Rorug05G0049600

zinc finger CCCH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000602
Physical Location & Seq
Reverse (-)
4349744 .. 4350609
866 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0049600.1

Sequence Viewer

Length: 435 bp
ATGAATATTGTGAGCTCCATGGGCATTATCATGGCCAACAAGCAGCATATGCCTCCCGCTCGCTTTGCTTTTGGTTTTGCTACAACTTTGACTGAGAGCCACTTCTCTGTTACTGCATTGATATCGAAGTTGAGCATGATTCCGGTGGTCTCTGTGATCGAGTGGATTAATGATTACAAGATGACGTCTGGTGCATTTGCTTTCATAATGCTCTTTTGCTCCCTAGCAGTATTCTGCAACATCAGTCGGTACCTCTGCATCGGAAGATTCTCAGCCGTGTCATTCCAGGTTTTATTCATTTTAGGCCACATGAAGACTGTCTGTGTCTTGACATTGGGGTGGCTTCTCTTTGATTCAGCGCTCACATTTAAGAACTTGATGGGAATGGCTCTTGCAGTTGTCGGCATTATAGTTTACAGTTGGGTTGGAGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-CCCH zf-CCCH_2

Protein Analysis

144

Amino Acids

15.84

Weight (kDa)

9.07

Isoelectric Point (pI)

