MD06G1158800.v1.1

zinc finger CCCH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0000602
Physical Location & Seq
Reverse (-)
30046357 .. 30050216
3860 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1158800.v1.1.491

Sequence Viewer

Length: 837 bp
ATGATTGCAAGTTTGGATCCAATTGCAAGTTTAATCACCTTGTTAGAAGGAAAACCAACCAGAATGGATCTTTTCTGGGTTTTTCAAGTTTTTTGGTGCTGGTTAAGAATTATGGTTCTACTACTTGGTTGTGACTTGTGTTGTCTTTTGGAAGTATATTTGTTCAAGATTTGGGGTGCGATCTTAAGGATGGGTTTTGATGCTCTGGTTAGAGGCAGAGGAATACAAGTCCATTGGTTAGATTCAGAGGCTGGAAATAAAGAGGGTATTTGTACTGCTGAGGTCCATATAAGATACCATTATTTCCCATGGTTGGAACAGGGAACTTGCCGGAGAATATGTGCCATATGTTGCATATGTATACCCATGGTGGTGCCTAGGGAAAGGGTAAAGGATAAGGATGAGTCGGCAGAGAATCCAAGCCAGACGGAATGCAAGCCTGTTACAGGAGGATCTGATCCCCCATCTGGATTTGGCAATGATGGTCCTGCATCGTTACAAGTTGCATCACAATCAAAAGTGGCACCACGGCCATTGAATGAGGCTCCAGTTTACACGCCAATGATGATTCCACCACCTCAAGGGGTTTCTTCTCAAAATTCAGAATGGAATGGTTATCGGGCTCCAGCATATATACCAGAAAGAAGCATGCCTGCACGTCCACCATATATGATGAACAACTCAGTGACTGAGACCAACGTCTACAAACAATATCCACACCAGAATCAAGTTGAAGAGTTCCCAGCAAGACCCGGCCAACCTGATTGCAGTTATTTCTCAAGAACGGGAGATTGCAAGTTTAAATCTAATTGCAAATATCACCATCCGTCAATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-CCCH zf-CCCH_2

Protein Analysis

279

Amino Acids

31.4

Weight (kDa)

6.96

Isoelectric Point (pI)

