Rmu_sc0001809.1_g000062

zinc finger CCCH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001809.1
OG0000602
Physical Location & Seq
Reverse (-)
317992 .. 318753
762 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001809.1_g000062.1.cds

Sequence Viewer

Length: 762 bp
atgcgaaatggctcctgcaagtatggatcaaactgcaggtttaatcaccctgatcctactgctgcaggaggatctgaccctccatctggatttgataatggtggacctgcatcattacaaggtggatcgcaatcatcatcttggtctgcaccaagatcattgaatgagactccgctttatatgccaatgatgatgccaccatctcaaggggttccttctcaaaatacagaatggaatggctatcaggcaccagtttatctagaaagaagcatgcctgcacgtccaccatatgttatcaacaactcagggaccaaaaccaatgtttataaacaatatccaccgtcaaatcaagttgacgaatttccagaacgacctggacaacgtttgtgcagtttctttttaagaacaggggactgtaagtttaaatctaattgcaaatatcatcatccaaaaagtcagactgcagtatccccctcatttgcaccgagtgacaagggcctgcctttgagaccacttaattttctctctaagcttggaagggccggtaggtacgtacgaatggaggaaccaatcggagaatactgctgccccgtgcaaatcatcgactctgacggtgatttcaagaatgctgggcttgaccgtttcattgagcaagcgaagcttggtgaatgcggggcctcatatgttatcacctccatcataggcgctcagagtagcgggaagagcacagtttcggcaccggattcactgagatggacataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-CCCH zf-CCCH_2

Protein Analysis

253

Amino Acids

27.59

Weight (kDa)

8.74

Isoelectric Point (pI)

