Rh5CG151400

zinc finger CCCH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0000602
Physical Location & Seq
Reverse (-)
14002245 .. 14018927
16683 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG151400.1

Sequence Viewer

Length: 2289 bp
ATGGAGCTCTCTGAATCCTCCTCCTCTGTTTCCCCAAATCTGGATTTGCATATCGGCAACAGCAACGAAATCGACCAAGTTCAGCTCAATCATTCCGACATAGGGTCTCAACGGTCCACCGCCGCCGACCAGCAGCTGGACAATCACTCCGGTGGTGACGCGGCGGTTAGTCATTCCAGTCCCGATCCCGACGTTGTTGATGTCGTGGATCACGCTGTCGTTGATGAGATTGGGAGATTGGATTTGAGAGGAGACGATGTAGCGGTGGAGGTTGCGGCAGCGGAGGTAGAGGAGAAGAAAGAGGAAGGGGGAGAGGTTGAGGCGGAGGAGAAGAGTTCTAATGGTGGTGGTGGAGAAATCAATGAAAGTGAGAGACAGAGCGAGGAAGAAGAAAACAGGAGTGAGAATGGAGGTGAGGGAGAGAAGAAGGGGGGAGAATATAACAGAAGGTATCAGTACCCAGTGAGGCCTGAAGCTGAAGAGTGTTCCTTTTACCCCAAGACGGGGAATTGCAAGTTCGGTTCCAATCGCAGGTTTAATCACCCTGTTAGAAGGAAAAACAACCAGGTTTTTAAAGACAAGGTGAAGGAAAAGGATGAGTTGTCAGAGAAGCCAAGCCAGACAGAATGCAAGTATTACTTAAGGCCAGGGGGATGTAAGTATGGGGAAGCTTGCAGATACAACCATGGAAAAGGGAAACCTTCGGTTGCTCCAGTTGTGGAACTTAACTTTCTGGGACTGCCAATTCGACGGGGGAAGAGAGAGTGTCCCTACTATATGCGAAATGGCTCCTGCAAGTATGGATCAAACTGCAGGTTTAATCACCCTAATCCTACTGCTGCAGGAGGATCTGACCCTCCATCTGGATTTGATAATGGTGGACCTGCATCATTACAAGGTGGATCGCAATCATCATCTTGGTCTGCACCAAGATCATTGAATGAGACTCCGCTTTGTATGCCAATGATGATGCCACCATCTCAAGGGGTTCCTTCTCAAAATACAGAATGGAATGGCTATCAGTCACCAGTTTATCTAGAAAGAAGCATGCCTGCACGTCCACCATATGTTATCAACAACTCAGGGACCAAAACCAAAGTTTATAAACAATATCCACCGTCAAATCAAGTTGATGAATTTCAAGAACGACCTGGACAACGTTTGTGCAGTTTCTTTTTAAGAACAGGGGACTGTAAGTTTAAATCTAATTGCAAATATCATCATCCAAAAAGTCAGACTGAAGTATCCCCCTCATTTGCACTGAGTGACAAGGGCCTGCCTTTGAGACCATTGTTTCGACCTGCATACGCTATCATGCTGACACACCTCCGTTCCGAAGCACTTGAAAATTTTAAAATAAGACTGGAGCGATCATTGGTCCAAAGAGAAGGGTTTGCTTCATCCATTATTGCCCATTCTGAATCTTGCATGCGTGAGTTTGACCAAGCATGTGCAGATGTTGCCATAAATTCCAATGGGAATGCATATGGCATTGATAAGGAAAAAGCCAAAAGGAAACTTAAGTGCGATATAGAAGCATATGCATCATCTCAACTTGACGAACAATTGTCAAGATTGAAACTGGACTGTGAGAGACAACTTTGGGAAGCTTTAAGTCTTAATGATCCTATAGCGGCTCTGCTACGTGATGGTGACGACGACATCTGGAGGAAAAAAAGGGGACTTCTTCATGATGCCATAGAACTTGTAGATGAACGTTTTTCAAATGAGATTAATGGTTATGCGTTGGACCAAGGAAGAAGTGCCGAAATGTTGCAAATTTTGAGGGACTATGCAAGAAGAGTGGCGAAGGAAAAACCCAGACAGGAGGCTAGTTGTGTTCTGACTCACATGATTAATAGGTTTCTCCAAGCCTTCAATTACGATAGCGATGAAAATGCTAGAACTTGGACTGTGGGGGTTGACATTAGAATTATTACCCATAGTGCTCGCCATGAGTCTCTTAAGATTTTATCTACTCTGGCTGCCATTCGCCTGGATAAGACGCAAGATGATATTGAACGAGTTCTCTCTTCTACTTTAATCGGTGGAGAAATAAGTTCTACAAATGTTCTCGACTCAGTTACTTGGGATATGGTTTCTTCAAATGATACCCTAATTACACCACTGGAGTGCCAGTCGTTGTGGAGACAGTTCAAAGAACAAACCGAGCCTGCTATCTTTCAAGCTTATGCAACACAGGTATTTCTTTCTGAGCTGAACTCTCACTCAGAGTTCGGAAACTTATCGAATAATTTTATTCTTCGATTCTCAGACTTTTATCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-CCCH zf-CCCH_2

Protein Analysis

762

Amino Acids

85.43

Weight (kDa)

5.49

Isoelectric Point (pI)

57.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-CCCH PF00642 207 - 231 3.2e-06 Zinc finger C-x8-C-x5-C-x3-H type (and similar)
zf-CCCH PF00642 252 - 276 2.6e-09 Zinc finger C-x8-C-x5-C-x3-H type (and similar)
zf-CCCH_4 PF18044 256 - 276 5.3e-07 CCCH-type zinc finger
zf-CCCH PF00642 384 - 410 1.2e-06 Zinc finger C-x8-C-x5-C-x3-H type (and similar)
Sey1_3HB PF20428 433 - 730 5e-49 Sey1 three-helix bundle domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000602)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G48195 AT3G48440 AT5G63260 AT5G63260
fragaria_vesca FvH4_5g07100 FvH4_5g07100 FvH4_5g07100 FvH4_5g07100 FvH4_5g07100 FvH4_5g07100 FvH4_5g07100
malus_domestica MD06G1158800.v1.1 MD06G1159000.v1.1 MD06G1159200.v1.1 MD14G1165100.v1.1 MD14G1165300.v1.1 MD14G1165400.v1.1 MD14G1165500.v1.1
prunus_persica Prupe.5G158300_v2.0.a1 Prupe.5G158300_v2.0.a1 Prupe.5G158400_v2.0.a1 Prupe.5G158400_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158600_v2.0.a1 Prupe.5G158700_v2.0.a1 Prupe.5G158800_v2.0.a1 Prupe.5G158900_v2.0.a1 Prupe.5G159000_v2.0.a1 Prupe.5G159100_v2.0.a1 Prupe.5G159100_v2.0.a1
pyrus_communis pycom02g00910 pycom06g14200 pycom14g13760 pycom14g13790 pycom14g13800
rosa_chinensis RchiOBHm_Chr5g0019351 RchiOBHm_Chr5g0022771 RchiOBHm_Chr7g0191441 RchiOBHm_Chr7g0191531
rosa_laevigata RLG00000004449 RLG00000032440
rosa_multiflora Rmu_sc0001809.1_g000062 Rmu_sc0005292.1_g000027
rosa_roxburghii Rroxscaffold_1G00074260 Rroxscaffold_6G00390280 Rroxscaffold_7G00168660
