MD06G1159200.v1.1

zinc finger CCCH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0000602
Physical Location & Seq
Reverse (-)
30074900 .. 30079081
4182 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1159200.v1.1.491

Sequence Viewer

Length: 1647 bp
ATGGCACTCTCTGAAGCAACCTCTGTTGTTCCCCCAAATCCCGAAACCCCCAGCACCAATCACGCTCATTCCGACCAGGGGTCTCTGCCTTCCTCCCCGGATCCCGATCCCACACCGTCTGATCTAGATCATGCGGTCCTCGACGAGCTTCATAAACTGGATTTGAAAGAGCCGGTGGAGGAGGGGGATGGAGAACCTGATGAGTTGCAGGAGCTGGATTCGACAGAGAAGGTGGAGGAGGACGGAGTTGGTGAGTTGCAGAATGTGGATTTGAAGGAGGAGGAGGACGGAGTTGGTGAGTTGCAGAAGGTGGATTTGAAGGAGGAGGAGGACGGAGCTGGTGAGTTGCAGAAGCTGGATTTGAACGAGGAGGAGGAGGGCGGAGAGGGAGAGGAAGAAGAAGAGAAGAGTTCCGGTGAGAGAGAGGTTGAGATTTTAAATGGAGAGGAAAATGAGAGGCAGAGTGAGCAGAGTTATCAGAGCGACGGAGGAGGCGGAGGAGAAGGATGGGGAGGAAATCAGGGGTGGGAGGAGGATGGAGGTGAGGTGGAGGAGAAGAAGGCGGAGGAAACTCAGGAAAGTAACAGAAGGTATCAGTACCCGGTGAGGCCGGAAGCTGAAGACTGTTCGTATTATCTAAAGACCGGGTCTTGCAAGTTTGGATCCAATTGCAAGTTTAATCACCCTGTTAGTAGGAAAACCAACCAGGTGCCTAGGGAAAGGGTAAAGGATGAGTCGGCAGAGAATCCAAGCCAGACGGAATGCAAGTATTACTTGAGGTCAGGGGGATGCAAGTATGGGAAAGATTGCAGATACAGCCACAGCAAAGTGAAACCTTCTGTAGCTCCAGTTCTTGAGCTTAACTTTTTGGGCCTGCCAATTCGACCGGGTGAGAGAGAGTGTCCCTACTATATGCGAACTGGCTCCTGCAAGTATGCATCAAACTGCAGGTTTAACCACCCTGATCCTACAGCTATAGGAGGATCTGATCCCCCATCTAGATTTGGCAAAGATGGTCCTGCATCGTTACAAGTTGCATCACAATCAACAGTGGCACTGTGGTCTGCACCACGGCCATTGAATGAGGCTCCAGTTTACACGCCAATGATGATTCCACCACCTCAAGGGGTTTCTTCTCAAAATTCAGAATGGAATGGTTGTCGGGCTCCAGCATATATACCAGAAAGCAGCATGCCTGCACGTCCACCGTATATGATGAACAACTCAGTGACTGAAACCAACGTCTACAAACAATATCCACTCCAGATTCAAGTTGAAGAGTTCCCAGAAAGACCTGGCCAACCTGATTGCAGTTATTTCTTAAGAACGGGAGATTGCAAGTTTAAATCTAATTGCAAATATCACCATCCAAAAACTCAGACTGCCGTAGCCCCCCTATTCACACTCAGTGACAAAGGCCTGCCGTTGAGACCAGATCAGAACATTTGCACACATTACAGTCGCTACGGCATTTGCAAATTTGGGCCAGCTTGTAAATTTGACCACTCGTCACATATATCATCTTCAACTACATCTGGTCCTGATCATCAACTTCCTTATGGTGACTGGGCGACTACTAATGGGGCGGGAATAGCTGGGAGCAGAAGTGGAACTGATGGTACAAGTCAGCCGCAGCCTGTGCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-CCCH zf-CCCH_2

Protein Analysis

549

Amino Acids

60.3

Weight (kDa)

4.68

Isoelectric Point (pI)

63.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-CCCH PF00642 207 - 229 2.1e-10 Zinc finger C-x8-C-x5-C-x3-H type (and similar)
zf-CCCH PF00642 252 - 276 5.4e-07 Zinc finger C-x8-C-x5-C-x3-H type (and similar)
zf-CCCH PF00642 296 - 321 8.9e-09 Zinc finger C-x8-C-x5-C-x3-H type (and similar)
zf-CCCH PF00642 432 - 458 2e-06 Zinc finger C-x8-C-x5-C-x3-H type (and similar)
zf-CCCH PF00642 479 - 503 3.2e-08 Zinc finger C-x8-C-x5-C-x3-H type (and similar)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000602)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G48195 AT3G48440 AT5G63260 AT5G63260
fragaria_vesca FvH4_5g07100 FvH4_5g07100 FvH4_5g07100 FvH4_5g07100 FvH4_5g07100 FvH4_5g07100 FvH4_5g07100
malus_domestica MD06G1158800.v1.1 MD06G1159000.v1.1 MD06G1159200.v1.1 MD14G1165100.v1.1 MD14G1165300.v1.1 MD14G1165400.v1.1 MD14G1165500.v1.1
prunus_persica Prupe.5G158300_v2.0.a1 Prupe.5G158300_v2.0.a1 Prupe.5G158400_v2.0.a1 Prupe.5G158400_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158600_v2.0.a1 Prupe.5G158700_v2.0.a1 Prupe.5G158800_v2.0.a1 Prupe.5G158900_v2.0.a1 Prupe.5G159000_v2.0.a1 Prupe.5G159100_v2.0.a1 Prupe.5G159100_v2.0.a1
pyrus_communis pycom02g00910 pycom06g14200 pycom14g13760 pycom14g13790 pycom14g13800
rosa_chinensis RchiOBHm_Chr5g0019351 RchiOBHm_Chr5g0022771 RchiOBHm_Chr7g0191441 RchiOBHm_Chr7g0191531
rosa_laevigata RLG00000004449 RLG00000032440
rosa_multiflora Rmu_sc0001809.1_g000062 Rmu_sc0005292.1_g000027
rosa_roxburghii Rroxscaffold_1G00074260 Rroxscaffold_6G00390280 Rroxscaffold_7G00168660
rosa_rugosa Rorug05G0049600 Rorug05G0049700 Rorug05G0049800 Rorug06G0510400
rosa_samantha Rh5CG151400 Rh5DG140300 Rh7AG118400 Rh7BG120400 Rh7CG123200 Rh7DG121300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 939
AccB1I GGYRCC 1 cut(s) 709
AccI GTMKAC 1 cut(s) 1245
AciI CCGC 6 cut(s) 134, 381, 495, 563, 1586, 1631
AclWI GGATC 8 cut(s) 95, 101, 108, 657, 670, 959, 983, 991
AcoI YGGCCR 2 cut(s) 1073, 1297
AcsI RAATTY 3 cut(s) 1141, 1478, 1496
AcuI CTGAAG 2 cut(s) 33, 639
AdeI CACNNNGTG 1 cut(s) 1409
AfaI GTAC 2 cut(s) 599, 1621
AfiI CCNNNNNNNGG 2 cut(s) 78, 1124
AflII CTTAAG 1 cut(s) 1321