56.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000602)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G48195 AT3G48440 AT5G63260 AT5G63260
fragaria_vesca FvH4_5g07100 FvH4_5g07100 FvH4_5g07100 FvH4_5g07100 FvH4_5g07100 FvH4_5g07100 FvH4_5g07100
malus_domestica MD06G1158800.v1.1 MD06G1159000.v1.1 MD06G1159200.v1.1 MD14G1165100.v1.1 MD14G1165300.v1.1 MD14G1165400.v1.1 MD14G1165500.v1.1
prunus_persica Prupe.5G158300_v2.0.a1 Prupe.5G158300_v2.0.a1 Prupe.5G158400_v2.0.a1 Prupe.5G158400_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158600_v2.0.a1 Prupe.5G158700_v2.0.a1 Prupe.5G158800_v2.0.a1 Prupe.5G158900_v2.0.a1 Prupe.5G159000_v2.0.a1 Prupe.5G159100_v2.0.a1 Prupe.5G159100_v2.0.a1
pyrus_communis pycom02g00910 pycom06g14200 pycom14g13760 pycom14g13790 pycom14g13800
rosa_chinensis RchiOBHm_Chr5g0019351 RchiOBHm_Chr5g0022771 RchiOBHm_Chr7g0191441 RchiOBHm_Chr7g0191531
rosa_laevigata RLG00000004449 RLG00000032440
rosa_multiflora Rmu_sc0001809.1_g000062 Rmu_sc0005292.1_g000027
rosa_roxburghii Rroxscaffold_1G00074260 Rroxscaffold_6G00390280 Rroxscaffold_7G00168660
rosa_rugosa Rorug05G0049600 Rorug05G0049700 Rorug05G0049800 Rorug06G0510400
rosa_samantha Rh5CG151400 Rh5DG140300 Rh7AG118400 Rh7BG120400 Rh7CG123200 Rh7DG121300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 327
Acc36I ACCTGC 2 cut(s) 27, 115
AccB1I GGYRCC 2 cut(s) 247, 736
AciI CCGC 3 cut(s) 173, 672, 717
AclI AACGTT 1 cut(s) 382
AclWI GGATC 4 cut(s) 34, 47, 79, 133
AcsI RAATTY 1 cut(s) 359
AdeI CACNNNGTG 1 cut(s) 488
AfaI GTAC 2 cut(s) 551, 555
AfiI CCNNNNNNNGG 2 cut(s) 86, 206
AgsI TTSAA 2 cut(s) 163, 622
AjiI CACGTC 1 cut(s) 281
AjnI CCWGG 1 cut(s) 373
AluBI AGCT 2 cut(s) 532, 661
AluI AGCT 2 cut(s) 532, 661
Alw21I GWGCWC 1 cut(s) 728
Alw26I GTCTC 2 cut(s) 161, 502
AlwI GGATC 4 cut(s) 34, 47, 79, 133
AoxI GGCC 3 cut(s) 496, 540, 675
ApeKI GCWGC 2 cut(s) 62, 585
ApoI RAATTY 1 cut(s) 359
AspLEI GCGC 1 cut(s) 707
AspS9I GGNCC 5 cut(s) 104, 309, 496, 540, 675
AsuHPI GGTGA 4 cut(s) 38, 626, 677, 682
AvaII GGWCC 2 cut(s) 104, 309
BaeI ACNNNNGTAYC 2 cut(s) 450, 483
BanI GGYRCC 2 cut(s) 247, 736
Bbv12I GWGCWC 1 cut(s) 728
BbvI GCAGC 2 cut(s) 49, 572
BccI CCATC 4 cut(s) 91, 208, 704, 747
BciT130I CCWGG 1 cut(s) 375
BciVI GTATCC 1 cut(s) 478
BcoDI GTCTC 2 cut(s) 161, 502
BfaI CTAG 1 cut(s) 260
BfmI CTRYAG 3 cut(s) 34, 63, 462
BfoI RGCGCY 1 cut(s) 708
BfuAI ACCTGC 2 cut(s) 27, 115