46.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-CCCH PF00642 251 - 276 1.7e-06 Zinc finger C-x8-C-x5-C-x3-H type (and similar)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000602)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G48195 AT3G48440 AT5G63260 AT5G63260
fragaria_vesca FvH4_5g07100 FvH4_5g07100 FvH4_5g07100 FvH4_5g07100 FvH4_5g07100 FvH4_5g07100 FvH4_5g07100
malus_domestica MD06G1158800.v1.1 MD06G1159000.v1.1 MD06G1159200.v1.1 MD14G1165100.v1.1 MD14G1165300.v1.1 MD14G1165400.v1.1 MD14G1165500.v1.1
prunus_persica Prupe.5G158300_v2.0.a1 Prupe.5G158300_v2.0.a1 Prupe.5G158400_v2.0.a1 Prupe.5G158400_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158600_v2.0.a1 Prupe.5G158700_v2.0.a1 Prupe.5G158800_v2.0.a1 Prupe.5G158900_v2.0.a1 Prupe.5G159000_v2.0.a1 Prupe.5G159100_v2.0.a1 Prupe.5G159100_v2.0.a1
pyrus_communis pycom02g00910 pycom06g14200 pycom14g13760 pycom14g13790 pycom14g13800
rosa_chinensis RchiOBHm_Chr5g0019351 RchiOBHm_Chr5g0022771 RchiOBHm_Chr7g0191441 RchiOBHm_Chr7g0191531
rosa_laevigata RLG00000004449 RLG00000032440
rosa_multiflora Rmu_sc0001809.1_g000062 Rmu_sc0005292.1_g000027
rosa_roxburghii Rroxscaffold_1G00074260 Rroxscaffold_6G00390280 Rroxscaffold_7G00168660
rosa_rugosa Rorug05G0049600 Rorug05G0049700 Rorug05G0049800 Rorug06G0510400
rosa_samantha Rh5CG151400 Rh5DG140300 Rh7AG118400 Rh7BG120400 Rh7CG123200 Rh7DG121300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 373, 523
AccI GTMKAC 2 cut(s) 361, 702
AclWI GGATC 5 cut(s) 11, 24, 75, 452, 460
AcoI YGGCCR 2 cut(s) 530, 754
AcsI RAATTY 1 cut(s) 598
AfaI GTAC 1 cut(s) 274
AfiI CCNNNNNNNGG 4 cut(s) 313, 446, 467, 581
AflII CTTAAG 1 cut(s) 184
AgsI TTSAA 4 cut(s) 86, 166, 538, 734
AjiI CACGTC 1 cut(s) 659
Alw26I GTCTC 1 cut(s) 686
AlwI GGATC 5 cut(s) 11, 24, 75, 452, 460
AlwNI CAGNNNCTG 2 cut(s) 251, 689
AoxI GGCC 2 cut(s) 530, 754
ApoI RAATTY 1 cut(s) 598
AspA2I CCTAGG 1 cut(s) 377
AspS9I GGNCC 2 cut(s) 283, 485
AsuC2I CCSGG 1 cut(s) 753
AsuHPI GGTGA 2 cut(s) 28, 812
AvaII GGWCC 2 cut(s) 283, 485
AvrII CCTAGG 1 cut(s) 377
BamHI GGATCC 1 cut(s) 16
BanI GGYRCC 2 cut(s) 373, 523
BanII GRGCYC 1 cut(s) 625
BbvCI CCTCAGC 1 cut(s) 279
BccI CCATC 4 cut(s) 184, 472, 476, 831
BceAI ACGGC 1 cut(s) 545
BcnI CCSGG 1 cut(s) 753
BcoDI GTCTC 1 cut(s) 686
BfaI CTAG 1 cut(s) 378
BfrI CTTAAG 1 cut(s) 184
BlnI CCTAGG 1 cut(s) 377
Bme1390I CCNGG 1 cut(s) 753
Bme18I GGWCC 2 cut(s) 283, 485
BmgBI CACGTC 1 cut(s) 659
BmgT120I GGNCC 2 cut(s) 283, 485
BmiI GGNNCC 5 cut(s) 18, 375, 525, 546, 624
BmrFI CCNGG 1 cut(s) 753
BmsI GCATC 3 cut(s) 190, 500, 515
BoxI GACNNNNGTC 1 cut(s) 698
BpmI CTGGAG 2 cut(s) 531, 609
Bpu10I CCTNAGC 1 cut(s) 279
BpuEI CTTGAG 2 cut(s) 564, 763
BpuMI CCSGG 1 cut(s) 753
BsaI GGTCTC 1 cut(s) 686
BsaJI CCNNGG 4 cut(s) 308, 366, 377, 527
BsaXI ACNNNNNCTCC 2 cut(s) 325, 355
Bsc4I CCNNNNNNNGG 4 cut(s) 313, 446, 467, 581
Bse1I ACTGG 1 cut(s) 548
Bse3DI GCAATG 1 cut(s) 484
BseDI CCNNGG 4 cut(s) 308, 366, 377, 527
