Prupe.5G158700_v2.0.a1

3'-UTR-mediated mRNA destabilization

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0000602
Physical Location & Seq
Reverse (-)
14062537 .. 14065599
3063 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G158700.1

Sequence Viewer

Length: 2082 bp
ATGTTGACAGCTCCCATCGGCCTCCCAAATCCCGACGTTCCGCCAAATGCTGAACTCTCTGATCTCGATCTTGCCATCCTTGAAGAGATTCGGAAACTTGATGCCCGCCTTGATAAAATTCGGAAACTCGACCCTGCCCTGCTTGATAAGATTCGAAAATTCGACCCAGACGTCCATGATGAGCTTTATAACAATCAGGTGTCCAAGGACAAGATGAAGGAAAGGGACGGGTTGGCAGCAGAGAAGCCAGGCCAGACCGAATGCAAGGATTATTCCAGGTCAGGAGGACGTAAATATGAAAAAGCTTGTAGTTTAAATCCCGGAAGAGGGGAACCTTCCGTAGCTCCAATTCCAGAATGTAACTTTCTGGGCCTGCCAATTCGACCGGGGGAGAAAGACTGTTCCTTCTATATGCGAAATGCCTCCTGCATGTTTGGTACAAACTGCAGGTTTAATCACCCTGATCCTACAGCTGCAAGAGAATCTGAACCCCCATCTGGATGTGGTAATGGCGGATCCGCATCATTACAAGGTGCATCGTCATCAACAGCAGCACCATGGTCTGCACCAAGATCATTGAATGATGCTCCGCTTTATGTGCCAATGGTGAGTCCGCATGTTCAGATAGGAAGCTGGGGTAATGCAGATGGGGTTTGGGCCCAATCAGAGGCAGGAAACAAAGATGAAGCAAGTGGCTGGACAAAACCTGCTTTTATTAATGAGAATCAGAATGACAGTTGGAAGAAACCAAGTGGTGTAGATGACAATAGAAGAGCTTCCTGGGGTAAATCAGATGGAGGTTCTACTTGGACTAAACAAGATGGAGATCCTACATGGAACAAACAAGGTGAAGGTTCTACTTGGAATAAACAAGATGGCAGTTCTGCTTGGAATAAACCAGCAGGAGATTCTTATTGGAGTAAACAAGCTGGATGGTCTTCATGGGGTAAACAAGCTGATGTAACAGCAGGACATGAGTCTGGCGGAGTGGGGAATCAAGATAATGGTTGGAAGAGGGCAAGTTCTTTTGGTGGCAGTCAATCAATGGATGGTGTGAATGGAGACCAACCTGAGGATTTCAATAATAATCGAAGTGGTGGGAATTGGAGAGGTGGTTCAGGTAGAGGAAATTCAGACGGAGGAGGTTTTAGAGGTGGACGGGGTTTTGTAGGTAGAGGTGGTGATAGAGAGGAGGATAGAGGGGGTTTTGGACGTAGATGGGGTTTTGGTGGTAGAGGCGGAGACAGAGGGAGCTTTGGTGGTAGAGGTAGATCAGACAAAGGAGGGTTTGGTGGTAGAGGCTACGGAGGAAGAGGCCGTGGGAGGTATCAAAGTGGTGGTTGGAGCAATAGAAATGAATCTATTGATAATAACTCATCAGGCTGGAGCAAAGGGGCAGACGGTGCTGGCGAGGGATGGAAAAGGGACAAAGGTGGAGGAAGTTGGAACCAAGGAGGTGGCAGTAAGAACGATTGGCAGGGTAGGAACTCTAGCGGATGGAGTAGCCAGAGCTCCGGTTGGAACCAGTCTGATGTGACTAAAGGAATTGGTGGTTCGGGATCAGGTTGGAATCAGACAGTTGAGGCTAAATATACTGCTGGCACTCAGGACAAGGGAACAGGTTCTCATAATGAAGTGGGCACAAGCTGGGGAAACAATTGGAAATCATCAGATGCTTCTAATGGGGACCAATCGTCTAGGTGGAAACAATCGACTGCAGCCAAAGAAGTCAAAGGAAACACTGATCAAGACGGCGGCTGGAACAAGGGACCGAGCTCAAACGCACAAGCTGGGGGCTGGGGCAACCAGGGTTCAGGTTGGAACAAAGGAACAGGTTCAGGATTTGGAGGCGGTACCGGAGAGCAACCAAGTGCTGCTGTTGGAGGTCAATCATCTGACTGGAAGCAATCAAGTGCTGCAAGCGGGGGTCAATCCTCTAGTTGGAATCAATCTGGTGAGGCAAAACAAGGAACTGAAGAAGGTGCAAAACTGACTAATTCATGGGGCAAAGCAGCTCCACAATATCTACCAGAAAGAATCTTGCCTGCAACTCGCCTATGTTATGAACCACTCAGTGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04218 map04218
Pfam Domains
Protein Families
zf-CCCH