BfuI GTATCC 1 cut(s) 478
BisI GCNGC 2 cut(s) 63, 586
BlsI GCNGC 2 cut(s) 64, 587
Bme1390I CCNGG 1 cut(s) 375
Bme18I GGWCC 2 cut(s) 104, 309
BmgBI CACGTC 1 cut(s) 281
BmgT120I GGNCC 5 cut(s) 104, 309, 496, 540, 675
BmiI GGNNCC 7 cut(s) 13, 213, 249, 310, 567, 676, 738
BmrFI CCNGG 1 cut(s) 375
BmsI GCATC 2 cut(s) 119, 183
BpuEI CTTGAG 1 cut(s) 189
BsaAI YACGTR 1 cut(s) 553
BsaBI GATNNNNATC 1 cut(s) 130
BsaI GGTCTC 1 cut(s) 502
BsaWI WCCGGW 1 cut(s) 739
Bsc4I CCNNNNNNNGG 2 cut(s) 86, 206
Bse118I RCCGGY 1 cut(s) 542
Bse1I ACTGG 1 cut(s) 251
Bse8I GATNNNNATC 1 cut(s) 130
BseBI CCWGG 1 cut(s) 375
BseGI GGATG 1 cut(s) 445
BseJI GATNNNNATC 1 cut(s) 130
BseLI CCNNNNNNNGG 2 cut(s) 86, 206
BseMII CTCAG 3 cut(s) 318, 722, 740
BseNI ACTGG 1 cut(s) 251
BseXI GCAGC 2 cut(s) 49, 572
BseYI CCCAGC 1 cut(s) 629
BsgI GTGCAG 3 cut(s) 132, 261, 409
BshFI GGCC 3 cut(s) 498, 542, 677
BshNI GGYRCC 2 cut(s) 247, 736
BsiHKAI GWGCWC 1 cut(s) 728
BsiSI CCGG 2 cut(s) 543, 740
BsiWI CGTACG 1 cut(s) 553
BslFI GGGAC 2 cut(s) 322, 425
BslI CCNNNNNNNGG 2 cut(s) 86, 206
BsmAI GTCTC 2 cut(s) 161, 502
BsmFI GGGAC 2 cut(s) 322, 425
BsmI GAATGC 2 cut(s) 631, 674
BsnI GGCC 3 cut(s) 498, 542, 677
Bso31I GGTCTC 1 cut(s) 502
Bsp1286I GDGCHC 1 cut(s) 728
Bsp143I GATC 5 cut(s) 26, 52, 71, 125, 155
BspACI CCGC 3 cut(s) 173, 672, 717
BspANI GGCC 3 cut(s) 498, 542, 677
BspCNI CTCAG 3 cut(s) 317, 721, 741
BspLI GGNNCC 7 cut(s) 13, 213, 249, 310, 567, 676, 738
BspMAI CTGCAG 3 cut(s) 38, 67, 466
BspMI ACCTGC 2 cut(s) 27, 115
BspPI GGATC 4 cut(s) 34, 47, 79, 133
BspQI GCTCTTC 1 cut(s) 716
BspT107I GGYRCC 2 cut(s) 247, 736
BspTNI GGTCTC 1 cut(s) 502
BsrFI RCCGGY 1 cut(s) 542
BsrI ACTGG 1 cut(s) 251
BssAI RCCGGY 1 cut(s) 542
BssMI GATC 5 cut(s) 26, 52, 71, 125, 155
Bst2UI CCWGG 1 cut(s) 375
Bst4CI ACNGT 5 cut(s) 342, 416, 614, 641, 730
Bst6I CTCTTC 1 cut(s) 716
BstBAI YACGTR 1 cut(s) 553
BstC8I GCNNGC 4 cut(s) 272, 276, 500, 654
BstDEI CTNAG 4 cut(s) 304, 528, 708, 749
BstF5I GGATG 1 cut(s) 445
BstH2I RGCGCY 1 cut(s) 708
BstHHI GCGC 1 cut(s) 707
BstKTI GATC 5 cut(s) 29, 55, 74, 128, 158
BstMAI GTCTC 2 cut(s) 161, 502
BstMBI GATC 5 cut(s) 26, 52, 71, 125, 155
BstMWI GCNNNNNNNGC 3 cut(s) 181, 658, 723
BstNI CCWGG 1 cut(s) 375
BstNSI RCATGY 1 cut(s) 274
BstSCI CCNGG 1 cut(s) 373
BstSFI CTRYAG 3 cut(s) 34, 63, 462
BstSNI TACGTA 1 cut(s) 553
BstV1I GCAGC 2 cut(s) 49, 572
BstX2I RGATCY 1 cut(s) 71
BstYI RGATCY 1 cut(s) 71