AgsI TTSAA 8 cut(s) 166, 274, 319, 364, 1081, 1271, 1277, 1527
AhdI GACNNNNNGTC 2 cut(s) 79, 1507
AjiI CACGTC 1 cut(s) 1202
AjnI CCWGG 3 cut(s) 75, 705, 1294
Alw26I GTCTC 2 cut(s) 87, 1423
AlwI GGATC 8 cut(s) 95, 101, 108, 657, 670, 959, 983, 991
AlwNI CAGNNNCTG 3 cut(s) 214, 355, 1232
AoxI GGCC 6 cut(s) 608, 871, 1073, 1297, 1417, 1484
ApeKI GCWGC 2 cut(s) 1188, 1633
ApoI RAATTY 3 cut(s) 1141, 1478, 1496
AspA2I CCTAGG 1 cut(s) 713
AspS9I GGNCC 5 cut(s) 136, 871, 1016, 1484, 1538
AsuC2I CCSGG 4 cut(s) 98, 602, 646, 888
AvaII GGWCC 3 cut(s) 136, 1016, 1538
AvrII CCTAGG 1 cut(s) 713
BalI TGGCCA 1 cut(s) 1299
BamHI GGATCC 2 cut(s) 100, 662
BanI GGYRCC 1 cut(s) 709
BanII GRGCYC 1 cut(s) 1168
BbsI GAAGAC 1 cut(s) 627
BbvI GCAGC 1 cut(s) 1200
BccI CCATC 7 cut(s) 182, 501, 530, 1003, 1007, 1374, 1610
BceAI ACGGC 4 cut(s) 1088, 1370, 1408, 1483
BciT130I CCWGG 3 cut(s) 77, 707, 1296
BclI TGATCA 1 cut(s) 1543
BcnI CCSGG 4 cut(s) 98, 602, 646, 888
BcoDI GTCTC 2 cut(s) 87, 1423
BfaI CTAG 3 cut(s) 125, 714, 999
BfmI CTRYAG 4 cut(s) 840, 946, 969, 975
BfrI CTTAAG 1 cut(s) 1321
BfuAI ACCTGC 1 cut(s) 939
BisI GCNGC 3 cut(s) 1189, 1631, 1634
BlnI CCTAGG 1 cut(s) 713
BlsI GCNGC 3 cut(s) 1190, 1632, 1635
Bme1390I CCNGG 7 cut(s) 77, 98, 602, 646, 707, 888, 1296
Bme18I GGWCC 3 cut(s) 136, 1016, 1538
BmeRI GACNNNNNGTC 2 cut(s) 79, 1507
BmgBI CACGTC 1 cut(s) 1202
BmgT120I GGNCC 5 cut(s) 136, 871, 1016, 1484, 1538
BmiI GGNNCC 6 cut(s) 102, 664, 711, 925, 1089, 1167
BmrFI CCNGG 7 cut(s) 77, 98, 602, 646, 707, 888, 1296
BmrI ACTGGG 1 cut(s) 1576
BmsI GCATC 4 cut(s) 779, 947, 1031, 1046
BmuI ACTGGG 1 cut(s) 1576
BpiI GAAGAC 1 cut(s) 627
BpmI CTGGAG 4 cut(s) 831, 1074, 1152, 1247
BpuEI CTTGAG 3 cut(s) 796, 875, 1107
BpuMI CCSGG 4 cut(s) 98, 602, 646, 888
BsaBI GATNNNNATC 2 cut(s) 105, 126
BsaI GGTCTC 2 cut(s) 87, 1423
BsaJI CCNNGG 4 cut(s) 76, 96, 713, 1070
BsaWI WCCGGW 1 cut(s) 413
BsaXI ACNNNNNCTCC 4 cut(s) 531, 561, 1591, 1621
Bsc4I CCNNNNNNNGG 2 cut(s) 78, 1124
Bse118I RCCGGY 1 cut(s) 172
Bse1I ACTGG 5 cut(s) 162, 848, 925, 1091, 1571
Bse8I GATNNNNATC 2 cut(s) 105, 126
BseBI CCWGG 3 cut(s) 77, 707, 1296
