pycom02g00910

zinc finger CCCH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0000602
Physical Location & Seq
Reverse (-)
537043 .. 537336
294 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g00910.1

Sequence Viewer

Length: 294 bp
ATGCCTGCACCTTCACCTCTACCATATGTTATGAACAACTCGATGACCGAAACCAACTACTACGGACAATATGCACAGCAGACGCAAGCTGAAGAATTACCAGAACGACCTGGCCAACCTGTTTGCTTCTATTTCGCTCAAACAGGGGATTGTGTTAATAAATCTAATTGCCAATATCACCATCCAAAAAATCAGACTGCAGCGACCCCCTCATGTGCACTTAGTGACAGGGGCCTCCCTTTAAGACCAGTAAGTTCACTCTTCTTCGAAGTTCTTTTTATGCAGAATTCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-CCCH zf-CCCH_2

Protein Analysis

98

Amino Acids

10.88

Weight (kDa)

5.48

Isoelectric Point (pI)

58.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000602)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G48195 AT3G48440 AT5G63260 AT5G63260
fragaria_vesca FvH4_5g07100 FvH4_5g07100 FvH4_5g07100 FvH4_5g07100 FvH4_5g07100 FvH4_5g07100 FvH4_5g07100
malus_domestica MD06G1158800.v1.1 MD06G1159000.v1.1 MD06G1159200.v1.1 MD14G1165100.v1.1 MD14G1165300.v1.1 MD14G1165400.v1.1 MD14G1165500.v1.1
prunus_persica Prupe.5G158300_v2.0.a1 Prupe.5G158300_v2.0.a1 Prupe.5G158400_v2.0.a1 Prupe.5G158400_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158600_v2.0.a1 Prupe.5G158700_v2.0.a1 Prupe.5G158800_v2.0.a1 Prupe.5G158900_v2.0.a1 Prupe.5G159000_v2.0.a1 Prupe.5G159100_v2.0.a1 Prupe.5G159100_v2.0.a1
pyrus_communis pycom02g00910 pycom06g14200 pycom14g13760 pycom14g13790 pycom14g13800
rosa_chinensis RchiOBHm_Chr5g0019351 RchiOBHm_Chr5g0022771 RchiOBHm_Chr7g0191441 RchiOBHm_Chr7g0191531
rosa_laevigata RLG00000004449 RLG00000032440
rosa_multiflora Rmu_sc0001809.1_g000062 Rmu_sc0005292.1_g000027
rosa_roxburghii Rroxscaffold_1G00074260 Rroxscaffold_6G00390280 Rroxscaffold_7G00168660
rosa_rugosa Rorug05G0049600 Rorug05G0049700 Rorug05G0049800 Rorug06G0510400
rosa_samantha Rh5CG151400 Rh5DG140300 Rh7AG118400 Rh7BG120400 Rh7CG123200 Rh7DG121300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 112
AcsI RAATTY 1 cut(s) 286
AcuI CTGAAG 1 cut(s) 111
AdeI CACNNNGTG 1 cut(s) 224
AjnI CCWGG 1 cut(s) 109
AluBI AGCT 1 cut(s) 89
AluI AGCT 1 cut(s) 89
Alw21I GWGCWC 1 cut(s) 220
Alw44I GTGCAC 1 cut(s) 216
AoxI GGCC 2 cut(s) 112, 232
ApaLI GTGCAC 1 cut(s) 216
ApeKI GCWGC 1 cut(s) 200
ApoI RAATTY 1 cut(s) 286
AspS9I GGNCC 1 cut(s) 232
AsuHPI GGTGA 2 cut(s) 6, 170
AsuII TTCGAA 1 cut(s) 267
BaeGI GKGCMC 1 cut(s) 220
BalI TGGCCA 1 cut(s) 114
Bbv12I GWGCWC 1 cut(s) 220
BbvI GCAGC 1 cut(s) 212
BccI CCATC 1 cut(s) 189
BciT130I CCWGG 1 cut(s) 111
BfmI CTRYAG 1 cut(s) 198
BisI GCNGC 1 cut(s) 201
BlsI GCNGC 1 cut(s) 202
Bme1390I CCNGG 1 cut(s) 111
BmgT120I GGNCC 1 cut(s) 232
BmiI GGNNCC 1 cut(s) 233
BmrFI CCNGG 1 cut(s) 111
Bpu14I TTCGAA 1 cut(s) 267
Bse1I ACTGG 1 cut(s) 248
BseBI CCWGG 1 cut(s) 111
BseGI GGATG 1 cut(s) 181
BseNI ACTGG 1 cut(s) 248
BseSI GKGCMC 1 cut(s) 220
BseXI GCAGC 1 cut(s) 212
BshFI GGCC 2 cut(s) 114, 234
