FvH4_5g07100

zinc finger CCCH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000602
Physical Location & Seq
Forward (+)
4182324 .. 4187379
5056 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g07100.t4

Sequence Viewer

Length: 1326 bp
ATGAACCTCTCTGAATCCTCATCCTCGGTCGTCTCTATTTCCTCGAATCTCGATTCCGATACCGTCAACAACAACGAAATTGATCAGGTTCTGCTCAGCGATTCCGACATAGGGTCTCAACACTCCACCGCCGCCGAGAGGGAGGAGGACCGTCACTGCTCCTGTGGTGATGGTGACGTGCCGGCGGTTGTCCGTTCCGGTCCCGATCCCGATGCTGTTGACCTCGATCATGCGGTGAGCGATGAGATTCAGAAGCTGGATTTGAAAGGTGAGGTGGCGGTGGAGGAGGTGGTAGAGGAGGAGAAGAAAGAGGTGGTAGAGGAGGAGAAGAAAGAGGAGGTTGAGGCGGAGAAGAGCTGTAATGGTGGCGAAATCGAAGACAAAAGTAGTGAGAGACAGAGTGAGGAGGAGAGCAATGAAGGAGGAGAGAATGGTGTTGAGGTGGAGAAGAAGGGAGGAGAATATAACAGATGGTATCAGTACCCGGTGAGGCTTGAAGCCGAAGACTGTTCCTTTTACCTGAAGACGGGGTCTTGCAAGTTCGGATCCAATTGCAAGTTTAATCACCCTGTTAGAAGGAAGAGCAACAATCAGTCCCAGGTTTTTAAAGACAAAGTGAAGGAAGGGAATGAGTTGTCAGAGAAGCCAAGCCAGACAGAATGCAAGTATTACTTAAGGCCAGGGGGATGCAAATATGGAAACGGTTGCAGATACATCCATGGAAAGGGGAAAACTCCGGTAGCTCCAGTTGAGGAACTTAACTTTCTGGGACTGCCAATTCGACAGGGGGAGAGAGAGTGTCCCTATTATATGCGCACTGGCTCGTGCAAGTATGGATCAAACTGCAAGTATAATCACCCTGATCCTACTGCTGCAGGAGGATCTGACCCTCCGTCTGGATTTGGTAACAGCGGACCTGCATCATTACAAGGTGGATCACAATCATCATCTTGGTCTGCACCTAGATCATTGAATGAGACTCCGCCTTATGTGCCAATGATGATGCCACCATCTCAAGGAGTTCCTTCTCGAAATACAGAATGGAATGGTTATCAGGCACCAGTATATCTAGAAAGAAGCATGCCTGCACCGCCACCATATGTTATCAACAACTCAGGGATTGAAACCAATATGTATAAACAATATCCACAGTCAAATCAAGTTGATGAATTCCCAGAACGGCCTGGACAACCTTTATGCAGTTTCTTTTTAAGAACAGGGGACTGTAAGTTTAAATCTAATTGCAAATATCATCATCCGAAAAGTCAGACTGCAGTATCCCCCTCATTTGCACTCAGTGACAAGGGCCTTCCTTTGAGACCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-CCCH zf-CCCH_2

Protein Analysis

442

Amino Acids

48.67

Weight (kDa)

4.99

Isoelectric Point (pI)