BseGI GGATG 3 cut(s) 195, 406, 823
BseLI CCNNNNNNNGG 4 cut(s) 313, 446, 467, 581
BseMI GCAATG 1 cut(s) 484
BseMII CTCAG 3 cut(s) 270, 681, 696
BseNI ACTGG 1 cut(s) 548
BseYI CCCAGC 1 cut(s) 742
BsgI GTGCAG 1 cut(s) 639
BshFI GGCC 2 cut(s) 532, 756
BshNI GGYRCC 2 cut(s) 373, 523
BsiSI CCGG 2 cut(s) 331, 753
BslI CCNNNNNNNGG 4 cut(s) 313, 446, 467, 581
BsmAI GTCTC 1 cut(s) 686
BsmI GAATGC 1 cut(s) 437
BsnI GGCC 2 cut(s) 532, 756
Bso31I GGTCTC 1 cut(s) 686
Bsp1286I GDGCHC 1 cut(s) 625
Bsp143I GATC 5 cut(s) 16, 67, 180, 452, 457
Bsp19I CCATGG 2 cut(s) 308, 366
BspANI GGCC 2 cut(s) 532, 756
BspCNI CTCAG 3 cut(s) 271, 682, 695
BspLI GGNNCC 5 cut(s) 18, 375, 525, 546, 624
BspPI GGATC 5 cut(s) 11, 24, 75, 452, 460
BspT107I GGYRCC 2 cut(s) 373, 523
BspTI CTTAAG 1 cut(s) 184
BspTNI GGTCTC 1 cut(s) 686
BsrDI GCAATG 1 cut(s) 484
BsrI ACTGG 1 cut(s) 548
BssECI CCNNGG 4 cut(s) 308, 366, 377, 527
BssMI GATC 5 cut(s) 16, 67, 180, 452, 457
BssNAI GTATAC 1 cut(s) 362
BssT1I CCWWGG 3 cut(s) 308, 366, 377
Bst1107I GTATAC 1 cut(s) 362
Bst6I CTCTTC 1 cut(s) 729
BstAFI CTTAAG 1 cut(s) 184
BstC8I GCNNGC 3 cut(s) 437, 650, 654
BstDEI CTNAG 3 cut(s) 279, 682, 690
BstDSI CCRYGG 3 cut(s) 308, 366, 527
BstENI CCTNNNNNAGG 1 cut(s) 444
BstF5I GGATG 3 cut(s) 195, 406, 823
BstKTI GATC 5 cut(s) 19, 70, 183, 455, 460
BstMAI GTCTC 1 cut(s) 686
BstMBI GATC 5 cut(s) 16, 67, 180, 452, 457
BstNSI RCATGY 1 cut(s) 652
BstPAI GACNNNNGTC 1 cut(s) 698
BstSCI CCNGG 1 cut(s) 751
BstX2I RGATCY 3 cut(s) 16, 67, 452
BstYI RGATCY 3 cut(s) 16, 67, 452
BstZ17I GTATAC 1 cut(s) 362
BsuRI GGCC 2 cut(s) 532, 756
BtgI CCRYGG 3 cut(s) 308, 366, 527
BtrI CACGTC 1 cut(s) 659
BtsCI GGATG 3 cut(s) 195, 406, 823
BtsIMutI CAGTG 1 cut(s) 690
Cac8I GCNNGC 3 cut(s) 437, 650, 654
CaiI CAGNNNCTG 2 cut(s) 251, 689
Cfr13I GGNCC 2 cut(s) 283, 485
Csp6I GTAC 1 cut(s) 273
CspCI CAANNNNNGTGG 2 cut(s) 516, 551
CviAII CATG 3 cut(s) 309, 367, 649
CviJI RGCY 7 cut(s) 251, 423, 439, 532, 545, 623, 756
CviKI_1 RGCY 7 cut(s) 251, 423, 439, 532, 545, 623, 756
CviQI GTAC 1 cut(s) 273
DdeI CTNAG 3 cut(s) 279, 682, 690
DpnI GATC 5 cut(s) 18, 69, 182, 454, 459
DpnII GATC 5 cut(s) 16, 67, 180, 452, 457
DraI TTTAAA 1 cut(s) 802
EaeI YGGCCR 2 cut(s) 530, 754
Eam1104I CTCTTC 1 cut(s) 729
EarI CTCTTC 1 cut(s) 729
Eco130I CCWWGG 3 cut(s) 308, 366, 377
Eco24I GRGCYC 1 cut(s) 625
Eco31I GGTCTC 1 cut(s) 686
Eco47I GGWCC 2 cut(s) 283, 485
EcoNI CCTNNNNNAGG 1 cut(s) 444
EcoT14I CCWWGG 3 cut(s) 308, 366, 377
EcoT38I GRGCYC 1 cut(s) 625
ErhI CCWWGG 3 cut(s) 308, 366, 377
FaeI CATG 3 cut(s) 312, 370, 652
FatI CATG 3 cut(s) 308, 366, 648
FauNDI CATATG 2 cut(s) 347, 356
FblI GTMKAC 2 cut(s) 361, 702
FokI GGATG 3 cut(s) 202, 413, 810
FriOI GRGCYC 1 cut(s) 625
FspBI CTAG 1 cut(s) 378
GsaI CCCAGC 1 cut(s) 746
GsuI CTGGAG 2 cut(s) 531, 609
HaeIII GGCC 2 cut(s) 532, 756
HapII CCGG 2 cut(s) 331, 753
Hin1II CATG 3 cut(s) 312, 370, 652
HinfI GANTC 5 cut(s) 242, 404, 415, 568, 724
HpaII CCGG 2 cut(s) 331, 753
HphI GGTGA 2 cut(s) 28, 812
