Rorug05G0049700

zinc finger CCCH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000602
Physical Location & Seq
Forward (+)
4359264 .. 4361123
1860 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0049700.1

Sequence Viewer

Length: 255 bp
ATGTTTTTGATCCACATTGGCTTCTGCATCTTTGCTGCGGGTGCTCCCCCTATAATGTTCAAAGGAAAATCTCTCATTGGCATTCTGGCTGCAATTGATATTCGAAGTGATCATGCTTTGGTTAGGTTGTTCTACTGTATCGGATTCGGCATGTTCTGTCTTGAATCAGTGCTTAGCATCTGGATTATTCAGCAAGTATACATGTACGTCCCGGGAAGTGGTAAAGCTGCTCAAATGAAGCGTAAGGGAGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-CCCH zf-CCCH_2

Protein Analysis

84

Amino Acids

9.24

Weight (kDa)

9.45

Isoelectric Point (pI)

43.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SCAMP PF04144 1 - 70 1.2e-10 SCAMP family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000602)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G48195 AT3G48440 AT5G63260 AT5G63260
fragaria_vesca FvH4_5g07100 FvH4_5g07100 FvH4_5g07100 FvH4_5g07100 FvH4_5g07100 FvH4_5g07100 FvH4_5g07100
malus_domestica MD06G1158800.v1.1 MD06G1159000.v1.1 MD06G1159200.v1.1 MD14G1165100.v1.1 MD14G1165300.v1.1 MD14G1165400.v1.1 MD14G1165500.v1.1
prunus_persica Prupe.5G158300_v2.0.a1 Prupe.5G158300_v2.0.a1 Prupe.5G158400_v2.0.a1 Prupe.5G158400_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158600_v2.0.a1 Prupe.5G158700_v2.0.a1 Prupe.5G158800_v2.0.a1 Prupe.5G158900_v2.0.a1 Prupe.5G159000_v2.0.a1 Prupe.5G159100_v2.0.a1 Prupe.5G159100_v2.0.a1
pyrus_communis pycom02g00910 pycom06g14200 pycom14g13760 pycom14g13790 pycom14g13800
rosa_chinensis RchiOBHm_Chr5g0019351 RchiOBHm_Chr5g0022771 RchiOBHm_Chr7g0191441 RchiOBHm_Chr7g0191531
rosa_laevigata RLG00000004449 RLG00000032440
rosa_multiflora Rmu_sc0001809.1_g000062 Rmu_sc0005292.1_g000027
rosa_roxburghii Rroxscaffold_1G00074260 Rroxscaffold_6G00390280 Rroxscaffold_7G00168660
rosa_rugosa Rorug05G0049600 Rorug05G0049700 Rorug05G0049800 Rorug06G0510400
rosa_samantha Rh5CG151400 Rh5DG140300 Rh7AG118400 Rh7BG120400 Rh7CG123200 Rh7DG121300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 198
AciI CCGC 1 cut(s) 38
AclWI GGATC 1 cut(s) 4
AfaI GTAC 1 cut(s) 206
AfiI CCNNNNNNNGG 1 cut(s) 218
AflIII ACRYGT 1 cut(s) 201
AgsI TTSAA 2 cut(s) 61, 164
AluBI AGCT 1 cut(s) 227
AluI AGCT 1 cut(s) 227
Alw21I GWGCWC 1 cut(s) 46
AlwI GGATC 1 cut(s) 4
Ama87I CYCGRG 1 cut(s) 211
ApeKI GCWGC 3 cut(s) 35, 89, 227
AsuC2I CCSGG 2 cut(s) 212, 213
AsuII TTCGAA 1 cut(s) 103
AvaI CYCGRG 1 cut(s) 211
Bbv12I GWGCWC 1 cut(s) 46
BbvI GCAGC 3 cut(s) 22, 76, 214
BclI TGATCA 1 cut(s) 109
BcnI CCSGG 2 cut(s) 212, 213
BisI GCNGC 3 cut(s) 36, 90, 228
BlpI GCTNAGC 1 cut(s) 173
BlsI GCNGC 3 cut(s) 37, 91, 229
Bme1390I CCNGG 2 cut(s) 212, 213
BmeT110I CYCGRG 1 cut(s) 211
BmrFI CCNGG 2 cut(s) 212, 213
BmsI GCATC 2 cut(s) 36, 186
Bpu1102I GCTNAGC 1 cut(s) 173
Bpu14I TTCGAA 1 cut(s) 103
BpuMI CCSGG 2 cut(s) 212, 213
BsaJI CCNNGG 1 cut(s) 211
Bsc4I CCNNNNNNNGG 1 cut(s) 218
BseDI CCNNGG 1 cut(s) 211
BseLI CCNNNNNNNGG 1 cut(s) 218
BseXI GCAGC 3 cut(s) 22, 76, 214
BsiHKAI GWGCWC 1 cut(s) 46
BsiHKCI CYCGRG 1 cut(s) 211
BsiSI CCGG 1 cut(s) 212
BslFI GGGAC 1 cut(s) 194
BslI CCNNNNNNNGG 1 cut(s) 218
BsmFI GGGAC 1 cut(s) 194
BsmI GAATGC 1 cut(s) 81