62.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-CCCH PF00642 160 - 182 2.8e-10 Zinc finger C-x8-C-x5-C-x3-H type (and similar)
zf-CCCH PF00642 255 - 279 7.5e-11 Zinc finger C-x8-C-x5-C-x3-H type (and similar)
zf_CCCH_4 PF18345 259 - 278 9.1e-06 Zinc finger domain
zf-CCCH_4 PF18044 259 - 279 2.9e-06 CCCH-type zinc finger
zf-CCCH PF00642 387 - 413 4e-07 Zinc finger C-x8-C-x5-C-x3-H type (and similar)
zf-CCCH PF00642 434 - 458 1.4e-08 Zinc finger C-x8-C-x5-C-x3-H type (and similar)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000602)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G48195 AT3G48440 AT5G63260 AT5G63260
fragaria_vesca FvH4_5g07100 FvH4_5g07100 FvH4_5g07100 FvH4_5g07100 FvH4_5g07100 FvH4_5g07100 FvH4_5g07100
malus_domestica MD06G1158800.v1.1 MD06G1159000.v1.1 MD06G1159200.v1.1 MD14G1165100.v1.1 MD14G1165300.v1.1 MD14G1165400.v1.1 MD14G1165500.v1.1
prunus_persica Prupe.5G158300_v2.0.a1 Prupe.5G158300_v2.0.a1 Prupe.5G158400_v2.0.a1 Prupe.5G158400_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158600_v2.0.a1 Prupe.5G158700_v2.0.a1 Prupe.5G158800_v2.0.a1 Prupe.5G158900_v2.0.a1 Prupe.5G159000_v2.0.a1 Prupe.5G159100_v2.0.a1 Prupe.5G159100_v2.0.a1
pyrus_communis pycom02g00910 pycom06g14200 pycom14g13760 pycom14g13790 pycom14g13800
rosa_chinensis RchiOBHm_Chr5g0019351 RchiOBHm_Chr5g0022771 RchiOBHm_Chr7g0191441 RchiOBHm_Chr7g0191531
rosa_laevigata RLG00000004449 RLG00000032440
rosa_multiflora Rmu_sc0001809.1_g000062 Rmu_sc0005292.1_g000027
rosa_roxburghii Rroxscaffold_1G00074260 Rroxscaffold_6G00390280 Rroxscaffold_7G00168660
rosa_rugosa Rorug05G0049600 Rorug05G0049700 Rorug05G0049800 Rorug06G0510400
rosa_samantha Rh5CG151400 Rh5DG140300 Rh7AG118400 Rh7BG120400 Rh7CG123200 Rh7DG121300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 815
Acc36I ACCTGC 1 cut(s) 925
AccB1I GGYRCC 1 cut(s) 1057
AciI CCGC 9 cut(s) 129, 132, 185, 233, 278, 347, 912, 983, 1091
AclWI GGATC 7 cut(s) 200, 540, 553, 844, 857, 889, 943
AcsI RAATTY 1 cut(s) 1169
AcuI CTGAAG 1 cut(s) 542
AdeI CACNNNGTG 1 cut(s) 1298
AfaI GTAC 1 cut(s) 482
AfiI CCNNNNNNNGG 6 cut(s) 111, 138, 526, 724, 896, 1016
AflII CTTAAG 1 cut(s) 673
AgsI TTSAA 4 cut(s) 265, 497, 973, 1124
AhdI GACNNNNNGTC 2 cut(s) 112, 892
AjiI CACGTC 1 cut(s) 178
AjnI CCWGG 3 cut(s) 597, 679, 1183
AluBI AGCT 3 cut(s) 256, 357, 743
AluI AGCT 3 cut(s) 256, 357, 743
Alw26I GTCTC 5 cut(s) 37, 120, 388, 971, 1312
AlwI GGATC 7 cut(s) 200, 540, 553, 844, 857, 889, 943
AlwNI CAGNNNCTG 2 cut(s) 91, 256
AoxI GGCC 3 cut(s) 677, 1181, 1306
ApeKI GCWGC 1 cut(s) 872