34.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000602)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G48195 AT3G48440 AT5G63260 AT5G63260
fragaria_vesca FvH4_5g07100 FvH4_5g07100 FvH4_5g07100 FvH4_5g07100 FvH4_5g07100 FvH4_5g07100 FvH4_5g07100
malus_domestica MD06G1158800.v1.1 MD06G1159000.v1.1 MD06G1159200.v1.1 MD14G1165100.v1.1 MD14G1165300.v1.1 MD14G1165400.v1.1 MD14G1165500.v1.1
prunus_persica Prupe.5G158300_v2.0.a1 Prupe.5G158300_v2.0.a1 Prupe.5G158400_v2.0.a1 Prupe.5G158400_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158600_v2.0.a1 Prupe.5G158700_v2.0.a1 Prupe.5G158800_v2.0.a1 Prupe.5G158900_v2.0.a1 Prupe.5G159000_v2.0.a1 Prupe.5G159100_v2.0.a1 Prupe.5G159100_v2.0.a1
pyrus_communis pycom02g00910 pycom06g14200 pycom14g13760 pycom14g13790 pycom14g13800
rosa_chinensis RchiOBHm_Chr5g0019351 RchiOBHm_Chr5g0022771 RchiOBHm_Chr7g0191441 RchiOBHm_Chr7g0191531
rosa_laevigata RLG00000004449 RLG00000032440
rosa_multiflora Rmu_sc0001809.1_g000062 Rmu_sc0005292.1_g000027
rosa_roxburghii Rroxscaffold_1G00074260 Rroxscaffold_6G00390280 Rroxscaffold_7G00168660
rosa_rugosa Rorug05G0049600 Rorug05G0049700 Rorug05G0049800 Rorug06G0510400
rosa_samantha Rh5CG151400 Rh5DG140300 Rh7AG118400 Rh7BG120400 Rh7CG123200 Rh7DG121300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 188
Acc65I GGTACC 1 cut(s) 249
AccB1I GGYRCC 1 cut(s) 249
AccBSI CCGCTC 1 cut(s) 59
AciI CCGC 1 cut(s) 57
AcoI YGGCCR 1 cut(s) 33
AcyI GRCGYC 1 cut(s) 185
AfaI GTAC 1 cut(s) 251
AfeI AGCGCT 1 cut(s) 360
AjnI CCWGG 1 cut(s) 285
AluBI AGCT 1 cut(s) 15
AluI AGCT 1 cut(s) 15
Alw21I GWGCWC 1 cut(s) 17
Alw26I GTCTC 1 cut(s) 154
Aor51HI AGCGCT 1 cut(s) 360
AoxI GGCC 2 cut(s) 33, 304
ApeKI GCWGC 1 cut(s) 43
AseI ATTAAT 1 cut(s) 168
Asp718I GGTACC 1 cut(s) 249
AspLEI GCGC 1 cut(s) 361
BalI TGGCCA 1 cut(s) 35
BanI GGYRCC 1 cut(s) 249
BanII GRGCYC 1 cut(s) 17
BbsI GAAGAC 1 cut(s) 320
Bbv12I GWGCWC 1 cut(s) 17
BbvI GCAGC 1 cut(s) 55
BccI CCATC 1 cut(s) 373
BceAI ACGGC 1 cut(s) 260
BcgI CGANNNNNNTGC 2 cut(s) 105, 139
BciT130I CCWGG 1 cut(s) 287
BcoDI GTCTC 1 cut(s) 154
BfaI CTAG 1 cut(s) 224
BfoI RGCGCY 1 cut(s) 362
BisI GCNGC 1 cut(s) 44
BlsI GCNGC 1 cut(s) 45
Bme1390I CCNGG 1 cut(s) 287
BmiI GGNNCC 1 cut(s) 251
BmrFI CCNGG 1 cut(s) 287
BmsI GCATC 1 cut(s) 267
BpiI GAAGAC 1 cut(s) 320
BsaHI GRCGYC 1 cut(s) 185
BsaI GGTCTC 1 cut(s) 154
BsaJI CCNNGG 1 cut(s) 18
BsaWI WCCGGW 1 cut(s) 142
BseBI CCWGG 1 cut(s) 287
BseDI CCNNGG 1 cut(s) 18
BseMII CTCAG 2 cut(s) 84, 285
BseXI GCAGC 1 cut(s) 55
BshFI GGCC 2 cut(s) 35, 306
BshNI GGYRCC 1 cut(s) 249
BsiHKAI GWGCWC 1 cut(s) 17
BsiSI CCGG 1 cut(s) 143
BsmAI GTCTC 1 cut(s) 154
BsnI GGCC 2 cut(s) 35, 306
Bso31I GGTCTC 1 cut(s) 154
Bsp1286I GDGCHC 1 cut(s) 17
Bsp143I GATC 1 cut(s) 156
Bsp19I CCATGG 1 cut(s) 18
BspACI CCGC 1 cut(s) 57
BspANI GGCC 2 cut(s) 35, 306
BspCNI CTCAG 2 cut(s) 85, 284
BspLI GGNNCC 1 cut(s) 251
BspT107I GGYRCC 1 cut(s) 249
BspTNI GGTCTC 1 cut(s) 154
BsrBI CCGCTC 1 cut(s) 59
BssECI CCNNGG 1 cut(s) 18
BssMI GATC 1 cut(s) 156
BssNI GRCGYC 1 cut(s) 185
BssT1I CCWWGG 1 cut(s) 18
Bst2UI CCWGG 1 cut(s) 287
Bst4CI ACNGT 2 cut(s) 319, 419
BstACI GRCGYC 1 cut(s) 185
BstAPI GCANNNNNTGC 1 cut(s) 49
BstC8I GCNNGC 1 cut(s) 61
BstDEI CTNAG 2 cut(s) 93, 271
BstDSI CCRYGG 1 cut(s) 18
BstH2I RGCGCY 1 cut(s) 362
BstHHI GCGC 1 cut(s) 361
BstKTI GATC 1 cut(s) 159
BstMAI GTCTC 1 cut(s) 154
BstMBI GATC 1 cut(s) 156
BstMWI GCNNNNNNNGC 3 cut(s) 21, 49, 65
BstNI CCWGG 1 cut(s) 287
BstSCI CCNGG 1 cut(s) 285
BstV1I GCAGC 1 cut(s) 55
BstV2I GAAGAC 1 cut(s) 320
BsuRI GGCC 2 cut(s) 35, 306
BtgI CCRYGG 1 cut(s) 18