rosa_rugosa Rorug05G0049600 Rorug05G0049700 Rorug05G0049800 Rorug06G0510400
rosa_samantha Rh5CG151400 Rh5DG140300 Rh7AG118400 Rh7BG120400 Rh7CG123200 Rh7DG121300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1104
Acc36I ACCTGC 4 cut(s) 522, 804, 892, 1309
AccB7I CCANNNNNTGG 1 cut(s) 136
AccII CGCG 1 cut(s) 161
AclI AACGTT 2 cut(s) 1159, 1717
AclWI GGATC 6 cut(s) 179, 216, 811, 856, 910, 1619
AcsI RAATTY 4 cut(s) 1136, 1348, 1468, 1779
AcuI CTGAAG 3 cut(s) 492, 498, 1260
AdeI CACNNNGTG 1 cut(s) 1265
AfaI GTAC 1 cut(s) 458
AfiI CCNNNNNNNGG 9 cut(s) 40, 102, 136, 502, 503, 504, 531, 863, 983
AflII CTTAAG 3 cut(s) 640, 1520, 1964
AhdI GACNNNNNGTC 1 cut(s) 103
AjiI CACGTC 1 cut(s) 1058
AjnI CCWGG 4 cut(s) 564, 646, 1150, 1995
AleI CACNNNNGTG 2 cut(s) 150, 2131
AluBI AGCT 8 cut(s) 7, 85, 136, 476, 671, 1610, 2189, 2218
AluI AGCT 8 cut(s) 7, 85, 136, 476, 671, 1610, 2189, 2218
Alw21I GWGCWC 2 cut(s) 9, 1951
Alw26I GTCTC 8 cut(s) 111, 246, 367, 938, 1279, 1588, 1965, 2143
AlwI GGATC 6 cut(s) 179, 216, 811, 856, 910, 1619
AlwNI CAGNNNCTG 1 cut(s) 136
AoxI GGCC 3 cut(s) 467, 644, 1273
ApeKI GCWGC 4 cut(s) 133, 278, 839, 1985
ApoI RAATTY 4 cut(s) 1136, 1348, 1468, 1779
ArsI GACNNNNNNTTYG 4 cut(s) 729, 761, 1278, 1310
AseI ATTAAT 2 cut(s) 1734, 1857
Asp700I GAANNNNTTC 1 cut(s) 2025
AspS9I GGNCC 6 cut(s) 114, 881, 1086, 1273, 1378, 1750
AsuHPI GGTGA 7 cut(s) 167, 425, 533, 595, 815, 1017, 1664
AvaII GGWCC 5 cut(s) 114, 881, 1086, 1378, 1750
BaeI ACNNNNGTAYC 2 cut(s) 1227, 1260
BanII GRGCYC 1 cut(s) 9
Bbv12I GWGCWC 2 cut(s) 9, 1951
BbvI GCAGC 4 cut(s) 145, 290, 826, 1972
BccI CCATC 3 cut(s) 868, 985, 1643
BcgI CGANNNNNNTGC 4 cut(s) 52, 86, 1880, 1914
BciT130I CCWGG 4 cut(s) 566, 648, 1152, 1997
BciVI GTATCC 1 cut(s) 1255
BcoDI GTCTC 8 cut(s) 111, 246, 367, 938, 1279, 1588, 1965, 2143
BfaI CTAG 3 cut(s) 1037, 1833, 1902
BfmI CTRYAG 3 cut(s) 811, 840, 1629
BfrI CTTAAG 3 cut(s) 640, 1520, 1964
BfuAI ACCTGC 4 cut(s) 522, 804, 892, 1309
BfuI GTATCC 1 cut(s) 1255
BisI GCNGC 8 cut(s) 123, 134, 162, 276, 279, 840, 1635, 1986
BlsI GCNGC 8 cut(s) 124, 135, 163, 277, 280, 841, 1636, 1987