ApoI RAATTY 1 cut(s) 1169
ArsI GACNNNNNNTTYG 2 cut(s) 762, 794
AspLEI GCGC 1 cut(s) 816
AspS9I GGNCC 4 cut(s) 148, 200, 914, 1306
AsuC2I CCSGG 1 cut(s) 485
AsuHPI GGTGA 7 cut(s) 179, 185, 247, 281, 499, 557, 848
AvaII GGWCC 3 cut(s) 148, 200, 914
BaeI ACNNNNGTAYC 2 cut(s) 1260, 1293
BamHI GGATCC 1 cut(s) 545
BanI GGYRCC 1 cut(s) 1057
BauI CACGAG 1 cut(s) 823
BbsI GAAGAC 3 cut(s) 384, 510, 530
BbvI GCAGC 1 cut(s) 859
BccI CCATC 3 cut(s) 164, 465, 1018
BceAI ACGGC 1 cut(s) 1196
BcgI CGANNNNNNTGC 2 cut(s) 194, 228
BciT130I CCWGG 3 cut(s) 599, 681, 1185
BciVI GTATCC 1 cut(s) 1288
BclI TGATCA 1 cut(s) 82
BcnI CCSGG 1 cut(s) 485
BcoDI GTCTC 5 cut(s) 37, 120, 388, 971, 1312
BfaI CTAG 2 cut(s) 963, 1070
BfmI CTRYAG 2 cut(s) 873, 1272
BfrI CTTAAG 1 cut(s) 673
BfuAI ACCTGC 1 cut(s) 925
BfuI GTATCC 1 cut(s) 1288
BisI GCNGC 2 cut(s) 132, 873
BlpI GCTNAGC 1 cut(s) 95
BlsI GCNGC 2 cut(s) 133, 874
Bme1390I CCNGG 4 cut(s) 485, 599, 681, 1185
Bme18I GGWCC 3 cut(s) 148, 200, 914
BmeRI GACNNNNNGTC 2 cut(s) 112, 892
BmgBI CACGTC 1 cut(s) 178
BmgT120I GGNCC 4 cut(s) 148, 200, 914, 1306
BmiI GGNNCC 3 cut(s) 202, 547, 1059
BmrFI CCNGG 4 cut(s) 485, 599, 681, 1185
BmsI GCATC 4 cut(s) 202, 677, 929, 993
BpiI GAAGAC 3 cut(s) 384, 510, 530
BpmI CTGGAG 1 cut(s) 729
Bpu1102I GCTNAGC 1 cut(s) 95
BpuEI CTTGAG 1 cut(s) 999
BpuMI CCSGG 1 cut(s) 485
BsaBI GATNNNNATC 1 cut(s) 940
BsaI GGTCTC 2 cut(s) 120, 1312
BsaJI CCNNGG 4 cut(s) 24, 597, 680, 718
BsaWI WCCGGW 2 cut(s) 197, 736
BsaXI ACNNNNNCTCC 2 cut(s) 782, 812
Bsc4I CCNNNNNNNGG 6 cut(s) 111, 138, 526, 724, 896, 1016
Bse118I RCCGGY 1 cut(s) 181
Bse1I ACTGG 3 cut(s) 746, 823, 1061
Bse3DI GCAATG 1 cut(s) 421
Bse8I GATNNNNATC 1 cut(s) 940
BseBI CCWGG 3 cut(s) 599, 681, 1185
BseDI CCNNGG 4 cut(s) 24, 597, 680, 718
BseGI GGATG 4 cut(s) 20, 692, 714, 1255
BseJI GATNNNNATC 1 cut(s) 940
BseLI CCNNNNNNNGG 6 cut(s) 111, 138, 526, 724, 896, 1016
BseMI GCAATG 1 cut(s) 421
BseMII CTCAG 3 cut(s) 109, 1128, 1309
BseNI ACTGG 3 cut(s) 746, 823, 1061
BseXI GCAGC 1 cut(s) 859
BsgI GTGCAG 2 cut(s) 942, 1071
Bsh1285I CGRYCG 1 cut(s) 30
BshFI GGCC 3 cut(s) 679, 1183, 1308
BshNI GGYRCC 1 cut(s) 1057
BsiEI CGRYCG 1 cut(s) 30
BsiSI CCGG 4 cut(s) 182, 198, 485, 737
BslFI GGGAC 5 cut(s) 186, 580, 783, 786, 1235
BslI CCNNNNNNNGG 6 cut(s) 111, 138, 526, 724, 896, 1016
BsmAI GTCTC 5 cut(s) 37, 120, 388, 971, 1312
BsmBI CGTCTC 1 cut(s) 37
BsmFI GGGAC 5 cut(s) 186, 580, 783, 786, 1235
BsmI GAATGC 1 cut(s) 665
BsnI GGCC 3 cut(s) 679, 1183, 1308
Bso31I GGTCTC 2 cut(s) 120, 1312
Bsp143I GATC 9 cut(s) 82, 205, 226, 545, 836, 862, 881, 935, 965
