RLG00000032440

zinc finger CCCH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0000602
Physical Location & Seq
Reverse (-)
15273177 .. 15294330
21154 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000032440

Sequence Viewer

Length: 2358 bp
ATGGAGCTCTCTGAATCCTCCTCCTCTGTTTCCCCAAATCTGGATTTGCATATCGGCAACAGCAACGAAATCGACCAAGTTCAGCTCAATCATTCCGACATAGGGCCTCAACAGTACACCGCCGCCGACCAGCAGCTGGACAATCACTCCGGTGGTGACGCGGCGGTTAGTCATTCCAGTCCCGATCCCGATGTTGTTGATGTCGTGGATCACGCTGTCGTTGATGAGATTGAGAGATTGGATTTGAGAGGAGACGATGTAGCGGTGGAGGCTGCGGCAGCGGAGGTAGAGGAGAAGAAAGAGGAAGGGGGAGAGGTTGAGGCGGAGGAGAAGAGTTCTAATGGTGGTGGTGGAGAAATCGAAAACGGAAATGAAAGTGAGAGACAGAGCGAGGAAGAAGAGAGCAATGAAGGAGAAAACAGGAGTGAGAATGGAGGTGAGGGAGAGAAGAAGGGGGGAGAATATAACAGAAGGTATCAGTACCCAGTGAGGCCTGAAGCTGAAGACTGTTCCTTTTACCTCAAGACGGGGAATTGCAAGTTCGGTTCCAATTGCAGGTTTAATCACCCTTATTACTTAAGGCCAGGGGGATGTAAGTATGGGAAAGCTTGCAGATACAACCATGGAAAAGGGAAACCTTCGGTTGCTCCAGTTGTGGAACTTAACTTTCTGGGACTACCAATTCGACCAGGGGGGAGAGAGTGTTCCTACTATATGCAAAATGGCTCCTGCAAGTATGGATCAAACTGCAGGTTTAATCACCCTGATCCTACTGCTGCATCATTACAAGGTGGATCGCAATCATCATCTTGGTCTGCACCAAGATCATTGAATGAGACTCTGCTTTATATGCCAATGATGATGCCGCCATCTCAAGGGGTTCCTTCTCAAAATACAGAATGGAATGGCTATCAGGAACCAGTTTATCTAGAAAGAAGCATGCCTGCACGTCCACCATATGTTATCAACAACTCAGGGACCAGAACCGATGTTTATAAACAATATCCACTGTCAAATCAAGTTGATGAATTTCCAGAACGACCTGGACAACGTTTGTGCAGTTTCTTTTTAAGAACAGGGGACTGTAAGCTTAAATCTAATTGCAAATATCATCATCCAAAAAGTCAGACTGCAGTATCCCCCTCATTTGCACTGAGTGACAAGGGCCTGCCTTTGAGACCATTGTTTCGACCTGCATACGCTATCATGCTGACACACCTCCGTTCCGAAGCACTTGAAAATTTTAAAATAAGACTGGAGCGATCATTGGTCCAAAGAGAAGGGTTTGCTTCATCCGTTTTTGCCCATACTGAATCTTGCATGCGTGAGTTTGACCAAGCATGTGCAGATGCTTCGATAGATGTTGCCATAAATTCCAATGGGAATGCATATGGCGTTGATAAGGAAAAAGCCAAAAGGAAACTTAAGTGCGATATAGAAGCATATGCATCATCTCAACTTGACGAACAATTGTCAAGATTGAAACTGGACTGTGAGAGACAACTTTGGGAAGCTTTAAGTCTTAATGATCCTATAGCGGATCTGCTACTTGATGGTGACGACGACATCTGGAGGAAAAAAAGGGGACTTCTTCATGATGCCATAGAACTTGTAGATGAACGTTTTTCAAATGAGATTAATGGTTATGCGTTGGACCAAGGAAGAAGTGCCGAAATGATGCAAATTTTGAGGGACCATGCAAGAAGAGTGGCGGAGGAAAAACCCAGACAGGAGGCTAGTCGTGTTCTGACTCACATGATTAATAGGTTTCTCCAAGCCTTCAATTACGATAGCGATGAAAATGCTAGAACTTGGACTGTGGGGGTTGACATTAGAATTATTACCCAGAATGCTCGCCATGAGTCTCTTAAGATTTTATCTACTCTGGCTGCCATTCGCCTGGATAAGACGCAAGATGATATTGAACGAGTTCTCTCTTCTACTTTAATCAATGGAGAAATAAGTTCTACAAATGTTCTTGACTCAGTTATTACTTGGGATATGGTTTCTTCAAATGATACCCTAATTACACCACCGGAGTGCCAGTTGTTGTGGAGACAGTTCAAAGAACAAACCGAGCCTGCTGTCTTTCAAGCTTATGCAACACAGGTGCTTCACCGGCGAAATAACGCTCCAAATGCCCCAAATGACCCGGAATTTAGCCCATTTTTATGGATAATTGTGGCTATAGTAGTGTTGTTGTCAACAGCCTATGGAATCCCTAACGCCGCATCTCTTGTACCTGAAATTCTAGCACTGCTGCCACGCTTCAGAAGTCAAGCTATTACTCTTTCAGCCATATTTGTGGCTGTGCAGAAAATCGTACAGGCCTACAGAAATCGTCGCTCGCAAAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-CCCH zf-CCCH_2

Protein Analysis

786

Amino Acids

87.83

Weight (kDa)

5.19

Isoelectric Point (pI)

52.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-CCCH PF00642 168 - 190 1.2e-08 Zinc finger C-x8-C-x5-C-x3-H type (and similar)
zf-CCCH PF00642 232 - 255 3.7e-09 Zinc finger C-x8-C-x5-C-x3-H type (and similar)
zf-CCCH_4 PF18044 235 - 255 4.2e-06 CCCH-type zinc finger
zf-CCCH PF00642 348 - 374 4.8e-06 Zinc finger C-x8-C-x5-C-x3-H type (and similar)
Sey1_3HB PF20428 397 - 733 7.2e-49 Sey1 three-helix bundle domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000602)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G48195 AT3G48440 AT5G63260 AT5G63260
fragaria_vesca FvH4_5g07100 FvH4_5g07100 FvH4_5g07100 FvH4_5g07100 FvH4_5g07100 FvH4_5g07100 FvH4_5g07100
malus_domestica MD06G1158800.v1.1 MD06G1159000.v1.1 MD06G1159200.v1.1 MD14G1165100.v1.1 MD14G1165300.v1.1 MD14G1165400.v1.1 MD14G1165500.v1.1
prunus_persica Prupe.5G158300_v2.0.a1 Prupe.5G158300_v2.0.a1 Prupe.5G158400_v2.0.a1 Prupe.5G158400_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158600_v2.0.a1 Prupe.5G158700_v2.0.a1 Prupe.5G158800_v2.0.a1 Prupe.5G158900_v2.0.a1 Prupe.5G159000_v2.0.a1 Prupe.5G159100_v2.0.a1 Prupe.5G159100_v2.0.a1
pyrus_communis pycom02g00910 pycom06g14200 pycom14g13760 pycom14g13790 pycom14g13800
rosa_chinensis RchiOBHm_Chr5g0019351 RchiOBHm_Chr5g0022771 RchiOBHm_Chr7g0191441 RchiOBHm_Chr7g0191531
rosa_laevigata RLG00000004449 RLG00000032440
rosa_multiflora Rmu_sc0001809.1_g000062 Rmu_sc0005292.1_g000027
rosa_roxburghii Rroxscaffold_1G00074260 Rroxscaffold_6G00390280 Rroxscaffold_7G00168660
rosa_rugosa Rorug05G0049600 Rorug05G0049700 Rorug05G0049800 Rorug06G0510400