Bme1390I CCNGG 4 cut(s) 566, 648, 1152, 1997
Bme18I GGWCC 5 cut(s) 114, 881, 1086, 1378, 1750
BmeRI GACNNNNNGTC 1 cut(s) 103
BmgBI CACGTC 1 cut(s) 1058
BmgT120I GGNCC 6 cut(s) 114, 881, 1086, 1273, 1378, 1750
BmiI GGNNCC 4 cut(s) 523, 790, 990, 1087
BmrFI CCNGG 4 cut(s) 566, 648, 1152, 1997
BmrI ACTGGG 1 cut(s) 455
BmsI GCATC 4 cut(s) 896, 960, 1553, 1684
BmuI ACTGGG 1 cut(s) 455
BplI GAGNNNNNCTC 2 cut(s) 2207, 2239
BpmI CTGGAG 4 cut(s) 696, 1385, 1687, 2150
BpuEI CTTGAG 1 cut(s) 966
BsaAI YACGTR 1 cut(s) 1646
BsaBI GATNNNNATC 1 cut(s) 907
BsaI GGTCTC 2 cut(s) 111, 1279
BsaJI CCNNGG 3 cut(s) 647, 685, 1753
BsaWI WCCGGW 1 cut(s) 149
BsaXI ACNNNNNCTCC 6 cut(s) 131, 161, 243, 273, 2123, 2153
Bsc4I CCNNNNNNNGG 9 cut(s) 40, 102, 136, 502, 503, 504, 531, 863, 983
Bse1I ACTGG 8 cut(s) 177, 461, 713, 1028, 1368, 1587, 2133, 2137
Bse8I GATNNNNATC 1 cut(s) 907
BseBI CCWGG 4 cut(s) 566, 648, 1152, 1997
BseDI CCNNGG 3 cut(s) 647, 685, 1753
BseGI GGATG 4 cut(s) 601, 659, 1222, 1400
BseJI GATNNNNATC 1 cut(s) 907
BseLI CCNNNNNNNGG 9 cut(s) 40, 102, 136, 502, 503, 504, 531, 863, 983
BseMII CTCAG 6 cut(s) 1095, 1253, 2094, 2205, 2244, 2286
BseNI ACTGG 8 cut(s) 177, 461, 713, 1028, 1368, 1587, 2133, 2137
BseRI GAGGAG 5 cut(s) 10, 13, 264, 305, 341
BseXI GCAGC 4 cut(s) 145, 290, 826, 1972
BsgI GTGCAG 4 cut(s) 909, 1038, 1186, 1473
Bsh1236I CGCG 1 cut(s) 161
BshFI GGCC 3 cut(s) 469, 646, 1275
BsiHKAI GWGCWC 2 cut(s) 9, 1951
BsiSI CCGG 1 cut(s) 150
BslFI GGGAC 7 cut(s) 165, 750, 753, 1099, 1202, 1695, 1802
BslI CCNNNNNNNGG 9 cut(s) 40, 102, 136, 502, 503, 504, 531, 863, 983
BsmAI GTCTC 8 cut(s) 111, 246, 367, 938, 1279, 1588, 1965, 2143
BsmBI CGTCTC 1 cut(s) 246
BsmFI GGGAC 7 cut(s) 165, 750, 753, 1099, 1202, 1695, 1802
BsmI GAATGC 2 cut(s) 632, 1486
BsnI GGCC 3 cut(s) 469, 646, 1275
Bso31I GGTCTC 2 cut(s) 111, 1279
Bsp1286I GDGCHC 2 cut(s) 9, 1951
Bsp143I GATC 8 cut(s) 184, 208, 803, 848, 902, 932, 1370, 1624
Bsp19I CCATGG 1 cut(s) 685
BspANI GGCC 3 cut(s) 469, 646, 1275
BspCNI CTCAG 6 cut(s) 1094, 1254, 2093, 2206, 2243, 2285
BspFNI CGCG 1 cut(s) 161
BspHI TCATGA 1 cut(s) 1690
BspLI GGNNCC 4 cut(s) 523, 790, 990, 1087