Protein Analysis

694

Amino Acids

73.14

Weight (kDa)

8.23

Isoelectric Point (pI)

48.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000602)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G48195 AT3G48440 AT5G63260 AT5G63260
fragaria_vesca FvH4_5g07100 FvH4_5g07100 FvH4_5g07100 FvH4_5g07100 FvH4_5g07100 FvH4_5g07100 FvH4_5g07100
malus_domestica MD06G1158800.v1.1 MD06G1159000.v1.1 MD06G1159200.v1.1 MD14G1165100.v1.1 MD14G1165300.v1.1 MD14G1165400.v1.1 MD14G1165500.v1.1
prunus_persica Prupe.5G158300_v2.0.a1 Prupe.5G158300_v2.0.a1 Prupe.5G158400_v2.0.a1 Prupe.5G158400_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158600_v2.0.a1 Prupe.5G158700_v2.0.a1 Prupe.5G158800_v2.0.a1 Prupe.5G158900_v2.0.a1 Prupe.5G159000_v2.0.a1 Prupe.5G159100_v2.0.a1 Prupe.5G159100_v2.0.a1
pyrus_communis pycom02g00910 pycom06g14200 pycom14g13760 pycom14g13790 pycom14g13800
rosa_chinensis RchiOBHm_Chr5g0019351 RchiOBHm_Chr5g0022771 RchiOBHm_Chr7g0191441 RchiOBHm_Chr7g0191531
rosa_laevigata RLG00000004449 RLG00000032440
rosa_multiflora Rmu_sc0001809.1_g000062 Rmu_sc0005292.1_g000027
rosa_roxburghii Rroxscaffold_1G00074260 Rroxscaffold_6G00390280 Rroxscaffold_7G00168660
rosa_rugosa Rorug05G0049600 Rorug05G0049700 Rorug05G0049800 Rorug06G0510400
rosa_samantha Rh5CG151400 Rh5DG140300 Rh7AG118400 Rh7BG120400 Rh7CG123200 Rh7DG121300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 189
AasI GACNNNNNNGTC 1 cut(s) 170
AatII GACGTC 1 cut(s) 174
Acc36I ACCTGC 2 cut(s) 438, 715
Acc65I GGTACC 1 cut(s) 1853
AccB1I GGYRCC 1 cut(s) 1853
AclWI GGATC 5 cut(s) 458, 510, 523, 821, 1567
AcsI RAATTY 3 cut(s) 117, 158, 1129
AcuI CTGAAG 1 cut(s) 1995
AcyI GRCGYC 1 cut(s) 171
AdeI CACNNNGTG 1 cut(s) 2075
AfaI GTAC 2 cut(s) 439, 1855
AfiI CCNNNNNNNGG 6 cut(s) 326, 327, 497, 667, 1072, 1941
AgsI TTSAA 3 cut(s) 83, 580, 1081
AhdI GACNNNNNGTC 1 cut(s) 1693
AjnI CCWGG 4 cut(s) 247, 275, 779, 1806
AloI GAACNNNNNNTCC 2 cut(s) 1099, 1131
Alw21I GWGCWC 2 cut(s) 1514, 1778
Alw26I GTCTC 2 cut(s) 1056, 1236