rosa_samantha Rh5CG151400 Rh5DG140300 Rh7AG118400 Rh7BG120400 Rh7CG123200 Rh7DG121300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 996
Acc36I ACCTGC 3 cut(s) 546, 741, 1201
AccB7I CCANNNNNTGG 1 cut(s) 136
AccII CGCG 1 cut(s) 161
AclI AACGTT 2 cut(s) 1051, 1621
AclWI GGATC 7 cut(s) 179, 216, 748, 761, 802, 1523, 1548
AcsI RAATTY 6 cut(s) 1028, 1240, 1372, 1683, 2156, 2247
AcuI CTGAAG 3 cut(s) 516, 522, 2254
AdeI CACNNNGTG 1 cut(s) 1157
AfaI GTAC 4 cut(s) 116, 482, 2241, 2325
AfiI CCNNNNNNNGG 6 cut(s) 40, 102, 136, 526, 555, 875
AflII CTTAAG 3 cut(s) 577, 1424, 1868
AgsI TTSAA 9 cut(s) 832, 1238, 1483, 1629, 1783, 1925, 2013, 2065, 2093
AjiI CACGTC 1 cut(s) 950
AjnI CCWGG 4 cut(s) 583, 688, 1042, 1899
AleI CACNNNNGTG 2 cut(s) 150, 2038
AloI GAACNNNNNNTCC 2 cut(s) 688, 720
AluBI AGCT 9 cut(s) 7, 85, 136, 500, 608, 1090, 1514, 2096, 2282
AluI AGCT 9 cut(s) 7, 85, 136, 500, 608, 1090, 1514, 2096, 2282
Alw21I GWGCWC 1 cut(s) 9
Alw26I GTCTC 7 cut(s) 246, 376, 830, 1171, 1492, 1869, 2050
AlwI GGATC 7 cut(s) 179, 216, 748, 761, 802, 1523, 1548
AlwNI CAGNNNCTG 1 cut(s) 136
AoxI GGCC 5 cut(s) 104, 491, 581, 1165, 2328
ApeKI GCWGC 6 cut(s) 133, 272, 278, 776, 1889, 2260
ApoI RAATTY 6 cut(s) 1028, 1240, 1372, 1683, 2156, 2247
ArsI GACNNNNNNTTYG 4 cut(s) 666, 698, 1170, 1202
AseI ATTAAT 2 cut(s) 1638, 1761
Asp700I GAANNNNTTC 1 cut(s) 1929
AspS9I GGNCC 6 cut(s) 104, 978, 1165, 1270, 1654, 1693
AsuC2I CCSGG 1 cut(s) 2153
AsuHPI GGTGA 6 cut(s) 167, 449, 557, 752, 1568, 2108
AvaII GGWCC 4 cut(s) 978, 1270, 1654, 1693
BaeI ACNNNNGTAYC 2 cut(s) 1119, 1152
BanII GRGCYC 1 cut(s) 9
BbsI GAAGAC 1 cut(s) 510
Bbv12I GWGCWC 1 cut(s) 9
BbvI GCAGC 6 cut(s) 145, 259, 290, 763, 1876, 2247
BccI CCATC 2 cut(s) 877, 1547
BcgI CGANNNNNNTGC 6 cut(s) 52, 86, 1335, 1369, 1784, 1818
BciT130I CCWGG 4 cut(s) 585, 690, 1044, 1901
BciVI GTATCC 1 cut(s) 1147
BcnI CCSGG 1 cut(s) 2153
BcoDI GTCTC 7 cut(s) 246, 376, 830, 1171, 1492, 1869, 2050
BfaI CTAG 4 cut(s) 929, 1737, 1806, 2252
BfmI CTRYAG 5 cut(s) 748, 1131, 1533, 2187, 2332
BfrI CTTAAG 3 cut(s) 577, 1424, 1868
BfuAI ACCTGC 3 cut(s) 546, 741, 1201
BfuI GTATCC 1 cut(s) 1147