BspMAI CTGCAG 2 cut(s) 815, 844
BspMI ACCTGC 4 cut(s) 522, 804, 892, 1309
BspPI GGATC 6 cut(s) 179, 216, 811, 856, 910, 1619
BspTI CTTAAG 3 cut(s) 640, 1520, 1964
BspTNI GGTCTC 2 cut(s) 111, 1279
BsrI ACTGG 8 cut(s) 177, 461, 713, 1028, 1368, 1587, 2133, 2137
BssECI CCNNGG 3 cut(s) 647, 685, 1753
BssMI GATC 8 cut(s) 184, 208, 803, 848, 902, 932, 1370, 1624
BssT1I CCWWGG 2 cut(s) 685, 1753
Bst2UI CCWGG 4 cut(s) 566, 648, 1152, 1997
Bst4CI ACNGT 6 cut(s) 114, 1119, 1193, 1589, 1915, 2154
Bst6I CTCTTC 5 cut(s) 326, 474, 752, 1795, 2038
BstAFI CTTAAG 3 cut(s) 640, 1520, 1964
BstAPI GCANNNNNTGC 1 cut(s) 1460
BstBAI YACGTR 1 cut(s) 1646
BstC8I GCNNGC 7 cut(s) 673, 1049, 1053, 1277, 1430, 1951, 2175
BstDEI CTNAG 6 cut(s) 1081, 1262, 2080, 2214, 2230, 2272
BstDSI CCRYGG 1 cut(s) 685
BstF5I GGATG 4 cut(s) 601, 659, 1222, 1400
BstFNI CGCG 1 cut(s) 161
BstKTI GATC 8 cut(s) 187, 211, 806, 851, 905, 935, 1373, 1627
BstMAI GTCTC 8 cut(s) 111, 246, 367, 938, 1279, 1588, 1965, 2143
BstMBI GATC 8 cut(s) 184, 208, 803, 848, 902, 932, 1370, 1624
BstMWI GCNNNNNNNGC 2 cut(s) 958, 1460
BstNI CCWGG 4 cut(s) 566, 648, 1152, 1997
BstNSI RCATGY 3 cut(s) 1051, 1432, 1452
BstSCI CCNGG 4 cut(s) 564, 646, 1150, 1995
BstSFI CTRYAG 3 cut(s) 811, 840, 1629
BstUI CGCG 1 cut(s) 161
BstV1I GCAGC 4 cut(s) 145, 290, 826, 1972
BstX2I RGATCY 1 cut(s) 848
BstXI CCANNNNNNTGG 1 cut(s) 1996
BstYI RGATCY 1 cut(s) 848
BsuI GTATCC 1 cut(s) 1255
BsuRI GGCC 3 cut(s) 469, 646, 1275
BtgI CCRYGG 1 cut(s) 685
BtgZI GCGATG 1 cut(s) 1905
BtrI CACGTC 1 cut(s) 1058
BtsCI GGATG 4 cut(s) 601, 659, 1222, 1400
BtsIMutI CAGTG 3 cut(s) 468, 1259, 2126
BveI ACCTGC 4 cut(s) 522, 804, 892, 1309
Cac8I GCNNGC 7 cut(s) 673, 1049, 1053, 1277, 1430, 1951, 2175
CaiI CAGNNNCTG 1 cut(s) 136
CciI TCATGA 1 cut(s) 1690
Cfr13I GGNCC 6 cut(s) 114, 881, 1086, 1273, 1378, 1750
CseI GACGC 2 cut(s) 167, 2014
CsiI ACCWGGT 1 cut(s) 564
Csp6I GTAC 1 cut(s) 457
CspCI CAANNNNNGTGG 2 cut(s) 1785, 1820
CviAII CATG 8 cut(s) 686, 1048, 1315, 1429, 1449, 1691, 1852, 1955
CviQI GTAC 1 cut(s) 457
DdeI CTNAG 6 cut(s) 1081, 1262, 2080, 2214, 2230, 2272