BsuI GTATCC 1 cut(s) 478
BsuRI GGCC 3 cut(s) 498, 542, 677
BtrI CACGTC 1 cut(s) 281
BtsCI GGATG 1 cut(s) 445
BtsIMutI CAGTG 1 cut(s) 746
BveI ACCTGC 2 cut(s) 27, 115
Cac8I GCNNGC 4 cut(s) 272, 276, 500, 654
CfoI GCGC 1 cut(s) 707
Cfr10I RCCGGY 1 cut(s) 542
Cfr13I GGNCC 5 cut(s) 104, 309, 496, 540, 675
Csp6I GTAC 2 cut(s) 550, 554
CviAII CATG 1 cut(s) 271
CviJI RGCY 8 cut(s) 12, 240, 498, 532, 542, 634, 661, 677
CviKI_1 RGCY 8 cut(s) 12, 240, 498, 532, 542, 634, 661, 677
CviQI GTAC 2 cut(s) 550, 554
DdeI CTNAG 4 cut(s) 304, 528, 708, 749
DpnI GATC 5 cut(s) 28, 54, 73, 127, 157
DpnII GATC 5 cut(s) 26, 52, 71, 125, 155
DraI TTTAAA 1 cut(s) 424
DraIII CACNNNGTG 1 cut(s) 488
Eam1104I CTCTTC 1 cut(s) 716
EarI CTCTTC 1 cut(s) 716
Eco105I TACGTA 1 cut(s) 553
Eco31I GGTCTC 1 cut(s) 502
Eco47I GGWCC 2 cut(s) 104, 309
EcoO109I RGGNCCY 2 cut(s) 496, 675
EcoRII CCWGG 1 cut(s) 373
FaeI CATG 1 cut(s) 274
FalI AAGNNNNNCTT 2 cut(s) 645, 677
FaqI GGGAC 2 cut(s) 322, 425
FatI CATG 1 cut(s) 270
FauI CCCGC 2 cut(s) 665, 710
FauNDI CATATG 2 cut(s) 289, 682
Fnu4HI GCNGC 2 cut(s) 63, 586
FokI GGATG 1 cut(s) 432
Fsp4HI GCNGC 2 cut(s) 63, 586
FspBI CTAG 1 cut(s) 260
GlaI GCGC 1 cut(s) 706
GluI GCNGC 2 cut(s) 63, 586
GsaI CCCAGC 1 cut(s) 633
HaeII RGCGCY 1 cut(s) 708
HaeIII GGCC 3 cut(s) 498, 542, 677
HapII CCGG 2 cut(s) 543, 740
HhaI GCGC 1 cut(s) 707
Hin1II CATG 1 cut(s) 274
Hin6I GCGC 1 cut(s) 705
HinP1I GCGC 1 cut(s) 705
HincII GTYRAC 1 cut(s) 355
HindII GTYRAC 1 cut(s) 355
HindIII AAGCTT 2 cut(s) 530, 659
HinfI GANTC 3 cut(s) 169, 605, 743
HpaII CCGG 2 cut(s) 543, 740
HphI GGTGA 4 cut(s) 38, 626, 677, 682
Hpy166II GTNNAC 3 cut(s) 104, 284, 355
Hpy188I TCNGA 5 cut(s) 76, 459, 575, 610, 711
Hpy188III TCNNGA 4 cut(s) 87, 260, 365, 622
Hpy8I GTNNAC 3 cut(s) 104, 284, 355
HpyAV CCTTC 2 cut(s) 225, 531
HpyCH4III ACNGT 5 cut(s) 342, 416, 614, 641, 730
HpyCH4IV ACGT 3 cut(s) 280, 382, 552
HpyF10VI GCNNNNNNNGC 3 cut(s) 181, 658, 723
HpyF3I CTNAG 4 cut(s) 304, 528, 708, 749
HpySE526I ACGT 3 cut(s) 280, 382, 552
Hsp92II CATG 1 cut(s) 274
HspAI GCGC 1 cut(s) 705
Kzo9I GATC 5 cut(s) 26, 52, 71, 125, 155
LguI GCTCTTC 1 cut(s) 716
LmnI GCTCC 1 cut(s) 17
Lsp1109I GCAGC 2 cut(s) 49, 572
LweI GCATC 2 cut(s) 119, 183
MaeI CTAG 1 cut(s) 260
MaeII ACGT 3 cut(s) 280, 382, 552
MaeIII GTNAC 1 cut(s) 488
MalI GATC 5 cut(s) 28, 54, 73, 127, 157
MboI GATC 5 cut(s) 26, 52, 71, 125, 155
MboII GAAGA 1 cut(s) 733