Bme1390I CCNGG 5 cut(s) 585, 690, 1044, 1901, 2153
Bme18I GGWCC 4 cut(s) 978, 1270, 1654, 1693
BmgBI CACGTC 1 cut(s) 950
BmgT120I GGNCC 6 cut(s) 104, 978, 1165, 1270, 1654, 1693
BmiI GGNNCC 6 cut(s) 547, 727, 882, 918, 979, 1694
BmrFI CCNGG 5 cut(s) 585, 690, 1044, 1901, 2153
BmrI ACTGGG 1 cut(s) 479
BmsI GCATC 7 cut(s) 788, 852, 1339, 1457, 1588, 1668, 2240
BmuI ACTGGG 1 cut(s) 479
BpiI GAAGAC 1 cut(s) 510
BpmI CTGGAG 3 cut(s) 633, 1277, 1591
BpuEI CTTGAG 2 cut(s) 506, 858
BpuMI CCSGG 1 cut(s) 2153
BsaBI GATNNNNATC 1 cut(s) 799
BsaI GGTCTC 1 cut(s) 1171
BsaJI CCNNGG 4 cut(s) 584, 622, 689, 1657
BsaWI WCCGGW 2 cut(s) 149, 2035
BsaXI ACNNNNNCTCC 8 cut(s) 131, 161, 243, 273, 688, 718, 2030, 2060
Bsc4I CCNNNNNNNGG 6 cut(s) 40, 102, 136, 526, 555, 875
Bse118I RCCGGY 1 cut(s) 2118
Bse1I ACTGG 7 cut(s) 177, 485, 650, 920, 1260, 1491, 2044
Bse3DI GCAATG 1 cut(s) 412
Bse8I GATNNNNATC 1 cut(s) 799
BseBI CCWGG 4 cut(s) 585, 690, 1044, 1901
BseDI CCNNGG 4 cut(s) 584, 622, 689, 1657
BseGI GGATG 3 cut(s) 596, 1114, 1292
BseJI GATNNNNATC 1 cut(s) 799
BseLI CCNNNNNNNGG 6 cut(s) 40, 102, 136, 526, 555, 875
BseMI GCAATG 1 cut(s) 412
BseMII CTCAG 3 cut(s) 987, 1145, 1998
BseNI ACTGG 7 cut(s) 177, 485, 650, 920, 1260, 1491, 2044
BseRI GAGGAG 5 cut(s) 10, 13, 264, 305, 341
BseXI GCAGC 6 cut(s) 145, 259, 290, 763, 1876, 2247
BsgI GTGCAG 5 cut(s) 801, 930, 1078, 1365, 2333
Bsh1236I CGCG 1 cut(s) 161
BshFI GGCC 5 cut(s) 106, 493, 583, 1167, 2330
BsiHKAI GWGCWC 1 cut(s) 9
BsiSI CCGG 4 cut(s) 150, 2036, 2119, 2153
BslFI GGGAC 6 cut(s) 165, 687, 991, 1094, 1599, 1706
BslI CCNNNNNNNGG 6 cut(s) 40, 102, 136, 526, 555, 875
BsmAI GTCTC 7 cut(s) 246, 376, 830, 1171, 1492, 1869, 2050
BsmBI CGTCTC 1 cut(s) 246
BsmFI GGGAC 6 cut(s) 165, 687, 991, 1094, 1599, 1706
BsmI GAATGC 2 cut(s) 1390, 1855
BsnI GGCC 5 cut(s) 106, 493, 583, 1167, 2330
Bso31I GGTCTC 1 cut(s) 1171
Bsp1286I GDGCHC 1 cut(s) 9
Bsp143I GATC 9 cut(s) 184, 208, 740, 766, 794, 824, 1262, 1528, 1540
Bsp19I CCATGG 1 cut(s) 622
BspANI GGCC 5 cut(s) 106, 493, 583, 1167, 2330
BspCNI CTCAG 3 cut(s) 986, 1146, 1997
BspFNI CGCG 1 cut(s) 161
BspHI TCATGA 1 cut(s) 1594