DpnI GATC 8 cut(s) 186, 210, 805, 850, 904, 934, 1372, 1626
DpnII GATC 8 cut(s) 184, 208, 803, 848, 902, 932, 1370, 1624
DraI TTTAAA 3 cut(s) 574, 1201, 1354
DraIII CACNNNGTG 1 cut(s) 1265
DriI GACNNNNNGTC 1 cut(s) 103
Eam1104I CTCTTC 5 cut(s) 326, 474, 752, 1795, 2038
Eam1105I GACNNNNNGTC 1 cut(s) 103
EarI CTCTTC 5 cut(s) 326, 474, 752, 1795, 2038
EciI GGCGGA 1 cut(s) 338
Ecl136II GAGCTC 1 cut(s) 7
Eco130I CCWWGG 2 cut(s) 685, 1753
Eco147I AGGCCT 1 cut(s) 469
Eco24I GRGCYC 1 cut(s) 9
Eco31I GGTCTC 2 cut(s) 111, 1279
Eco47I GGWCC 5 cut(s) 114, 881, 1086, 1378, 1750
Eco53kI GAGCTC 1 cut(s) 7
Eco57I CTGAAG 3 cut(s) 492, 498, 1260
EcoICRI GAGCTC 1 cut(s) 7
EcoO109I RGGNCCY 1 cut(s) 1273
EcoRII CCWGG 4 cut(s) 564, 646, 1150, 1995
EcoT14I CCWWGG 2 cut(s) 685, 1753
EcoT22I ATGCAT 2 cut(s) 1486, 1546
EcoT38I GRGCYC 1 cut(s) 9
ErhI CCWWGG 2 cut(s) 685, 1753
Esp3I CGTCTC 1 cut(s) 246
FaeI CATG 8 cut(s) 689, 1051, 1318, 1432, 1452, 1694, 1855, 1958
FalI AAGNNNNNCTT 2 cut(s) 623, 655
FaqI GGGAC 7 cut(s) 165, 750, 753, 1099, 1202, 1695, 1802
FatI CATG 8 cut(s) 685, 1047, 1314, 1428, 1448, 1690, 1851, 1954
FauNDI CATATG 3 cut(s) 1066, 1486, 1540
Fnu4HI GCNGC 8 cut(s) 123, 134, 162, 276, 279, 840, 1635, 1986
FokI GGATG 4 cut(s) 608, 666, 1209, 1387
FriOI GRGCYC 1 cut(s) 9
Fsp4HI GCNGC 8 cut(s) 123, 134, 162, 276, 279, 840, 1635, 1986
FspBI CTAG 3 cut(s) 1037, 1833, 1902
GluI GCNGC 8 cut(s) 123, 134, 162, 276, 279, 840, 1635, 1986
GsuI CTGGAG 4 cut(s) 696, 1385, 1687, 2150
HaeIII GGCC 3 cut(s) 469, 646, 1275
HapII CCGG 1 cut(s) 150
HgaI GACGC 2 cut(s) 167, 2014
Hin1II CATG 8 cut(s) 689, 1051, 1318, 1432, 1452, 1694, 1855, 1958
HincII GTYRAC 1 cut(s) 1924
HindII GTYRAC 1 cut(s) 1924
HindIII AAGCTT 3 cut(s) 669, 1608, 2187
HinfI GANTC 7 cut(s) 14, 946, 1421, 1846, 1958, 2078, 2268
HpaII CCGG 1 cut(s) 150
HphI GGTGA 7 cut(s) 167, 425, 533, 595, 815, 1017, 1664
Hpy166II GTNNAC 4 cut(s) 117, 881, 1061, 1924
Hpy8I GTNNAC 4 cut(s) 117, 881, 1061, 1924
Hpy99I CGWCG 3 cut(s) 194, 753, 1661
HpyCH4III ACNGT 6 cut(s) 114, 1119, 1193, 1589, 1915, 2154
HpyCH4IV ACGT 5 cut(s) 192, 1057, 1159, 1645, 1717