MflI RGATCY 1 cut(s) 71
MhlI GDGCHC 1 cut(s) 728
MluCI AATT 3 cut(s) 359, 430, 517
MlyI GAGTC 2 cut(s) 163, 599
MnlI CCTC 6 cut(s) 62, 90, 484, 556, 688, 703
MseI TTAA 4 cut(s) 42, 401, 423, 516
MslI CAYNNNNRTG 1 cut(s) 751
MspI CCGG 2 cut(s) 543, 740
MspR9I CCNGG 1 cut(s) 375
Mva1269I GAATGC 2 cut(s) 631, 674
MvaI CCWGG 1 cut(s) 375
MwoI GCNNNNNNNGC 3 cut(s) 181, 658, 723
NdeI CATATG 2 cut(s) 289, 682
NdeII GATC 5 cut(s) 26, 52, 71, 125, 155
NlaIII CATG 1 cut(s) 274
NlaIV GGNNCC 7 cut(s) 13, 213, 249, 310, 567, 676, 738
NmuCI GTSAC 1 cut(s) 488
NspI RCATGY 1 cut(s) 274
PaeI GCATGC 1 cut(s) 274
PciSI GCTCTTC 1 cut(s) 716
PctI GAATGC 2 cut(s) 631, 674
PfeI GAWTC 1 cut(s) 743
Pfl23II CGTACG 1 cut(s) 553
PkrI GCNGC 2 cut(s) 64, 587
PleI GAGTC 2 cut(s) 163, 599
PpsI GAGTC 2 cut(s) 163, 599
Ppu21I YACGTR 1 cut(s) 553
PsiI TTATAA 1 cut(s) 327
Psp1406I AACGTT 1 cut(s) 382
Psp6I CCWGG 1 cut(s) 373
PspFI CCCAGC 1 cut(s) 629
PspGI CCWGG 1 cut(s) 373
PspLI CGTACG 1 cut(s) 553
PspN4I GGNNCC 7 cut(s) 13, 213, 249, 310, 567, 676, 738
PspPI GGNCC 5 cut(s) 104, 309, 496, 540, 675
PstI CTGCAG 3 cut(s) 38, 67, 466
PsuI RGATCY 1 cut(s) 71
RsaI GTAC 2 cut(s) 551, 555
RsaNI GTAC 2 cut(s) 550, 554
RseI CAYNNNNRTG 1 cut(s) 751
SapI GCTCTTC 1 cut(s) 716
SaqAI TTAA 4 cut(s) 42, 401, 423, 516
SatI GCNGC 2 cut(s) 63, 586
Sau3AI GATC 5 cut(s) 26, 52, 71, 125, 155
Sau96I GGNCC 5 cut(s) 104, 309, 496, 540, 675
SchI GAGTC 2 cut(s) 163, 599
ScrFI CCNGG 1 cut(s) 375
SduI GDGCHC 1 cut(s) 728
SfaNI GCATC 2 cut(s) 119, 183
SfcI CTRYAG 3 cut(s) 34, 63, 462
SinI GGWCC 2 cut(s) 104, 309
SmiMI CAYNNNNRTG 1 cut(s) 751
SmlI CTYRAG 1 cut(s) 204
SmoI CTYRAG 1 cut(s) 204
SnaBI TACGTA 1 cut(s) 553
SphI GCATGC 1 cut(s) 274
Sse9I AATT 3 cut(s) 359, 430, 517
SsiI CCGC 3 cut(s) 173, 672, 717
SspMI CTAG 1 cut(s) 260
StyD4I CCNGG 1 cut(s) 373
TaaI ACNGT 5 cut(s) 342, 416, 614, 641, 730
TaiI ACGT 3 cut(s) 283, 385, 555
TaqI TCGA 1 cut(s) 603
TasI AATT 3 cut(s) 359, 430, 517
TfiI GAWTC 1 cut(s) 743
Tru1I TTAA 4 cut(s) 42, 401, 423, 516
Tru9I TTAA 4 cut(s) 42, 401, 423, 516
TscAI CASTG 1 cut(s) 753
TseFI GTSAC 1 cut(s) 488
TseI GCWGC 2 cut(s) 62, 585
Tsp45I GTSAC 1 cut(s) 488
TspDTI ATGAA 1 cut(s) 634
TspRI CASTG 1 cut(s) 753
VpaK11BI GGWCC 2 cut(s) 104, 309
XapI RAATTY 1 cut(s) 359
XbaI TCTAGA 1 cut(s) 259
XceI RCATGY 1 cut(s) 274
XspI CTAG 1 cut(s) 260
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.