BseDI CCNNGG 4 cut(s) 76, 96, 713, 1070
BseGI GGATG 6 cut(s) 193, 512, 541, 736, 794, 1366
BseJI GATNNNNATC 2 cut(s) 105, 126
BseLI CCNNNNNNNGG 2 cut(s) 78, 1124
BseMII CTCAG 4 cut(s) 587, 1239, 1391, 1420
BseNI ACTGG 5 cut(s) 162, 848, 925, 1091, 1571
BseXI GCAGC 1 cut(s) 1200
BseYI CCCAGC 2 cut(s) 50, 1595
BsgI GTGCAG 2 cut(s) 1050, 1182
Bsh1285I CGRYCG 1 cut(s) 887
BshFI GGCC 6 cut(s) 610, 873, 1075, 1299, 1419, 1486
BshNI GGYRCC 1 cut(s) 709
BsiEI CGRYCG 1 cut(s) 887
BsiSI CCGG 7 cut(s) 98, 173, 414, 602, 611, 645, 887
BslFI GGGAC 1 cut(s) 888
BslI CCNNNNNNNGG 2 cut(s) 78, 1124
BsmAI GTCTC 2 cut(s) 87, 1423
BsmFI GGGAC 1 cut(s) 888
BsmI GAATGC 1 cut(s) 767
BsnI GGCC 6 cut(s) 610, 873, 1075, 1299, 1419, 1486
Bso31I GGTCTC 2 cut(s) 87, 1423
Bsp1286I GDGCHC 1 cut(s) 1168
BspACI CCGC 6 cut(s) 134, 381, 495, 563, 1586, 1631
BspANI GGCC 6 cut(s) 610, 873, 1075, 1299, 1419, 1486
BspCNI CTCAG 4 cut(s) 586, 1238, 1390, 1419
BspLI GGNNCC 6 cut(s) 102, 664, 711, 925, 1089, 1167
BspMAI CTGCAG 1 cut(s) 950
BspMI ACCTGC 1 cut(s) 939
BspPI GGATC 8 cut(s) 95, 101, 108, 657, 670, 959, 983, 991
BspT107I GGYRCC 1 cut(s) 709
BspTI CTTAAG 1 cut(s) 1321
BspTNI GGTCTC 2 cut(s) 87, 1423
BsrFI RCCGGY 1 cut(s) 172
BsrI ACTGG 5 cut(s) 162, 848, 925, 1091, 1571
BssAI RCCGGY 1 cut(s) 172
BssECI CCNNGG 4 cut(s) 76, 96, 713, 1070
BssT1I CCWWGG 1 cut(s) 713
Bst2UI CCWGG 3 cut(s) 77, 707, 1296
Bst4CI ACNGT 6 cut(s) 117, 626, 1051, 1059, 1209, 1460
Bst6I CTCTTC 3 cut(s) 396, 401, 1272
BstAFI CTTAAG 1 cut(s) 1321
BstAPI GCANNNNNTGC 1 cut(s) 1639
BstC8I GCNNGC 5 cut(s) 875, 1193, 1197, 1421, 1488
BstDEI CTNAG 4 cut(s) 573, 1225, 1377, 1406
BstDSI CCRYGG 1 cut(s) 1070
BstF5I GGATG 6 cut(s) 193, 512, 541, 736, 794, 1366
BstMAI GTCTC 2 cut(s) 87, 1423
BstMCI CGRYCG 1 cut(s) 887
BstMWI GCNNNNNNNGC 4 cut(s) 466, 816, 1592, 1639
BstNI CCWGG 3 cut(s) 77, 707, 1296
BstNSI RCATGY 1 cut(s) 1195
BstSCI CCNGG 7 cut(s) 75, 96, 600, 644, 705, 886, 1294
BstSFI CTRYAG 4 cut(s) 840, 946, 969, 975
BstV1I GCAGC 1 cut(s) 1200
BstV2I GAAGAC 1 cut(s) 627
BstX2I RGATCY 3 cut(s) 100, 662, 983