BspLI GGNNCC 6 cut(s) 547, 727, 882, 918, 979, 1694
BspMAI CTGCAG 2 cut(s) 752, 1135
BspMI ACCTGC 3 cut(s) 546, 741, 1201
BspPI GGATC 7 cut(s) 179, 216, 748, 761, 802, 1523, 1548
BspTI CTTAAG 3 cut(s) 577, 1424, 1868
BspTNI GGTCTC 1 cut(s) 1171
BsrDI GCAATG 1 cut(s) 412
BsrFI RCCGGY 1 cut(s) 2118
BsrI ACTGG 7 cut(s) 177, 485, 650, 920, 1260, 1491, 2044
BssAI RCCGGY 1 cut(s) 2118
BssECI CCNNGG 4 cut(s) 584, 622, 689, 1657
BssMI GATC 9 cut(s) 184, 208, 740, 766, 794, 824, 1262, 1528, 1540
BssT1I CCWWGG 2 cut(s) 622, 1657
Bst2UI CCWGG 4 cut(s) 585, 690, 1044, 1901
Bst4CI ACNGT 7 cut(s) 114, 509, 1011, 1085, 1493, 1819, 2061
Bst6I CTCTTC 4 cut(s) 326, 393, 1699, 1942
BstAFI CTTAAG 3 cut(s) 577, 1424, 1868
BstC8I GCNNGC 8 cut(s) 610, 941, 945, 1169, 1322, 1855, 2082, 2348
BstDEI CTNAG 3 cut(s) 973, 1154, 1984
BstDSI CCRYGG 1 cut(s) 622
BstF5I GGATG 3 cut(s) 596, 1114, 1292
BstFNI CGCG 1 cut(s) 161
BstKTI GATC 9 cut(s) 187, 211, 743, 769, 797, 827, 1265, 1531, 1543
BstMAI GTCTC 7 cut(s) 246, 376, 830, 1171, 1492, 1869, 2050
BstMBI GATC 9 cut(s) 184, 208, 740, 766, 794, 824, 1262, 1528, 1540
BstMWI GCNNNNNNNGC 5 cut(s) 269, 278, 850, 2119, 2138
BstNI CCWGG 4 cut(s) 585, 690, 1044, 1901
BstNSI RCATGY 3 cut(s) 943, 1324, 1344
BstSCI CCNGG 5 cut(s) 583, 688, 1042, 1899, 2151
BstSFI CTRYAG 5 cut(s) 748, 1131, 1533, 2187, 2332
BstUI CGCG 1 cut(s) 161
BstV1I GCAGC 6 cut(s) 145, 259, 290, 763, 1876, 2247
BstV2I GAAGAC 1 cut(s) 510
BstX2I RGATCY 1 cut(s) 1540
BstXI CCANNNNNNTGG 3 cut(s) 1900, 2172, 2305
BstYI RGATCY 1 cut(s) 1540
BsuI GTATCC 1 cut(s) 1147
BsuRI GGCC 5 cut(s) 106, 493, 583, 1167, 2330
BtgI CCRYGG 1 cut(s) 622
BtgZI GCGATG 1 cut(s) 1809
BtrI CACGTC 1 cut(s) 950
BtsCI GGATG 3 cut(s) 596, 1114, 1292
BtsI GCAGTG 1 cut(s) 2255
BtsIMutI CAGTG 4 cut(s) 492, 1007, 1151, 2255
BveI ACCTGC 3 cut(s) 546, 741, 1201
Cac8I GCNNGC 8 cut(s) 610, 941, 945, 1169, 1322, 1855, 2082, 2348
CaiI CAGNNNCTG 1 cut(s) 136
CciI TCATGA 1 cut(s) 1594
Cfr10I RCCGGY 1 cut(s) 2118
Cfr13I GGNCC 6 cut(s) 104, 978, 1165, 1270, 1654, 1693
CseI GACGC 2 cut(s) 167, 1918
Csp6I GTAC 4 cut(s) 115, 481, 2240, 2324
CspCI CAANNNNNGTGG 2 cut(s) 1689, 1724