HpyF10VI GCNNNNNNNGC 2 cut(s) 958, 1460
HpyF3I CTNAG 6 cut(s) 1081, 1262, 2080, 2214, 2230, 2272
HpySE526I ACGT 5 cut(s) 192, 1057, 1159, 1645, 1717
Hsp92II CATG 8 cut(s) 689, 1051, 1318, 1432, 1452, 1694, 1855, 1958
Kzo9I GATC 8 cut(s) 184, 208, 803, 848, 902, 932, 1370, 1624
LmnI GCTCC 4 cut(s) 4, 715, 794, 1366
Lsp1109I GCAGC 4 cut(s) 145, 290, 826, 1972
LweI GCATC 4 cut(s) 896, 960, 1553, 1684
MabI ACCWGGT 1 cut(s) 564
MaeI CTAG 3 cut(s) 1037, 1833, 1902
MaeII ACGT 5 cut(s) 192, 1057, 1159, 1645, 1717
MaeIII GTNAC 5 cut(s) 155, 1023, 1265, 1652, 2083
MalI GATC 8 cut(s) 186, 210, 805, 850, 904, 934, 1372, 1626
MboI GATC 8 cut(s) 184, 208, 803, 848, 902, 932, 1370, 1624
MfeI CAATTG 1 cut(s) 1565
MflI RGATCY 1 cut(s) 848
MhlI GDGCHC 2 cut(s) 9, 1951
MlyI GAGTC 4 cut(s) 940, 1840, 1967, 2072
MmeI TCCRAC 2 cut(s) 120, 1728
Mph1103I ATGCAT 2 cut(s) 1486, 1546
MroXI GAANNNNTTC 1 cut(s) 2025
MslI CAYNNNNRTG 2 cut(s) 150, 2131
MspA1I CMGCKG 2 cut(s) 136, 281
MspCI CTTAAG 3 cut(s) 640, 1520, 1964
MspI CCGG 1 cut(s) 150
MspR9I CCNGG 4 cut(s) 566, 648, 1152, 1997
MunI CAATTG 1 cut(s) 1565
Mva1269I GAATGC 2 cut(s) 632, 1486
MvaI CCWGG 4 cut(s) 566, 648, 1152, 1997
MvnI CGCG 1 cut(s) 161
MwoI GCNNNNNNNGC 2 cut(s) 958, 1460
NcoI CCATGG 1 cut(s) 685
NdeI CATATG 3 cut(s) 1066, 1486, 1540
NdeII GATC 8 cut(s) 184, 208, 803, 848, 902, 932, 1370, 1624
NlaIII CATG 8 cut(s) 689, 1051, 1318, 1432, 1452, 1694, 1855, 1958
NlaIV GGNNCC 4 cut(s) 523, 790, 990, 1087
NmuCI GTSAC 4 cut(s) 155, 1023, 1265, 1652
NsiI ATGCAT 2 cut(s) 1486, 1546
NspI RCATGY 3 cut(s) 1051, 1432, 1452
OliI CACNNNNGTG 2 cut(s) 150, 2131
PaeI GCATGC 2 cut(s) 1051, 1432
PagI TCATGA 1 cut(s) 1690
PceI AGGCCT 1 cut(s) 469
PctI GAATGC 2 cut(s) 632, 1486
PdmI GAANNNNTTC 1 cut(s) 2025
PfeI GAWTC 3 cut(s) 14, 1421, 2268
PflMI CCANNNNNTGG 1 cut(s) 136
PkrI GCNGC 8 cut(s) 124, 135, 163, 277, 280, 841, 1636, 1987
PleI GAGTC 4 cut(s) 940, 1840, 1966, 2072
PpsI GAGTC 4 cut(s) 940, 1840, 1966, 2072
Ppu21I YACGTR 1 cut(s) 1646
PshBI ATTAAT 2 cut(s) 1734, 1857
PsiI TTATAA 1 cut(s) 1104
Psp124BI GAGCTC 1 cut(s) 9
Psp1406I AACGTT 2 cut(s) 1159, 1717