Hpy166II GTNNAC 4 cut(s) 362, 553, 662, 703
Hpy188I TCNGA 3 cut(s) 247, 457, 604
Hpy188III TCNNGA 3 cut(s) 166, 468, 780
Hpy8I GTNNAC 4 cut(s) 362, 553, 662, 703
HpyAV CCTTC 1 cut(s) 41
HpyCH4IV ACGT 2 cut(s) 658, 699
HpyF3I CTNAG 3 cut(s) 279, 682, 690
HpySE526I ACGT 2 cut(s) 658, 699
Hsp92II CATG 3 cut(s) 312, 370, 652
Kzo9I GATC 5 cut(s) 16, 67, 180, 452, 457
LmnI GCTCC 2 cut(s) 550, 628
LweI GCATC 3 cut(s) 190, 500, 515
MaeI CTAG 1 cut(s) 378
MaeII ACGT 2 cut(s) 658, 699
MaeIII GTNAC 4 cut(s) 131, 442, 495, 685
MalI GATC 5 cut(s) 18, 69, 182, 454, 459
MboI GATC 5 cut(s) 16, 67, 180, 452, 457
MboII GAAGA 2 cut(s) 582, 746
MfeI CAATTG 1 cut(s) 21
MflI RGATCY 3 cut(s) 16, 67, 452
MhlI GDGCHC 1 cut(s) 625
MluCI AATT 5 cut(s) 21, 108, 598, 808, 831
MlyI GAGTC 1 cut(s) 413
MmeI TCCRAC 1 cut(s) 294
MnlI CCTC 8 cut(s) 206, 212, 241, 256, 274, 443, 535, 588
MseI TTAA 4 cut(s) 32, 104, 185, 801
MslI CAYNNNNRTG 2 cut(s) 371, 560
MspCI CTTAAG 1 cut(s) 184
MspI CCGG 2 cut(s) 331, 753
MspR9I CCNGG 1 cut(s) 753
MunI CAATTG 1 cut(s) 21
Mva1269I GAATGC 1 cut(s) 437
NciI CCSGG 1 cut(s) 753
NcoI CCATGG 2 cut(s) 308, 366
NdeI CATATG 2 cut(s) 347, 356
NdeII GATC 5 cut(s) 16, 67, 180, 452, 457
NlaIII CATG 3 cut(s) 312, 370, 652
NlaIV GGNNCC 5 cut(s) 18, 375, 525, 546, 624
NmuCI GTSAC 2 cut(s) 131, 685
NspI RCATGY 1 cut(s) 652
PaeI GCATGC 1 cut(s) 652
PctI GAATGC 1 cut(s) 437
PfeI GAWTC 4 cut(s) 242, 415, 568, 724
PleI GAGTC 1 cut(s) 412
PpsI GAGTC 1 cut(s) 412
PshAI GACNNNNGTC 1 cut(s) 698
PspFI CCCAGC 1 cut(s) 742
PspN4I GGNNCC 5 cut(s) 18, 375, 525, 546, 624
PspPI GGNCC 2 cut(s) 283, 485
PstNI CAGNNNCTG 2 cut(s) 251, 689
PsuI RGATCY 3 cut(s) 16, 67, 452
RsaI GTAC 1 cut(s) 274
RsaNI GTAC 1 cut(s) 273
RseI CAYNNNNRTG 2 cut(s) 371, 560
SaqAI TTAA 4 cut(s) 32, 104, 185, 801
Sau3AI GATC 5 cut(s) 16, 67, 180, 452, 457
Sau96I GGNCC 2 cut(s) 283, 485
SchI GAGTC 1 cut(s) 413
ScrFI CCNGG 1 cut(s) 753
SduI GDGCHC 1 cut(s) 625
SetI ASST 6 cut(s) 41, 285, 580, 661, 702, 763
SfaNI GCATC 3 cut(s) 190, 500, 515
SinI GGWCC 2 cut(s) 283, 485
SmiMI CAYNNNNRTG 2 cut(s) 371, 560
SmlI CTYRAG 3 cut(s) 184, 579, 778
SmoI CTYRAG 3 cut(s) 184, 579, 778
SphI GCATGC 1 cut(s) 652
Sse9I AATT 5 cut(s) 21, 108, 598, 808, 831
SspMI CTAG 1 cut(s) 378
StyD4I CCNGG 1 cut(s) 751
StyI CCWWGG 3 cut(s) 308, 366, 377
TaiI ACGT 2 cut(s) 661, 702
TasI AATT 5 cut(s) 21, 108, 598, 808, 831
TatI WGTACW 1 cut(s) 272
TfiI GAWTC 4 cut(s) 242, 415, 568, 724
Tru1I TTAA 4 cut(s) 32, 104, 185, 801
Tru9I TTAA 4 cut(s) 32, 104, 185, 801
TscAI CASTG 1 cut(s) 690
TseFI GTSAC 2 cut(s) 131, 685
Tsp45I GTSAC 2 cut(s) 131, 685
TspDTI ATGAA 1 cut(s) 689
TspGWI ACGGA 2 cut(s) 443, 816
TspRI CASTG 1 cut(s) 690
Vha464I CTTAAG 1 cut(s) 184
VpaK11BI GGWCC 2 cut(s) 283, 485
XagI CCTNNNNNAGG 1 cut(s) 444
XapI RAATTY 1 cut(s) 598
XceI RCATGY 1 cut(s) 652
XmaJI CCTAGG 1 cut(s) 377
XmiI GTMKAC 2 cut(s) 361, 702
XspI CTAG 1 cut(s) 378
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.