CviAII CATG 9 cut(s) 623, 940, 1207, 1321, 1341, 1595, 1697, 1756, 1859
CviQI GTAC 4 cut(s) 115, 481, 2240, 2324
DdeI CTNAG 3 cut(s) 973, 1154, 1984
DpnI GATC 9 cut(s) 186, 210, 742, 768, 796, 826, 1264, 1530, 1542
DpnII GATC 9 cut(s) 184, 208, 740, 766, 794, 824, 1262, 1528, 1540
DraI TTTAAA 1 cut(s) 1246
DraIII CACNNNGTG 1 cut(s) 1157
Eam1104I CTCTTC 4 cut(s) 326, 393, 1699, 1942
EarI CTCTTC 4 cut(s) 326, 393, 1699, 1942
EciI GGCGGA 2 cut(s) 338, 1727
Ecl136II GAGCTC 1 cut(s) 7
Eco130I CCWWGG 2 cut(s) 622, 1657
Eco147I AGGCCT 2 cut(s) 493, 2330
Eco24I GRGCYC 1 cut(s) 9
Eco31I GGTCTC 1 cut(s) 1171
Eco47I GGWCC 4 cut(s) 978, 1270, 1654, 1693
Eco53kI GAGCTC 1 cut(s) 7
Eco57I CTGAAG 3 cut(s) 516, 522, 2254
EcoICRI GAGCTC 1 cut(s) 7
EcoO109I RGGNCCY 2 cut(s) 104, 1165
EcoRII CCWGG 4 cut(s) 583, 688, 1042, 1899
EcoT14I CCWWGG 2 cut(s) 622, 1657
EcoT22I ATGCAT 2 cut(s) 1390, 1450
EcoT38I GRGCYC 1 cut(s) 9
ErhI CCWWGG 2 cut(s) 622, 1657
Esp3I CGTCTC 1 cut(s) 246
FaeI CATG 9 cut(s) 626, 943, 1210, 1324, 1344, 1598, 1700, 1759, 1862
FaqI GGGAC 6 cut(s) 165, 687, 991, 1094, 1599, 1706
FatI CATG 9 cut(s) 622, 939, 1206, 1320, 1340, 1594, 1696, 1755, 1858
FauNDI CATATG 3 cut(s) 958, 1390, 1444
FokI GGATG 3 cut(s) 603, 1101, 1279
FriOI GRGCYC 1 cut(s) 9
FspBI CTAG 4 cut(s) 929, 1737, 1806, 2252
GsuI CTGGAG 3 cut(s) 633, 1277, 1591
HaeIII GGCC 5 cut(s) 106, 493, 583, 1167, 2330
HapII CCGG 4 cut(s) 150, 2036, 2119, 2153
HgaI GACGC 2 cut(s) 167, 1918
Hin1II CATG 9 cut(s) 626, 943, 1210, 1324, 1344, 1598, 1700, 1759, 1862
HincII GTYRAC 2 cut(s) 1828, 2205
HindII GTYRAC 2 cut(s) 1828, 2205
HindIII AAGCTT 4 cut(s) 606, 1088, 1512, 2094
HinfI GANTC 7 cut(s) 14, 838, 1313, 1750, 1862, 1982, 2217
HpaII CCGG 4 cut(s) 150, 2036, 2119, 2153
HphI GGTGA 6 cut(s) 167, 449, 557, 752, 1568, 2108
Hpy166II GTNNAC 4 cut(s) 117, 953, 1828, 2205
Hpy188I TCNGA 6 cut(s) 13, 97, 1128, 1228, 1749, 2273
Hpy8I GTNNAC 4 cut(s) 117, 953, 1828, 2205
Hpy99I CGWCG 2 cut(s) 1565, 2346
HpyAV CCTTC 8 cut(s) 299, 404, 445, 465, 648, 894, 1274, 1789
HpyCH4III ACNGT 7 cut(s) 114, 509, 1011, 1085, 1493, 1819, 2061
HpyCH4IV ACGT 3 cut(s) 949, 1051, 1621
HpyF10VI GCNNNNNNNGC 5 cut(s) 269, 278, 850, 2119, 2138