AlwI GGATC 5 cut(s) 458, 510, 523, 821, 1567
AlwNI CAGNNNCTG 1 cut(s) 2079
AoxI GGCC 5 cut(s) 19, 250, 370, 657, 1315
ApaI GGGCCC 1 cut(s) 661
ApeKI GCWGC 7 cut(s) 236, 473, 551, 1718, 1874, 1916, 2012
ApoI RAATTY 3 cut(s) 117, 158, 1129
AseI ATTAAT 1 cut(s) 717
Asp700I GAANNNNTTC 4 cut(s) 87, 775, 1621, 1834
Asp718I GGTACC 1 cut(s) 1853
AspS9I GGNCC 5 cut(s) 370, 657, 658, 1687, 1769
AsuC2I CCSGG 2 cut(s) 321, 387
AsuHPI GGTGA 5 cut(s) 449, 619, 860, 1193, 1967
AsuII TTCGAA 1 cut(s) 154
AvaII GGWCC 2 cut(s) 1687, 1769
AxyI CCTNAGG 1 cut(s) 1071
BaeGI GKGCMC 2 cut(s) 661, 1643
BamHI GGATCC 1 cut(s) 515
BanI GGYRCC 1 cut(s) 1853
BanII GRGCYC 3 cut(s) 661, 1514, 1778
BbsI GAAGAC 1 cut(s) 930
Bbv12I GWGCWC 2 cut(s) 1514, 1778
BbvI GCAGC 7 cut(s) 248, 460, 563, 1730, 1861, 1903, 2024
BceAI ACGGC 2 cut(s) 1302, 1768
BciT130I CCWGG 4 cut(s) 249, 277, 781, 1808
BclI TGATCA 1 cut(s) 1744
BcnI CCSGG 2 cut(s) 321, 387
BcoDI GTCTC 2 cut(s) 1056, 1236
BfaI CTAG 3 cut(s) 1491, 1698, 1938
BfmI CTRYAG 3 cut(s) 445, 468, 1716
BfuAI ACCTGC 2 cut(s) 438, 715
BisI GCNGC 8 cut(s) 237, 474, 552, 1719, 1756, 1875, 1917, 2013
BlsI GCNGC 8 cut(s) 238, 475, 553, 1720, 1757, 1876, 1918, 2014
Bme1390I CCNGG 6 cut(s) 249, 277, 321, 387, 781, 1808
Bme18I GGWCC 2 cut(s) 1687, 1769
BmeRI GACNNNNNGTC 1 cut(s) 1693
BmgT120I GGNCC 5 cut(s) 370, 657, 658, 1687, 1769
BmiI GGNNCC 8 cut(s) 333, 517, 659, 1448, 1523, 1688, 1770, 1855
BmrFI CCNGG 6 cut(s) 249, 277, 321, 387, 781, 1808
BmsI GCATC 5 cut(s) 91, 530, 545, 574, 1663
BoxI GACNNNNGTC 1 cut(s) 976
BpiI GAAGAC 1 cut(s) 930
BpmI CTGGAG 1 cut(s) 1405
Bpu14I TTCGAA 1 cut(s) 154
BpuMI CCSGG 2 cut(s) 321, 387
BsaBI GATNNNNATC 3 cut(s) 66, 520, 825
BsaHI GRCGYC 1 cut(s) 171
BsaI GGTCTC 1 cut(s) 1056
BsaJI CCNNGG 7 cut(s) 204, 386, 557, 780, 1318, 1450, 1807
BsaWI WCCGGW 2 cut(s) 1514, 1856
BsaXI ACNNNNNCTCC 4 cut(s) 1099, 1129, 1243, 1273
Bsc4I CCNNNNNNNGG 6 cut(s) 326, 327, 497, 667, 1072, 1941
Bse1I ACTGG 2 cut(s) 1525, 1904
Bse21I CCTNAGG 1 cut(s) 1071
Bse8I GATNNNNATC 3 cut(s) 66, 520, 825
