewer

Length: 237 bp
ATGCCTGCACGTCCACCATATATGATGAACAACTCAGTGACTGAGACCAACGTCTACAAACAATATCCACACCAGAATCAAGTTGAAGAGTTCCCAGAAAGACCTGGCCAACCTGATTGCAGTTATTTCTCAAGAACGGGAGATTGCAAGTTTAAATCTAATTGCAAATATCACCATCCAAAAACTCAGACTGCCGTAGCCCCCCATTCACACTCGGTGACAAAGGCCTGCCGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-CCCH zf-CCCH_2

Protein Analysis

79

Amino Acids

9.02

Weight (kDa)

9.0

Isoelectric Point (pI)

47.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-CCCH PF00642 35 - 61 1.9e-07 Zinc finger C-x8-C-x5-C-x3-H type (and similar)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000602)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G48195 AT3G48440 AT5G63260 AT5G63260
fragaria_vesca FvH4_5g07100 FvH4_5g07100 FvH4_5g07100 FvH4_5g07100 FvH4_5g07100 FvH4_5g07100 FvH4_5g07100
malus_domestica MD06G1158800.v1.1 MD06G1159000.v1.1 MD06G1159200.v1.1 MD14G1165100.v1.1 MD14G1165300.v1.1 MD14G1165400.v1.1 MD14G1165500.v1.1
prunus_persica Prupe.5G158300_v2.0.a1 Prupe.5G158300_v2.0.a1 Prupe.5G158400_v2.0.a1 Prupe.5G158400_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158600_v2.0.a1 Prupe.5G158700_v2.0.a1 Prupe.5G158800_v2.0.a1 Prupe.5G158900_v2.0.a1 Prupe.5G159000_v2.0.a1 Prupe.5G159100_v2.0.a1 Prupe.5G159100_v2.0.a1
pyrus_communis pycom02g00910 pycom06g14200 pycom14g13760 pycom14g13790 pycom14g13800
rosa_chinensis RchiOBHm_Chr5g0019351 RchiOBHm_Chr5g0022771 RchiOBHm_Chr7g0191441 RchiOBHm_Chr7g0191531
rosa_laevigata RLG00000004449 RLG00000032440
rosa_multiflora Rmu_sc0001809.1_g000062 Rmu_sc0005292.1_g000027
rosa_roxburghii Rroxscaffold_1G00074260 Rroxscaffold_6G00390280 Rroxscaffold_7G00168660
rosa_rugosa Rorug05G0049600 Rorug05G0049700 Rorug05G0049800 Rorug06G0510400
rosa_samantha Rh5CG151400 Rh5DG140300 Rh7AG118400 Rh7BG120400 Rh7CG123200 Rh7DG121300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 54
AcoI YGGCCR 1 cut(s) 106
AdeI CACNNNGTG 1 cut(s) 217
AgsI TTSAA 1 cut(s) 86
AjiI CACGTC 1 cut(s) 11
AjnI CCWGG 1 cut(s) 103
Alw26I GTCTC 1 cut(s) 38
AlwNI CAGNNNCTG 1 cut(s) 41
AoxI GGCC 2 cut(s) 106, 225
AsuHPI GGTGA 2 cut(s) 164, 229
BalI TGGCCA 1 cut(s) 108
BccI CCATC 1 cut(s) 183
BceAI ACGGC 2 cut(s) 179, 216
BciT130I CCWGG 1 cut(s) 105
BcoDI GTCTC 1 cut(s) 38
Bme1390I CCNGG 1 cut(s) 105
BmgBI CACGTC 1 cut(s) 11
BmrFI CCNGG 1 cut(s) 105
BoxI GACNNNNGTC 1 cut(s) 50
BpuEI CTTGAG 1 cut(s) 115
BsaI GGTCTC 1 cut(s) 38
BseBI CCWGG 1 cut(s) 105
BseGI GGATG 1 cut(s) 175
BseMII CTCAG 3 cut(s) 33, 48, 200