BstYI RGATCY 3 cut(s) 100, 662, 983
BsuRI GGCC 6 cut(s) 610, 873, 1075, 1299, 1419, 1486
BtgI CCRYGG 1 cut(s) 1070
BtrI CACGTC 1 cut(s) 1202
BtsCI GGATG 6 cut(s) 193, 512, 541, 736, 794, 1366
BtsIMutI CAGTG 4 cut(s) 1055, 1056, 1233, 1414
BveI ACCTGC 1 cut(s) 939
Cac8I GCNNGC 5 cut(s) 875, 1193, 1197, 1421, 1488
CaiI CAGNNNCTG 3 cut(s) 214, 355, 1232
Cfr10I RCCGGY 1 cut(s) 172
Cfr13I GGNCC 5 cut(s) 136, 871, 1016, 1484, 1538
CsiI ACCWGGT 1 cut(s) 705
Csp6I GTAC 2 cut(s) 598, 1620
CspCI CAANNNNNGTGG 2 cut(s) 1059, 1094
CviAII CATG 2 cut(s) 131, 1192
CviQI GTAC 2 cut(s) 598, 1620
DdeI CTNAG 4 cut(s) 573, 1225, 1377, 1406
DraI TTTAAA 2 cut(s) 438, 1345
DraIII CACNNNGTG 1 cut(s) 1409
DriI GACNNNNNGTC 2 cut(s) 79, 1507
EaeI YGGCCR 2 cut(s) 1073, 1297
Eam1104I CTCTTC 3 cut(s) 396, 401, 1272
Eam1105I GACNNNNNGTC 2 cut(s) 79, 1507
EarI CTCTTC 3 cut(s) 396, 401, 1272
EciI GGCGGA 3 cut(s) 396, 510, 578
Eco130I CCWWGG 1 cut(s) 713
Eco147I AGGCCT 1 cut(s) 1419
Eco24I GRGCYC 1 cut(s) 1168
Eco31I GGTCTC 2 cut(s) 87, 1423
Eco47I GGWCC 3 cut(s) 136, 1016, 1538
Eco57I CTGAAG 2 cut(s) 33, 639
EcoRII CCWGG 3 cut(s) 75, 705, 1294
EcoT14I CCWWGG 1 cut(s) 713
EcoT22I ATGCAT 1 cut(s) 940
EcoT38I GRGCYC 1 cut(s) 1168
ErhI CCWWGG 1 cut(s) 713
FaeI CATG 2 cut(s) 134, 1195
FalI AAGNNNNNCTT 2 cut(s) 758, 790
FaqI GGGAC 1 cut(s) 888
FatI CATG 2 cut(s) 130, 1191
FauI CCCGC 1 cut(s) 1579
FbaI TGATCA 1 cut(s) 1543
FblI GTMKAC 1 cut(s) 1245
Fnu4HI GCNGC 3 cut(s) 1189, 1631, 1634
FokI GGATG 6 cut(s) 200, 519, 548, 743, 801, 1353
FriOI GRGCYC 1 cut(s) 1168
Fsp4HI GCNGC 3 cut(s) 1189, 1631, 1634
FspBI CTAG 3 cut(s) 125, 714, 999
GluI GCNGC 3 cut(s) 1189, 1631, 1634
GsaI CCCAGC 2 cut(s) 54, 1599
GsuI CTGGAG 4 cut(s) 831, 1074, 1152, 1247
HaeIII GGCC 6 cut(s) 610, 873, 1075, 1299, 1419, 1486
HapII CCGG 7 cut(s) 98, 173, 414, 602, 611, 645, 887
Hin1II CATG 2 cut(s) 134, 1195
HinfI GANTC 5 cut(s) 218, 734, 745, 1111, 1267
HpaII CCGG 7 cut(s) 98, 173, 414, 602, 611, 645, 887
Hpy166II GTNNAC 3 cut(s) 1096, 1205, 1246
Hpy188I TCNGA 8 cut(s) 13, 73, 121, 480, 988, 1147, 1380, 1440
Hpy188III TCNNGA 8 cut(s) 41, 104, 125, 575, 854, 999, 1264, 1541