BseBI CCWGG 4 cut(s) 249, 277, 781, 1808
BseDI CCNNGG 7 cut(s) 204, 386, 557, 780, 1318, 1450, 1807
BseGI GGATG 6 cut(s) 75, 506, 938, 1054, 1421, 1502
BseJI GATNNNNATC 3 cut(s) 66, 520, 825
BseLI CCNNNNNNNGG 6 cut(s) 326, 327, 497, 667, 1072, 1941
BseMII CTCAG 2 cut(s) 1062, 1619
BseNI ACTGG 2 cut(s) 1525, 1904
BseRI GAGGAG 2 cut(s) 1155, 1205
BseSI GKGCMC 2 cut(s) 661, 1643
BseXI GCAGC 7 cut(s) 248, 460, 563, 1730, 1861, 1903, 2024
BseYI CCCAGC 4 cut(s) 633, 1647, 1790, 1797
BsgI GTGCAG 1 cut(s) 549
Bsh1285I CGRYCG 1 cut(s) 386
BshFI GGCC 5 cut(s) 21, 252, 372, 659, 1317
BshNI GGYRCC 1 cut(s) 1853
BsiEI CGRYCG 1 cut(s) 386
BsiHKAI GWGCWC 2 cut(s) 1514, 1778
BsiSI CCGG 4 cut(s) 321, 386, 1515, 1857
BslFI GGGAC 4 cut(s) 239, 1439, 1700, 1782
BslI CCNNNNNNNGG 6 cut(s) 326, 327, 497, 667, 1072, 1941
BsmAI GTCTC 2 cut(s) 1056, 1236
BsmFI GGGAC 4 cut(s) 239, 1439, 1700, 1782
BsmI GAATGC 1 cut(s) 266
BsnI GGCC 5 cut(s) 21, 252, 372, 659, 1317
Bso31I GGTCTC 1 cut(s) 1056
Bsp119I TTCGAA 1 cut(s) 154
Bsp120I GGGCCC 1 cut(s) 657
Bsp1286I GDGCHC 4 cut(s) 661, 1514, 1643, 1778
Bsp143I GATC 9 cut(s) 61, 67, 463, 515, 572, 826, 1271, 1559, 1744
Bsp19I CCATGG 1 cut(s) 557
BspANI GGCC 5 cut(s) 21, 252, 372, 659, 1317
BspCNI CTCAG 2 cut(s) 1063, 1618
BspLI GGNNCC 8 cut(s) 333, 517, 659, 1448, 1523, 1688, 1770, 1855
BspMAI CTGCAG 2 cut(s) 449, 1720
BspMI ACCTGC 2 cut(s) 438, 715
BspPI GGATC 5 cut(s) 458, 510, 523, 821, 1567
BspQI GCTCTTC 1 cut(s) 766
BspT104I TTCGAA 1 cut(s) 154
BspT107I GGYRCC 1 cut(s) 1853
BspTNI GGTCTC 1 cut(s) 1056
BsrI ACTGG 2 cut(s) 1525, 1904
BssECI CCNNGG 7 cut(s) 204, 386, 557, 780, 1318, 1450, 1807
BssMI GATC 9 cut(s) 61, 67, 463, 515, 572, 826, 1271, 1559, 1744
BssNI GRCGYC 1 cut(s) 171
BssT1I CCWWGG 3 cut(s) 204, 557, 1450
Bst2UI CCWGG 4 cut(s) 249, 277, 781, 1808
Bst4CI ACNGT 4 cut(s) 401, 737, 1403, 1579
Bst6I CTCTTC 5 cut(s) 78, 319, 766, 1007, 1306
BstACI GRCGYC 1 cut(s) 171
BstAPI GCANNNNNTGC 1 cut(s) 1403
BstBI TTCGAA 1 cut(s) 154
BstC8I GCNNGC 6 cut(s) 106, 374, 1408, 1600, 1921, 2046