HpyF3I CTNAG 3 cut(s) 973, 1154, 1984
HpySE526I ACGT 3 cut(s) 949, 1051, 1621
Hsp92II CATG 9 cut(s) 626, 943, 1210, 1324, 1344, 1598, 1700, 1759, 1862
Kzo9I GATC 9 cut(s) 184, 208, 740, 766, 794, 824, 1262, 1528, 1540
LmnI GCTCC 5 cut(s) 4, 652, 731, 1258, 2137
Lsp1109I GCAGC 6 cut(s) 145, 259, 290, 763, 1876, 2247
LweI GCATC 7 cut(s) 788, 852, 1339, 1457, 1588, 1668, 2240
MaeI CTAG 4 cut(s) 929, 1737, 1806, 2252
MaeII ACGT 3 cut(s) 949, 1051, 1621
MaeIII GTNAC 3 cut(s) 155, 1157, 1556
MalI GATC 9 cut(s) 186, 210, 742, 768, 796, 826, 1264, 1530, 1542
MboI GATC 9 cut(s) 184, 208, 740, 766, 794, 824, 1262, 1528, 1540
MfeI CAATTG 2 cut(s) 550, 1469
MflI RGATCY 1 cut(s) 1540
MhlI GDGCHC 1 cut(s) 9
MlyI GAGTC 4 cut(s) 832, 1744, 1871, 1976
MmeI TCCRAC 2 cut(s) 120, 1632
Mph1103I ATGCAT 2 cut(s) 1390, 1450
MroXI GAANNNNTTC 1 cut(s) 1929
MslI CAYNNNNRTG 4 cut(s) 150, 2038, 2170, 2303
MspA1I CMGCKG 2 cut(s) 136, 281
MspCI CTTAAG 3 cut(s) 577, 1424, 1868
MspI CCGG 4 cut(s) 150, 2036, 2119, 2153
MspR9I CCNGG 5 cut(s) 585, 690, 1044, 1901, 2153
MunI CAATTG 2 cut(s) 550, 1469
Mva1269I GAATGC 2 cut(s) 1390, 1855
MvaI CCWGG 4 cut(s) 585, 690, 1044, 1901
MvnI CGCG 1 cut(s) 161
MwoI GCNNNNNNNGC 5 cut(s) 269, 278, 850, 2119, 2138
NciI CCSGG 1 cut(s) 2153
NcoI CCATGG 1 cut(s) 622
NdeI CATATG 3 cut(s) 958, 1390, 1444
NdeII GATC 9 cut(s) 184, 208, 740, 766, 794, 824, 1262, 1528, 1540
NlaIII CATG 9 cut(s) 626, 943, 1210, 1324, 1344, 1598, 1700, 1759, 1862
NlaIV GGNNCC 6 cut(s) 547, 727, 882, 918, 979, 1694
NmuCI GTSAC 3 cut(s) 155, 1157, 1556
NsiI ATGCAT 2 cut(s) 1390, 1450
NspI RCATGY 3 cut(s) 943, 1324, 1344
OliI CACNNNNGTG 2 cut(s) 150, 2038
PaeI GCATGC 2 cut(s) 943, 1324
PagI TCATGA 1 cut(s) 1594
PceI AGGCCT 2 cut(s) 493, 2330
PctI GAATGC 2 cut(s) 1390, 1855
PdmI GAANNNNTTC 1 cut(s) 1929
PfeI GAWTC 3 cut(s) 14, 1313, 2217
PflMI CCANNNNNTGG 1 cut(s) 136
PleI GAGTC 4 cut(s) 832, 1744, 1870, 1976
PpsI GAGTC 4 cut(s) 832, 1744, 1870, 1976
PshBI ATTAAT 2 cut(s) 1638, 1761
PsiI TTATAA 1 cut(s) 996
Psp124BI GAGCTC 1 cut(s) 9
Psp1406I AACGTT 2 cut(s) 1051, 1621
Psp6I CCWGG 4 cut(s) 583, 688, 1042, 1899
PspGI CCWGG 4 cut(s) 583, 688, 1042, 1899