BshFI GGCC 2 cut(s) 108, 227
BsmAI GTCTC 1 cut(s) 38
BsnI GGCC 2 cut(s) 108, 227
Bso31I GGTCTC 1 cut(s) 38
BspANI GGCC 2 cut(s) 108, 227
BspCNI CTCAG 3 cut(s) 34, 47, 199
BspTNI GGTCTC 1 cut(s) 38
Bst2UI CCWGG 1 cut(s) 105
Bst6I CTCTTC 1 cut(s) 81
BstC8I GCNNGC 2 cut(s) 6, 229
BstDEI CTNAG 3 cut(s) 34, 42, 186
BstF5I GGATG 1 cut(s) 175
BstMAI GTCTC 1 cut(s) 38
BstNI CCWGG 1 cut(s) 105
BstPAI GACNNNNGTC 1 cut(s) 50
BstSCI CCNGG 1 cut(s) 103
BsuRI GGCC 2 cut(s) 108, 227
BtrI CACGTC 1 cut(s) 11
BtsCI GGATG 1 cut(s) 175
BtsIMutI CAGTG 1 cut(s) 42
Cac8I GCNNGC 2 cut(s) 6, 229
CaiI CAGNNNCTG 1 cut(s) 41
CviJI RGCY 3 cut(s) 108, 200, 227
CviKI_1 RGCY 3 cut(s) 108, 200, 227
DdeI CTNAG 3 cut(s) 34, 42, 186
DraI TTTAAA 1 cut(s) 154
DraIII CACNNNGTG 1 cut(s) 217
EaeI YGGCCR 1 cut(s) 106
Eam1104I CTCTTC 1 cut(s) 81
EarI CTCTTC 1 cut(s) 81
Eco147I AGGCCT 1 cut(s) 227
Eco31I GGTCTC 1 cut(s) 38
EcoRII CCWGG 1 cut(s) 103
FaiI YATR 3 cut(s) 19, 21, 23
FblI GTMKAC 1 cut(s) 54
FokI GGATG 1 cut(s) 162
HaeIII GGCC 2 cut(s) 108, 227
HinfI GANTC 1 cut(s) 76
HphI GGTGA 2 cut(s) 164, 229
Hpy166II GTNNAC 2 cut(s) 14, 55
Hpy188I TCNGA 1 cut(s) 189
Hpy188III TCNNGA 1 cut(s) 132
Hpy8I GTNNAC 2 cut(s) 14, 55
HpyCH4IV ACGT 2 cut(s) 10, 51
HpyCH4V TGCA 4 cut(s) 8, 120, 147, 165
HpyF3I CTNAG 3 cut(s) 34, 42, 186
HpySE526I ACGT 2 cut(s) 10, 51
LpnPI CCDG 6 cut(s) 18, 86, 90, 108, 117, 126
MaeII ACGT 2 cut(s) 10, 51
MaeIII GTNAC 2 cut(s) 37, 217
MboII GAAGA 1 cut(s) 98
MlsI TGGCCA 1 cut(s) 108
MluCI AATT 1 cut(s) 160
MluNI TGGCCA 1 cut(s) 108
Mox20I TGGCCA 1 cut(s) 108
MscI TGGCCA 1 cut(s) 108
MseI TTAA 1 cut(s) 153
Msp20I TGGCCA 1 cut(s) 108
MspR9I CCNGG 1 cut(s) 105
MvaI CCWGG 1 cut(s) 105
NmuCI GTSAC 2 cut(s) 37, 217
PceI AGGCCT 1 cut(s) 227
PfeI GAWTC 1 cut(s) 76
PshAI GACNNNNGTC 1 cut(s) 50
Psp6I CCWGG 1 cut(s) 103
PspGI CCWGG 1 cut(s) 103
PstNI CAGNNNCTG 1 cut(s) 41
SaqAI TTAA 1 cut(s) 153
ScrFI CCNGG 1 cut(s) 105
SetI ASST 4 cut(s) 13, 54, 106, 115
SmlI CTYRAG 1 cut(s) 130
SmoI CTYRAG 1 cut(s) 130
Sse9I AATT 1 cut(s) 160
SseBI AGGCCT 1 cut(s) 227
StuI AGGCCT 1 cut(s) 227
StyD4I CCNGG 1 cut(s) 103
TaiI ACGT 2 cut(s) 13, 54
TasI AATT 1 cut(s) 160
TfiI GAWTC 1 cut(s) 76
Tru1I TTAA 1 cut(s) 153
Tru9I TTAA 1 cut(s) 153
TscAI CASTG 1 cut(s) 42
TseFI GTSAC 2 cut(s) 37, 217
Tsp45I GTSAC 2 cut(s) 37, 217
TspDTI ATGAA 1 cut(s) 41
TspRI CASTG 1 cut(s) 42
XmiI GTMKAC 1 cut(s) 54
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.