Hpy8I GTNNAC 3 cut(s) 1096, 1205, 1246
Hpy99I CGWCG 2 cut(s) 146, 488
HpyAV CCTTC 9 cut(s) 99, 223, 268, 301, 313, 497, 553, 582, 846
HpyCH4III ACNGT 6 cut(s) 117, 626, 1051, 1059, 1209, 1460
HpyCH4IV ACGT 2 cut(s) 1201, 1242
HpyF10VI GCNNNNNNNGC 4 cut(s) 466, 816, 1592, 1639
HpyF3I CTNAG 4 cut(s) 573, 1225, 1377, 1406
HpySE526I ACGT 2 cut(s) 1201, 1242
Hsp92II CATG 2 cut(s) 134, 1195
Ksp22I TGATCA 1 cut(s) 1543
LmnI GCTCC 7 cut(s) 211, 335, 850, 929, 1093, 1171, 1599
Lsp1109I GCAGC 1 cut(s) 1200
LweI GCATC 4 cut(s) 779, 947, 1031, 1046
MabI ACCWGGT 1 cut(s) 705
MaeI CTAG 3 cut(s) 125, 714, 999
MaeII ACGT 2 cut(s) 1201, 1242
MaeIII GTNAC 6 cut(s) 581, 1026, 1228, 1409, 1509, 1562
MboII GAAGA 9 cut(s) 407, 410, 413, 418, 568, 632, 1125, 1289, 1515
MfeI CAATTG 1 cut(s) 667
MflI RGATCY 3 cut(s) 100, 662, 983
MhlI GDGCHC 1 cut(s) 1168
MlsI TGGCCA 1 cut(s) 1299
MluCI AATT 6 cut(s) 667, 879, 1141, 1351, 1478, 1496
MluNI TGGCCA 1 cut(s) 1299
MlyI GAGTC 1 cut(s) 743
MmeI TCCRAC 1 cut(s) 96
Mox20I TGGCCA 1 cut(s) 1299
Mph1103I ATGCAT 1 cut(s) 940
MscI TGGCCA 1 cut(s) 1299
MseI TTAA 6 cut(s) 437, 678, 861, 954, 1322, 1344
MslI CAYNNNNRTG 1 cut(s) 1103
Msp20I TGGCCA 1 cut(s) 1299
MspCI CTTAAG 1 cut(s) 1321
MspI CCGG 7 cut(s) 98, 173, 414, 602, 611, 645, 887
MspR9I CCNGG 7 cut(s) 77, 98, 602, 646, 707, 888, 1296
MunI CAATTG 1 cut(s) 667
Mva1269I GAATGC 1 cut(s) 767
MvaI CCWGG 3 cut(s) 77, 707, 1296
MwoI GCNNNNNNNGC 4 cut(s) 466, 816, 1592, 1639
NciI CCSGG 4 cut(s) 98, 602, 646, 888
NlaIII CATG 2 cut(s) 134, 1195
NlaIV GGNNCC 6 cut(s) 102, 664, 711, 925, 1089, 1167
NmuCI GTSAC 4 cut(s) 1228, 1409, 1509, 1562
NsiI ATGCAT 1 cut(s) 940
NspI RCATGY 1 cut(s) 1195
PaeI GCATGC 1 cut(s) 1195
PceI AGGCCT 1 cut(s) 1419
PcsI WCGNNNNNNNCGW 1 cut(s) 69
PctI GAATGC 1 cut(s) 767
PfeI GAWTC 4 cut(s) 218, 745, 1111, 1267
PflFI GACNNNGTC 1 cut(s) 646
PkrI GCNGC 3 cut(s) 1190, 1632, 1635
PleI GAGTC 1 cut(s) 742
PpsI GAGTC 1 cut(s) 742
Psp6I CCWGG 3 cut(s) 75, 705, 1294
PspFI CCCAGC 2 cut(s) 50, 1595
PspGI CCWGG 3 cut(s) 75, 705, 1294
PspN4I GGNNCC 6 cut(s) 102, 664, 711, 925, 1089, 1167