PspN4I GGNNCC 6 cut(s) 547, 727, 882, 918, 979, 1694
PspPI GGNCC 6 cut(s) 104, 978, 1165, 1270, 1654, 1693
PstI CTGCAG 2 cut(s) 752, 1135
PstNI CAGNNNCTG 1 cut(s) 136
PsuI RGATCY 1 cut(s) 1540
PvuII CAGCTG 1 cut(s) 136
RsaI GTAC 4 cut(s) 116, 482, 2241, 2325
RsaNI GTAC 4 cut(s) 115, 481, 2240, 2324
RseI CAYNNNNRTG 4 cut(s) 150, 2038, 2170, 2303
SacI GAGCTC 1 cut(s) 9
Sau3AI GATC 9 cut(s) 184, 208, 740, 766, 794, 824, 1262, 1528, 1540
Sau96I GGNCC 6 cut(s) 104, 978, 1165, 1270, 1654, 1693
SchI GAGTC 4 cut(s) 832, 1744, 1871, 1976
ScrFI CCNGG 5 cut(s) 585, 690, 1044, 1901, 2153
SduI GDGCHC 1 cut(s) 9
SfaNI GCATC 7 cut(s) 788, 852, 1339, 1457, 1588, 1668, 2240
SfcI CTRYAG 5 cut(s) 748, 1131, 1533, 2187, 2332
SgrAI CRCCGGYG 1 cut(s) 2118
SinI GGWCC 4 cut(s) 978, 1270, 1654, 1693
SmiMI CAYNNNNRTG 4 cut(s) 150, 2038, 2170, 2303
SmlI CTYRAG 5 cut(s) 521, 577, 873, 1424, 1868
SmoI CTYRAG 5 cut(s) 521, 577, 873, 1424, 1868
SphI GCATGC 2 cut(s) 943, 1324
SseBI AGGCCT 2 cut(s) 493, 2330
SspMI CTAG 4 cut(s) 929, 1737, 1806, 2252
SstI GAGCTC 1 cut(s) 9
StuI AGGCCT 2 cut(s) 493, 2330
StyD4I CCNGG 5 cut(s) 583, 688, 1042, 1899, 2151
StyI CCWWGG 2 cut(s) 622, 1657
TaaI ACNGT 7 cut(s) 114, 509, 1011, 1085, 1493, 1819, 2061
TaiI ACGT 3 cut(s) 952, 1054, 1624
TaqI TCGA 5 cut(s) 72, 360, 685, 1189, 1355
TatI WGTACW 1 cut(s) 114
TauI GCSGC 5 cut(s) 125, 164, 278, 868, 2231
TfiI GAWTC 3 cut(s) 14, 1313, 2217
TscAI CASTG 4 cut(s) 492, 1014, 1158, 2262
TseFI GTSAC 3 cut(s) 155, 1157, 1556
TseI GCWGC 6 cut(s) 133, 272, 278, 776, 1889, 2260
Tsp45I GTSAC 3 cut(s) 155, 1157, 1556
TspDTI ATGAA 7 cut(s) 387, 423, 1041, 1281, 1583, 1632, 1812
TspGWI ACGGA 3 cut(s) 381, 1211, 1285
TspRI CASTG 4 cut(s) 492, 1014, 1158, 2262
Van91I CCANNNNNTGG 1 cut(s) 136
Vha464I CTTAAG 3 cut(s) 577, 1424, 1868
VpaK11BI GGWCC 4 cut(s) 978, 1270, 1654, 1693
VspI ATTAAT 2 cut(s) 1638, 1761
XapI RAATTY 6 cut(s) 1028, 1240, 1372, 1683, 2156, 2247
XbaI TCTAGA 1 cut(s) 928
XceI RCATGY 3 cut(s) 943, 1324, 1344
XmnI GAANNNNTTC 1 cut(s) 1929
XspI CTAG 4 cut(s) 929, 1737, 1806, 2252
Zsp2I ATGCAT 2 cut(s) 1390, 1450
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.