Bsp1720I GCTNAGC 1 cut(s) 95
Bsp19I CCATGG 1 cut(s) 718
BspACI CCGC 9 cut(s) 129, 132, 185, 233, 278, 347, 912, 983, 1091
BspANI GGCC 3 cut(s) 679, 1183, 1308
BspCNI CTCAG 3 cut(s) 108, 1127, 1308
BspLI GGNNCC 3 cut(s) 202, 547, 1059
BspMAI CTGCAG 2 cut(s) 877, 1276
BspMI ACCTGC 1 cut(s) 925
BspPI GGATC 7 cut(s) 200, 540, 553, 844, 857, 889, 943
BspQI GCTCTTC 2 cut(s) 347, 575
BspT107I GGYRCC 1 cut(s) 1057
BspTI CTTAAG 1 cut(s) 673
BspTNI GGTCTC 2 cut(s) 120, 1312
BsrDI GCAATG 1 cut(s) 421
BsrFI RCCGGY 1 cut(s) 181
BsrI ACTGG 3 cut(s) 746, 823, 1061
BssAI RCCGGY 1 cut(s) 181
BssECI CCNNGG 4 cut(s) 24, 597, 680, 718
BssMI GATC 9 cut(s) 82, 205, 226, 545, 836, 862, 881, 935, 965
BssSI CACGAG 1 cut(s) 823
BssT1I CCWWGG 1 cut(s) 718
Bst2BI CACGAG 1 cut(s) 823
Bst2UI CCWGG 3 cut(s) 599, 681, 1185
Bst4CI ACNGT 6 cut(s) 64, 152, 509, 704, 1152, 1226
Bst6I CTCTTC 2 cut(s) 347, 575
BstAFI CTTAAG 1 cut(s) 673
BstC8I GCNNGC 3 cut(s) 183, 1082, 1086
BstDEI CTNAG 3 cut(s) 95, 1114, 1295
BstDSI CCRYGG 1 cut(s) 718
BstF5I GGATG 4 cut(s) 20, 692, 714, 1255
BstHHI GCGC 1 cut(s) 816
BstKTI GATC 9 cut(s) 85, 208, 229, 548, 839, 865, 884, 938, 968
BstMAI GTCTC 5 cut(s) 37, 120, 388, 971, 1312
BstMBI GATC 9 cut(s) 82, 205, 226, 545, 836, 862, 881, 935, 965
BstMCI CGRYCG 1 cut(s) 30
BstMWI GCNNNNNNNGC 2 cut(s) 991, 1090
BstNI CCWGG 3 cut(s) 599, 681, 1185
BstNSI RCATGY 1 cut(s) 1084
BstSCI CCNGG 4 cut(s) 483, 597, 679, 1183
BstSFI CTRYAG 2 cut(s) 873, 1272
BstV1I GCAGC 1 cut(s) 859
BstV2I GAAGAC 3 cut(s) 384, 510, 530
BstX2I RGATCY 2 cut(s) 545, 881
BstYI RGATCY 2 cut(s) 545, 881
BsuI GTATCC 1 cut(s) 1288
BsuRI GGCC 3 cut(s) 679, 1183, 1308
BtgI CCRYGG 1 cut(s) 718
BtgZI GCGATG 1 cut(s) 255
BtrI CACGTC 1 cut(s) 178
BtsCI GGATG 4 cut(s) 20, 692, 714, 1255
BtsI GCAGTG 1 cut(s) 154
BtsIMutI CAGTG 3 cut(s) 154, 816, 1303
BveI ACCTGC 1 cut(s) 925
Cac8I GCNNGC 3 cut(s) 183, 1082, 1086
CaiI CAGNNNCTG 2 cut(s) 91, 256
CfoI GCGC 1 cut(s) 816
Cfr10I RCCGGY 1 cut(s) 181
Cfr13I GGNCC 4 cut(s) 148, 200, 914, 1306
Csp6I GTAC 1 cut(s) 481
CviAII CATG 4 cut(s) 230, 719, 1081, 1323
CviQI GTAC 1 cut(s) 481
DdeI CTNAG 3 cut(s) 95, 1114, 1295
DpnI GATC 9 cut(s) 84, 207, 228, 547, 838, 864, 883, 937, 967
DpnII GATC 9 cut(s) 82, 205, 226, 545, 836, 862, 881, 935, 965
DraI TTTAAA 2 cut(s) 607, 1234
DraIII CACNNNGTG 1 cut(s) 1298
DriI GACNNNNNGTC 2 cut(s) 112, 892
Eam1104I CTCTTC 2 cut(s) 347, 575
Eam1105I GACNNNNNGTC 2 cut(s) 112, 892
EarI CTCTTC 2 cut(s) 347, 575
EciI GGCGGA 2 cut(s) 362, 972
Eco130I CCWWGG 1 cut(s) 718
Eco31I GGTCTC 2 cut(s) 120, 1312
Eco47I GGWCC 3 cut(s) 148, 200, 914
Eco57I CTGAAG 1 cut(s) 542
EcoO109I RGGNCCY 1 cut(s) 1306
EcoRI GAATTC 1 cut(s) 1169
EcoRII CCWGG 3 cut(s) 597, 679, 1183
EcoT14I CCWWGG 1 cut(s) 718
ErhI CCWWGG 1 cut(s) 718
Esp3I CGTCTC 1 cut(s) 37
FaeI CATG 4 cut(s) 233, 722, 1084, 1326
FalI AAGNNNNNCTT 2 cut(s) 656, 688
FaqI GGGAC 5 cut(s) 186, 580, 783, 786, 1235
FatI CATG 4 cut(s) 229, 718, 1080, 1322
FauNDI CATATG 1 cut(s) 1099
FbaI TGATCA 1 cut(s) 82
Fnu4HI GCNGC 2 cut(s) 132, 873
FokI GGATG 4 cut(s) 7, 699, 701, 1242
Fsp4HI GCNGC 2 cut(s) 132, 873
FspAI RTGCGCAY 1 cut(s) 815
FspBI CTAG 2 cut(s) 963, 1070
FspI TGCGCA 1 cut(s) 815
GlaI GCGC 1 cut(s) 815
GluI GCNGC 2 cut(s) 132, 873
GsuI CTGGAG 1 cut(s) 729
HaeIII GGCC 3 cut(s) 679, 1183, 1308
HapII CCGG 4 cut(s) 182, 198, 485, 737
HhaI GCGC 1 cut(s) 816
Hin1II CATG 4 cut(s) 233, 722, 1084, 1326
Hin6I GCGC 1 cut(s) 814
HinP1I GCGC 1 cut(s) 814
HincII GTYRAC 2 cut(s) 67, 220
HindII GTYRAC 2 cut(s) 67, 220
HinfI GANTC 6 cut(s) 14, 46, 53, 101, 247, 979
HpaII CCGG 4 cut(s) 182, 198, 485, 737
HphI GGTGA 7 cut(s) 179, 185, 247, 281, 499, 557, 848
Hpy166II GTNNAC 2 cut(s) 67, 220
Hpy188I TCNGA 9 cut(s) 13, 58, 106, 252, 545, 640, 886, 1260, 1269
Hpy188III TCNNGA 6 cut(s) 50, 203, 209, 897, 1029, 1070
Hpy8I GTNNAC 2 cut(s) 67, 220
HpyAV CCTTC 7 cut(s) 413, 445, 570, 613, 617, 1035, 1319
HpyCH4III ACNGT 6 cut(s) 64, 152, 509, 704, 1152, 1226
HpyCH4IV ACGT 1 cut(s) 177
HpyF10VI GCNNNNNNNGC 2 cut(s) 991, 1090
HpyF3I CTNAG 3 cut(s) 95, 1114, 1295
HpySE526I ACGT 1 cut(s) 177
Hsp92II CATG 4 cut(s) 233, 722, 1084, 1326
HspAI GCGC 1 cut(s) 814
KroI GCCGGC 1 cut(s) 181
KroNI GCCGGC 1 cut(s) 183
Ksp22I TGATCA 1 cut(s) 82
Kzo9I GATC 9 cut(s) 82, 205, 226, 545, 836, 862, 881, 935, 965
LguI GCTCTTC 2 cut(s) 347, 575
LmnI GCTCC 2 cut(s) 164, 748
Lsp1109I GCAGC 1 cut(s) 859
LweI GCATC 4 cut(s) 202, 677, 929, 993
MaeI CTAG 2 cut(s) 963, 1070
MaeII ACGT 1 cut(s) 177
MaeIII GTNAC 4 cut(s) 152, 173, 905, 1298
MalI GATC 9 cut(s) 84, 207, 228, 547, 838, 864, 883, 937, 967
MboI GATC 9 cut(s) 82, 205, 226, 545, 836, 862, 881, 935, 965
MboII GAAGA 8 cut(s) 316, 340, 364, 389, 460, 515, 535, 592
MfeI CAATTG 1 cut(s) 550
MflI RGATCY 2 cut(s) 545, 881
MluCI AATT 5 cut(s) 78, 550, 777, 1169, 1240
MlyI GAGTC 1 cut(s) 973
MmeI TCCRAC 1 cut(s) 129
MroNI GCCGGC 1 cut(s) 181
MseI TTAA 6 cut(s) 561, 606, 674, 759, 1211, 1233
MspA1I CMGCKG 1 cut(s) 912
MspCI CTTAAG 1 cut(s) 673
MspI CCGG 4 cut(s) 182, 198, 485, 737
MspR9I CCNGG 4 cut(s) 485, 599, 681, 1185
MunI CAATTG 1 cut(s) 550
Mva1269I GAATGC 1 cut(s) 665