BsiHKAI GWGCWC 1 cut(s) 220
BsnI GGCC 2 cut(s) 114, 234
Bsp119I TTCGAA 1 cut(s) 267
Bsp1286I GDGCHC 1 cut(s) 220
BspANI GGCC 2 cut(s) 114, 234
BspLI GGNNCC 1 cut(s) 233
BspMAI CTGCAG 1 cut(s) 202
BspT104I TTCGAA 1 cut(s) 267
BsrI ACTGG 1 cut(s) 248
Bst2UI CCWGG 1 cut(s) 111
Bst6I CTCTTC 1 cut(s) 266
BstBI TTCGAA 1 cut(s) 267
BstC8I GCNNGC 2 cut(s) 6, 87
BstDEI CTNAG 1 cut(s) 221
BstF5I GGATG 1 cut(s) 181
BstNI CCWGG 1 cut(s) 111
BstSCI CCNGG 1 cut(s) 109
BstSFI CTRYAG 1 cut(s) 198
BstSLI GKGCMC 1 cut(s) 220
BstV1I GCAGC 1 cut(s) 212
BsuRI GGCC 2 cut(s) 114, 234
BtsCI GGATG 1 cut(s) 181
Cac8I GCNNGC 2 cut(s) 6, 87
Cfr13I GGNCC 1 cut(s) 232
CseI GACGC 1 cut(s) 91
CviAII CATG 1 cut(s) 213
CviJI RGCY 3 cut(s) 89, 114, 234
CviKI_1 RGCY 3 cut(s) 89, 114, 234
DdeI CTNAG 1 cut(s) 221
DraIII CACNNNGTG 1 cut(s) 224
EaeI YGGCCR 1 cut(s) 112
Eam1104I CTCTTC 1 cut(s) 266
EarI CTCTTC 1 cut(s) 266
Eco57I CTGAAG 1 cut(s) 111
EcoO109I RGGNCCY 1 cut(s) 232
EcoRI GAATTC 1 cut(s) 286
EcoRII CCWGG 1 cut(s) 109
FaeI CATG 1 cut(s) 216
FaiI YATR 6 cut(s) 25, 27, 32, 72, 214, 281
FatI CATG 1 cut(s) 212
FauNDI CATATG 1 cut(s) 25
Fnu4HI GCNGC 1 cut(s) 201
FokI GGATG 1 cut(s) 168
Fsp4HI GCNGC 1 cut(s) 201
GluI GCNGC 1 cut(s) 201
HaeIII GGCC 2 cut(s) 114, 234
HgaI GACGC 1 cut(s) 91
Hin1II CATG 1 cut(s) 216
HphI GGTGA 2 cut(s) 6, 170
Hpy166II GTNNAC 2 cut(s) 218, 257
Hpy188I TCNGA 1 cut(s) 195
Hpy8I GTNNAC 2 cut(s) 218, 257
HpyAV CCTTC 1 cut(s) 21
HpyCH4V TGCA 5 cut(s) 8, 74, 200, 218, 283
HpyF3I CTNAG 1 cut(s) 221
Hsp92II CATG 1 cut(s) 216
LpnPI CCDG 8 cut(s) 18, 96, 114, 123, 129, 132, 214, 261
Lsp1109I GCAGC 1 cut(s) 212
MaeIII GTNAC 1 cut(s) 224
MboII GAAGA 3 cut(s) 104, 253, 256
MhlI GDGCHC 1 cut(s) 220
MlsI TGGCCA 1 cut(s) 114
MluCI AATT 3 cut(s) 95, 166, 286
MluNI TGGCCA 1 cut(s) 114
MnlI CCTC 3 cut(s) 27, 220, 245
Mox20I TGGCCA 1 cut(s) 114
MscI TGGCCA 1 cut(s) 114
MseI TTAA 2 cut(s) 156, 242
Msp20I TGGCCA 1 cut(s) 114
MspR9I CCNGG 1 cut(s) 111
MvaI CCWGG 1 cut(s) 111
NdeI CATATG 1 cut(s) 25
NlaIII CATG 1 cut(s) 216
NlaIV GGNNCC 1 cut(s) 233
NmuCI GTSAC 1 cut(s) 224
NspV TTCGAA 1 cut(s) 267
PkrI GCNGC 1 cut(s) 202
Psp6I CCWGG 1 cut(s) 109
PspGI CCWGG 1 cut(s) 109
PspN4I GGNNCC 1 cut(s) 233
PspPI GGNCC 1 cut(s) 232
PstI CTGCAG 1 cut(s) 202
SaqAI TTAA 2 cut(s) 156, 242
SatI GCNGC 1 cut(s) 201
Sau96I GGNCC 1 cut(s) 232
ScrFI CCNGG 1 cut(s) 111
SduI GDGCHC 1 cut(s) 220
SetI ASST 5 cut(s) 13, 19, 91, 112, 121
SfcI CTRYAG 1 cut(s) 198
SfuI TTCGAA 1 cut(s) 267
Sse9I AATT 3 cut(s) 95, 166, 286
StyD4I CCNGG 1 cut(s) 109
TaqI TCGA 2 cut(s) 41, 267
TaqII GACCGA 1 cut(s) 62
TasI AATT 3 cut(s) 95, 166, 286
Tru1I TTAA 2 cut(s) 156, 242
Tru9I TTAA 2 cut(s) 156, 242
TseFI GTSAC 1 cut(s) 224
TseI GCWGC 1 cut(s) 200
Tsp45I GTSAC 1 cut(s) 224
TspDTI ATGAA 1 cut(s) 47
TspGWI ACGGA 1 cut(s) 78
VneI GTGCAC 1 cut(s) 216
XapI RAATTY 1 cut(s) 286
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.