Cac8I GCNNGC 1 cut(s) 61
CfoI GCGC 1 cut(s) 361
Csp6I GTAC 1 cut(s) 250
CviAII CATG 4 cut(s) 19, 31, 136, 310
CviJI RGCY 8 cut(s) 15, 35, 99, 275, 306, 343, 389, 432
CviKI_1 RGCY 8 cut(s) 15, 35, 99, 275, 306, 343, 389, 432
CviQI GTAC 1 cut(s) 250
DdeI CTNAG 2 cut(s) 93, 271
DpnI GATC 1 cut(s) 158
DpnII GATC 1 cut(s) 156
EaeI YGGCCR 1 cut(s) 33
Ecl136II GAGCTC 1 cut(s) 15
Eco130I CCWWGG 1 cut(s) 18
Eco24I GRGCYC 1 cut(s) 17
Eco31I GGTCTC 1 cut(s) 154
Eco32I GATATC 1 cut(s) 123
Eco47III AGCGCT 1 cut(s) 360
Eco53kI GAGCTC 1 cut(s) 15
EcoICRI GAGCTC 1 cut(s) 15
EcoRII CCWGG 1 cut(s) 285
EcoRV GATATC 1 cut(s) 123
EcoT14I CCWWGG 1 cut(s) 18
EcoT38I GRGCYC 1 cut(s) 17
ErhI CCWWGG 1 cut(s) 18
FaeI CATG 4 cut(s) 22, 34, 139, 313
FaiI YATR 8 cut(s) 20, 32, 48, 50, 137, 206, 311, 410
FatI CATG 4 cut(s) 18, 30, 135, 309
FauI CCCGC 1 cut(s) 64
FauNDI CATATG 1 cut(s) 48
Fnu4HI GCNGC 1 cut(s) 44
FriOI GRGCYC 1 cut(s) 17
Fsp4HI GCNGC 1 cut(s) 44
FspBI CTAG 1 cut(s) 224
GlaI GCGC 1 cut(s) 360
GluI GCNGC 1 cut(s) 44
HaeII RGCGCY 1 cut(s) 362
HaeIII GGCC 2 cut(s) 35, 306
HapII CCGG 1 cut(s) 143
HhaI GCGC 1 cut(s) 361
Hin1I GRCGYC 1 cut(s) 185
Hin1II CATG 4 cut(s) 22, 34, 139, 313
Hin6I GCGC 1 cut(s) 359
HinP1I GCGC 1 cut(s) 359
HinfI GANTC 3 cut(s) 139, 267, 353
HpaII CCGG 1 cut(s) 143
Hpy166II GTNNAC 1 cut(s) 415
Hpy188I TCNGA 1 cut(s) 263
Hpy188III TCNNGA 1 cut(s) 328
Hpy8I GTNNAC 1 cut(s) 415
HpyCH4III ACNGT 2 cut(s) 319, 419
HpyCH4IV ACGT 1 cut(s) 185
HpyCH4V TGCA 5 cut(s) 116, 194, 237, 258, 395
HpyF10VI GCNNNNNNNGC 3 cut(s) 21, 49, 65
HpyF3I CTNAG 2 cut(s) 93, 271
HpySE526I ACGT 1 cut(s) 185
Hsp92I GRCGYC 1 cut(s) 185
Hsp92II CATG 4 cut(s) 22, 34, 139, 313
HspAI GCGC 1 cut(s) 359
KpnI GGTACC 1 cut(s) 253
Kzo9I GATC 1 cut(s) 156
LmnI GCTCC 2 cut(s) 20, 224
LpnPI CCDG 4 cut(s) 156, 174, 272, 299
Lsp1109I GCAGC 1 cut(s) 55
LweI GCATC 1 cut(s) 267
MaeI CTAG 1 cut(s) 224
MaeII ACGT 1 cut(s) 185
MaeIII GTNAC 1 cut(s) 109
MalI GATC 1 cut(s) 158
MbiI CCGCTC 1 cut(s) 59
MboI GATC 1 cut(s) 156
MboII GAAGA 2 cut(s) 276, 325
MhlI GDGCHC 1 cut(s) 17
MlsI TGGCCA 1 cut(s) 35
MluNI TGGCCA 1 cut(s) 35
MmeI TCCRAC 1 cut(s) 406
MnlI CCTC 3 cut(s) 63, 263, 422
Mox20I TGGCCA 1 cut(s) 35
MscI TGGCCA 1 cut(s) 35
MseI TTAA 2 cut(s) 168, 369
MslI CAYNNNNRTG 2 cut(s) 29, 337
Msp20I TGGCCA 1 cut(s) 35
MspI CCGG 1 cut(s) 143
MspR9I CCNGG 1 cut(s) 287
MvaI CCWGG 1 cut(s) 287
MwoI GCNNNNNNNGC 3 cut(s) 21, 49, 65
NcoI CCATGG 1 cut(s) 18
NdeI CATATG 1 cut(s) 48
NdeII GATC 1 cut(s) 156
NlaIII CATG 4 cut(s) 22, 34, 139, 313
NlaIV GGNNCC 1 cut(s) 251
PfeI GAWTC 3 cut(s) 139, 267, 353
PkrI GCNGC 1 cut(s) 45
PshBI ATTAAT 1 cut(s) 168
Psp124BI GAGCTC 1 cut(s) 17
Psp6I CCWGG 1 cut(s) 285
PspGI CCWGG 1 cut(s) 285
PspN4I GGNNCC 1 cut(s) 251
RsaI GTAC 1 cut(s) 251
RsaNI GTAC 1 cut(s) 250
RseI CAYNNNNRTG 2 cut(s) 29, 337
SacI GAGCTC 1 cut(s) 17
SaqAI TTAA 2 cut(s) 168, 369
SatI GCNGC 1 cut(s) 44
Sau3AI GATC 1 cut(s) 156
ScrFI CCNGG 1 cut(s) 287
SduI GDGCHC 1 cut(s) 17
SetI ASST 4 cut(s) 17, 188, 255, 291
SfaNI GCATC 1 cut(s) 267
SmiMI CAYNNNNRTG 2 cut(s) 29, 337
SsiI CCGC 1 cut(s) 57
SspI AATATT 1 cut(s) 7
SspMI CTAG 1 cut(s) 224
SstI GAGCTC 1 cut(s) 17
StyD4I CCNGG 1 cut(s) 285
StyI CCWWGG 1 cut(s) 18
TaaI ACNGT 2 cut(s) 319, 419
TaiI ACGT 1 cut(s) 188
TaqI TCGA 2 cut(s) 125, 159
TfiI GAWTC 3 cut(s) 139, 267, 353
Tru1I TTAA 2 cut(s) 168, 369
Tru9I TTAA 2 cut(s) 168, 369
TseI GCWGC 1 cut(s) 43
TspDTI ATGAA 4 cut(s) 17, 193, 286, 326
VspI ATTAAT 1 cut(s) 168
XspI CTAG 1 cut(s) 224
ZraI GACGTC 1 cut(s) 186
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.