Psp6I CCWGG 4 cut(s) 564, 646, 1150, 1995
PspGI CCWGG 4 cut(s) 564, 646, 1150, 1995
PspN4I GGNNCC 4 cut(s) 523, 790, 990, 1087
PspPI GGNCC 6 cut(s) 114, 881, 1086, 1273, 1378, 1750
PstI CTGCAG 2 cut(s) 815, 844
PstNI CAGNNNCTG 1 cut(s) 136
PsuI RGATCY 1 cut(s) 848
PvuII CAGCTG 1 cut(s) 136
RsaI GTAC 1 cut(s) 458
RsaNI GTAC 1 cut(s) 457
RseI CAYNNNNRTG 2 cut(s) 150, 2131
SacI GAGCTC 1 cut(s) 9
SatI GCNGC 8 cut(s) 123, 134, 162, 276, 279, 840, 1635, 1986
Sau3AI GATC 8 cut(s) 184, 208, 803, 848, 902, 932, 1370, 1624
Sau96I GGNCC 6 cut(s) 114, 881, 1086, 1273, 1378, 1750
SchI GAGTC 4 cut(s) 940, 1840, 1967, 2072
ScrFI CCNGG 4 cut(s) 566, 648, 1152, 1997
SduI GDGCHC 2 cut(s) 9, 1951
SexAI ACCWGGT 1 cut(s) 564
SfaNI GCATC 4 cut(s) 896, 960, 1553, 1684
SfcI CTRYAG 3 cut(s) 811, 840, 1629
SinI GGWCC 5 cut(s) 114, 881, 1086, 1378, 1750
SmiMI CAYNNNNRTG 2 cut(s) 150, 2131
SmlI CTYRAG 4 cut(s) 640, 981, 1520, 1964
SmoI CTYRAG 4 cut(s) 640, 981, 1520, 1964
SphI GCATGC 2 cut(s) 1051, 1432
SseBI AGGCCT 1 cut(s) 469
SspMI CTAG 3 cut(s) 1037, 1833, 1902
SstI GAGCTC 1 cut(s) 9
StuI AGGCCT 1 cut(s) 469
StyD4I CCNGG 4 cut(s) 564, 646, 1150, 1995
StyI CCWWGG 2 cut(s) 685, 1753
TaaI ACNGT 6 cut(s) 114, 1119, 1193, 1589, 1915, 2154
TaiI ACGT 5 cut(s) 195, 1060, 1162, 1648, 1720
TaqI TCGA 6 cut(s) 72, 748, 1297, 2076, 2249, 2266
TauI GCSGC 4 cut(s) 125, 164, 278, 1637
TfiI GAWTC 3 cut(s) 14, 1421, 2268
TscAI CASTG 3 cut(s) 468, 1266, 2133
TseFI GTSAC 4 cut(s) 155, 1023, 1265, 1652
TseI GCWGC 4 cut(s) 133, 278, 839, 1985
Tsp45I GTSAC 4 cut(s) 155, 1023, 1265, 1652
TspDTI ATGAA 6 cut(s) 378, 1149, 1389, 1679, 1728, 1908
TspGWI ACGGA 1 cut(s) 1319
TspRI CASTG 3 cut(s) 468, 1266, 2133
Van91I CCANNNNNTGG 1 cut(s) 136
Vha464I CTTAAG 3 cut(s) 640, 1520, 1964
VpaK11BI GGWCC 5 cut(s) 114, 881, 1086, 1378, 1750
VspI ATTAAT 2 cut(s) 1734, 1857
XapI RAATTY 4 cut(s) 1136, 1348, 1468, 1779
XbaI TCTAGA 1 cut(s) 1036
XceI RCATGY 3 cut(s) 1051, 1432, 1452
XmnI GAANNNNTTC 1 cut(s) 2025
XspI CTAG 3 cut(s) 1037, 1833, 1902
Zsp2I ATGCAT 2 cut(s) 1486, 1546
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.