MvaI CCWGG 3 cut(s) 599, 681, 1185
MwoI GCNNNNNNNGC 2 cut(s) 991, 1090
NaeI GCCGGC 1 cut(s) 183
NciI CCSGG 1 cut(s) 485
NcoI CCATGG 1 cut(s) 718
NdeI CATATG 1 cut(s) 1099
NdeII GATC 9 cut(s) 82, 205, 226, 545, 836, 862, 881, 935, 965
NgoMIV GCCGGC 1 cut(s) 181
NlaIII CATG 4 cut(s) 233, 722, 1084, 1326
NlaIV GGNNCC 3 cut(s) 202, 547, 1059
NmeAIII GCCGAG 1 cut(s) 160
NmuCI GTSAC 3 cut(s) 152, 173, 1298
NsbI TGCGCA 1 cut(s) 815
NspI RCATGY 1 cut(s) 1084
PaeI GCATGC 1 cut(s) 1084
PciSI GCTCTTC 2 cut(s) 347, 575
PctI GAATGC 1 cut(s) 665
PdiI GCCGGC 1 cut(s) 183
PfeI GAWTC 5 cut(s) 14, 46, 53, 101, 247
PflFI GACNNNGTC 1 cut(s) 529
PkrI GCNGC 2 cut(s) 133, 874
PleI GAGTC 1 cut(s) 973
PpsI GAGTC 1 cut(s) 973
Psp6I CCWGG 3 cut(s) 597, 679, 1183
PspGI CCWGG 3 cut(s) 597, 679, 1183
PspN4I GGNNCC 3 cut(s) 202, 547, 1059
PspPI GGNCC 4 cut(s) 148, 200, 914, 1306
PstI CTGCAG 2 cut(s) 877, 1276
PstNI CAGNNNCTG 2 cut(s) 91, 256
PsuI RGATCY 2 cut(s) 545, 881
PsyI GACNNNGTC 1 cut(s) 529
RsaI GTAC 1 cut(s) 482
RsaNI GTAC 1 cut(s) 481
SapI GCTCTTC 2 cut(s) 347, 575
SaqAI TTAA 6 cut(s) 561, 606, 674, 759, 1211, 1233
SatI GCNGC 2 cut(s) 132, 873
Sau3AI GATC 9 cut(s) 82, 205, 226, 545, 836, 862, 881, 935, 965
Sau96I GGNCC 4 cut(s) 148, 200, 914, 1306
SchI GAGTC 1 cut(s) 973
ScrFI CCNGG 4 cut(s) 485, 599, 681, 1185
SfaNI GCATC 4 cut(s) 202, 677, 929, 993
SfcI CTRYAG 2 cut(s) 873, 1272
SinI GGWCC 3 cut(s) 148, 200, 914
SmlI CTYRAG 2 cut(s) 673, 1014
SmoI CTYRAG 2 cut(s) 673, 1014
SphI GCATGC 1 cut(s) 1084
Sse9I AATT 5 cut(s) 78, 550, 777, 1169, 1240
SsiI CCGC 9 cut(s) 129, 132, 185, 233, 278, 347, 912, 983, 1091
SspMI CTAG 2 cut(s) 963, 1070
StyD4I CCNGG 4 cut(s) 483, 597, 679, 1183
StyI CCWWGG 1 cut(s) 718
TaaI ACNGT 6 cut(s) 64, 152, 509, 704, 1152, 1226
TaiI ACGT 1 cut(s) 180
TaqI TCGA 6 cut(s) 44, 51, 225, 375, 781, 1030
TaqII GACCGA 1 cut(s) 16
TasI AATT 5 cut(s) 78, 550, 777, 1169, 1240
TauI GCSGC 1 cut(s) 134
TfiI GAWTC 5 cut(s) 14, 46, 53, 101, 247
Tru1I TTAA 6 cut(s) 561, 606, 674, 759, 1211, 1233
Tru9I TTAA 6 cut(s) 561, 606, 674, 759, 1211, 1233
TscAI CASTG 3 cut(s) 161, 823, 1303
TseFI GTSAC 3 cut(s) 152, 173, 1298
TseI GCWGC 1 cut(s) 872
Tsp45I GTSAC 3 cut(s) 152, 173, 1298
TspDTI ATGAA 3 cut(s) 17, 432, 1182
TspGWI ACGGA 2 cut(s) 182, 882
TspRI CASTG 3 cut(s) 161, 823, 1303
Tth111I GACNNNGTC 1 cut(s) 529
Vha464I CTTAAG 1 cut(s) 673
VpaK11BI GGWCC 3 cut(s) 148, 200, 914
XapI RAATTY 1 cut(s) 1169
XbaI TCTAGA 1 cut(s) 1069
XceI RCATGY 1 cut(s) 1084
XspI CTAG 2 cut(s) 963, 1070
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.