BsoBI CYCGRG 1 cut(s) 211
Bsp119I TTCGAA 1 cut(s) 103
Bsp1286I GDGCHC 1 cut(s) 46
Bsp143I GATC 2 cut(s) 9, 109
Bsp1720I GCTNAGC 1 cut(s) 173
BspACI CCGC 1 cut(s) 38
BspPI GGATC 1 cut(s) 4
BspT104I TTCGAA 1 cut(s) 103
BssECI CCNNGG 1 cut(s) 211
BssMI GATC 2 cut(s) 9, 109
BssNAI GTATAC 1 cut(s) 199
Bst1107I GTATAC 1 cut(s) 199
Bst4CI ACNGT 1 cut(s) 137
BstBI TTCGAA 1 cut(s) 103
BstDEI CTNAG 1 cut(s) 173
BstKTI GATC 2 cut(s) 12, 112
BstMBI GATC 2 cut(s) 9, 109
BstMWI GCNNNNNNNGC 1 cut(s) 41
BstNSI RCATGY 2 cut(s) 154, 205
BstSCI CCNGG 2 cut(s) 210, 211
BstV1I GCAGC 3 cut(s) 22, 76, 214
BstZ17I GTATAC 1 cut(s) 199
BtsIMutI CAGTG 1 cut(s) 174
Cfr9I CCCGGG 1 cut(s) 211
Csp6I GTAC 1 cut(s) 205
CviAII CATG 4 cut(s) 113, 151, 202, 252
CviJI RGCY 3 cut(s) 21, 89, 227
CviKI_1 RGCY 3 cut(s) 21, 89, 227
CviQI GTAC 1 cut(s) 205
DdeI CTNAG 1 cut(s) 173
DpnI GATC 2 cut(s) 11, 111
DpnII GATC 2 cut(s) 9, 109
Eco88I CYCGRG 1 cut(s) 211
FaeI CATG 4 cut(s) 116, 154, 205, 255
FaiI YATR 6 cut(s) 53, 114, 152, 199, 203, 253
FaqI GGGAC 1 cut(s) 194
FatI CATG 4 cut(s) 112, 150, 201, 251
FauI CCCGC 1 cut(s) 31
FbaI TGATCA 1 cut(s) 109
FblI GTMKAC 1 cut(s) 198
Fnu4HI GCNGC 3 cut(s) 36, 90, 228
Fsp4HI GCNGC 3 cut(s) 36, 90, 228
GluI GCNGC 3 cut(s) 36, 90, 228
HapII CCGG 1 cut(s) 212
Hin1II CATG 4 cut(s) 116, 154, 205, 255
HinfI GANTC 2 cut(s) 144, 164
HpaII CCGG 1 cut(s) 212
Hpy166II GTNNAC 1 cut(s) 199
Hpy188I TCNGA 1 cut(s) 143
Hpy188III TCNNGA 2 cut(s) 161, 181
Hpy8I GTNNAC 1 cut(s) 199
HpyCH4III ACNGT 1 cut(s) 137
HpyCH4IV ACGT 1 cut(s) 207
HpyCH4V TGCA 2 cut(s) 27, 92
HpyF10VI GCNNNNNNNGC 1 cut(s) 41
HpyF3I CTNAG 1 cut(s) 173
HpySE526I ACGT 1 cut(s) 207
Hsp92II CATG 4 cut(s) 116, 154, 205, 255
Ksp22I TGATCA 1 cut(s) 109
Kzo9I GATC 2 cut(s) 9, 109
LmnI GCTCC 2 cut(s) 49, 248
LpnPI CCDG 3 cut(s) 71, 166, 225
Lsp1109I GCAGC 3 cut(s) 22, 76, 214
LweI GCATC 2 cut(s) 36, 186
MaeII ACGT 1 cut(s) 207
MalI GATC 2 cut(s) 11, 111
MboI GATC 2 cut(s) 9, 109
MfeI CAATTG 1 cut(s) 93
MhlI GDGCHC 1 cut(s) 46
MluCI AATT 1 cut(s) 93
MspI CCGG 1 cut(s) 212
MspR9I CCNGG 2 cut(s) 212, 213
MunI CAATTG 1 cut(s) 93
Mva1269I GAATGC 1 cut(s) 81
MwoI GCNNNNNNNGC 1 cut(s) 41
NciI CCSGG 2 cut(s) 212, 213
NdeII GATC 2 cut(s) 9, 109
NlaIII CATG 4 cut(s) 116, 154, 205, 255
NspI RCATGY 2 cut(s) 154, 205
NspV TTCGAA 1 cut(s) 103
PciI ACATGT 1 cut(s) 201
PctI GAATGC 1 cut(s) 81
PfeI GAWTC 2 cut(s) 144, 164
PkrI GCNGC 3 cut(s) 37, 91, 229
PscI ACATGT 1 cut(s) 201
RsaI GTAC 1 cut(s) 206
RsaNI GTAC 1 cut(s) 205
SatI GCNGC 3 cut(s) 36, 90, 228
Sau3AI GATC 2 cut(s) 9, 109
ScrFI CCNGG 2 cut(s) 212, 213
SduI GDGCHC 1 cut(s) 46
SetI ASST 3 cut(s) 128, 210, 229
SfaNI GCATC 2 cut(s) 36, 186
SfuI TTCGAA 1 cut(s) 103
SmaI CCCGGG 1 cut(s) 213
Sse9I AATT 1 cut(s) 93
SsiI CCGC 1 cut(s) 38
StyD4I CCNGG 2 cut(s) 210, 211
TaaI ACNGT 1 cut(s) 137
TaiI ACGT 1 cut(s) 210
TaqI TCGA 1 cut(s) 103
TasI AATT 1 cut(s) 93
TfiI GAWTC 2 cut(s) 144, 164
TscAI CASTG 1 cut(s) 174
TseI GCWGC 3 cut(s) 35, 89, 227
TspDTI ATGAA 1 cut(s) 251
TspMI CCCGGG 1 cut(s) 211
TspRI CASTG 1 cut(s) 174
XceI RCATGY 2 cut(s) 154, 205
XmaI CCCGGG 1 cut(s) 211
XmiI GTMKAC 1 cut(s) 198
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.