PspPI GGNCC 5 cut(s) 136, 871, 1016, 1484, 1538
PsrI GAACNNNNNNTAC 4 cut(s) 834, 866, 1603, 1635
PstI CTGCAG 1 cut(s) 950
PstNI CAGNNNCTG 3 cut(s) 214, 355, 1232
PsuI RGATCY 3 cut(s) 100, 662, 983
PsyI GACNNNGTC 1 cut(s) 646
RsaI GTAC 2 cut(s) 599, 1621
RsaNI GTAC 2 cut(s) 598, 1620
RseI CAYNNNNRTG 1 cut(s) 1103
SaqAI TTAA 6 cut(s) 437, 678, 861, 954, 1322, 1344
SatI GCNGC 3 cut(s) 1189, 1631, 1634
Sau96I GGNCC 5 cut(s) 136, 871, 1016, 1484, 1538
SchI GAGTC 1 cut(s) 743
ScrFI CCNGG 7 cut(s) 77, 98, 602, 646, 707, 888, 1296
SduI GDGCHC 1 cut(s) 1168
SexAI ACCWGGT 1 cut(s) 705
SfaNI GCATC 4 cut(s) 779, 947, 1031, 1046
SfcI CTRYAG 4 cut(s) 840, 946, 969, 975
SinI GGWCC 3 cut(s) 136, 1016, 1538
SmiMI CAYNNNNRTG 1 cut(s) 1103
SmlI CTYRAG 4 cut(s) 775, 854, 1122, 1321
SmoI CTYRAG 4 cut(s) 775, 854, 1122, 1321
SphI GCATGC 1 cut(s) 1195
Sse9I AATT 6 cut(s) 667, 879, 1141, 1351, 1478, 1496
SseBI AGGCCT 1 cut(s) 1419
SsiI CCGC 6 cut(s) 134, 381, 495, 563, 1586, 1631
SspMI CTAG 3 cut(s) 125, 714, 999
StuI AGGCCT 1 cut(s) 1419
StyD4I CCNGG 7 cut(s) 75, 96, 600, 644, 705, 886, 1294
StyI CCWWGG 1 cut(s) 713
TaaI ACNGT 6 cut(s) 117, 626, 1051, 1059, 1209, 1460
TaiI ACGT 2 cut(s) 1204, 1245
TaqI TCGA 3 cut(s) 141, 221, 883
TasI AATT 6 cut(s) 667, 879, 1141, 1351, 1478, 1496
TauI GCSGC 1 cut(s) 1633
TfiI GAWTC 4 cut(s) 218, 745, 1111, 1267
Tru1I TTAA 6 cut(s) 437, 678, 861, 954, 1322, 1344
Tru9I TTAA 6 cut(s) 437, 678, 861, 954, 1322, 1344
TscAI CASTG 4 cut(s) 1056, 1062, 1233, 1414
TseFI GTSAC 4 cut(s) 1228, 1409, 1509, 1562
TseI GCWGC 2 cut(s) 1188, 1633
Tsp45I GTSAC 4 cut(s) 1228, 1409, 1509, 1562
TspDTI ATGAA 2 cut(s) 140, 1232
TspGWI ACGGA 5 cut(s) 258, 303, 348, 501, 773
TspRI CASTG 4 cut(s) 1056, 1062, 1233, 1414
Tth111I GACNNNGTC 1 cut(s) 646
Vha464I CTTAAG 1 cut(s) 1321
VpaK11BI GGWCC 3 cut(s) 136, 1016, 1538
XapI RAATTY 3 cut(s) 1141, 1478, 1496
XbaI TCTAGA 2 cut(s) 124, 998
XceI RCATGY 1 cut(s) 1195
XmaJI CCTAGG 1 cut(s) 713
XmiI GTMKAC 1 cut(s) 1245
XspI CTAG 3 cut(s) 125, 714, 999
Zsp2I ATGCAT 1 cut(s) 940
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.