BstDEI CTNAG 3 cut(s) 1071, 1605, 2072
BstDSI CCRYGG 2 cut(s) 557, 1318
BstF5I GGATG 6 cut(s) 75, 506, 938, 1054, 1421, 1502
BstKTI GATC 9 cut(s) 64, 70, 466, 518, 575, 829, 1274, 1562, 1747
BstMAI GTCTC 2 cut(s) 1056, 1236
BstMBI GATC 9 cut(s) 61, 67, 463, 515, 572, 826, 1271, 1559, 1744
BstMCI CGRYCG 1 cut(s) 386
BstMWI GCNNNNNNNGC 2 cut(s) 598, 1403
BstNI CCWGG 4 cut(s) 249, 277, 781, 1808
BstNSI RCATGY 2 cut(s) 433, 620
BstPAI GACNNNNGTC 1 cut(s) 976
BstSCI CCNGG 6 cut(s) 247, 275, 319, 385, 779, 1806
BstSFI CTRYAG 3 cut(s) 445, 468, 1716
BstSLI GKGCMC 2 cut(s) 661, 1643
BstV1I GCAGC 7 cut(s) 248, 460, 563, 1730, 1861, 1903, 2024
BstV2I GAAGAC 1 cut(s) 930
BstX2I RGATCY 2 cut(s) 515, 826
BstXI CCANNNNNNTGG 1 cut(s) 1457
BstYI RGATCY 2 cut(s) 515, 826
Bsu36I CCTNAGG 1 cut(s) 1071
BsuRI GGCC 5 cut(s) 21, 252, 372, 659, 1317
BtgI CCRYGG 2 cut(s) 557, 1318
BtsCI GGATG 6 cut(s) 75, 506, 938, 1054, 1421, 1502
BtsIMutI CAGTG 2 cut(s) 1740, 2080
BveI ACCTGC 2 cut(s) 438, 715
Cac8I GCNNGC 6 cut(s) 106, 374, 1408, 1600, 1921, 2046
CaiI CAGNNNCTG 1 cut(s) 2079
Cfr13I GGNCC 5 cut(s) 370, 657, 658, 1687, 1769
Csp6I GTAC 2 cut(s) 438, 1854
CviAII CATG 8 cut(s) 176, 430, 558, 617, 834, 942, 974, 2001
CviQI GTAC 2 cut(s) 438, 1854
DdeI CTNAG 3 cut(s) 1071, 1605, 2072
DpnI GATC 9 cut(s) 63, 69, 465, 517, 574, 828, 1273, 1561, 1746
DpnII GATC 9 cut(s) 61, 67, 463, 515, 572, 826, 1271, 1559, 1744
DraI TTTAAA 1 cut(s) 315
DraIII CACNNNGTG 1 cut(s) 2075
DrdI GACNNNNNNGTC 1 cut(s) 170
DriI GACNNNNNGTC 1 cut(s) 1693
DseDI GACNNNNNNGTC 1 cut(s) 170
Eam1104I CTCTTC 5 cut(s) 78, 319, 766, 1007, 1306
Eam1105I GACNNNNNGTC 1 cut(s) 1693
EarI CTCTTC 5 cut(s) 78, 319, 766, 1007, 1306
EciI GGCGGA 4 cut(s) 30, 528, 999, 1254
Ecl136II GAGCTC 2 cut(s) 1512, 1776
Eco130I CCWWGG 3 cut(s) 204, 557, 1450
Eco24I GRGCYC 3 cut(s) 661, 1514, 1778
Eco31I GGTCTC 1 cut(s) 1056
Eco47I GGWCC 2 cut(s) 1687, 1769
Eco53kI GAGCTC 2 cut(s) 1512, 1776
Eco57I CTGAAG 1 cut(s) 1995
Eco81I CCTNAGG 1 cut(s) 1071
EcoICRI GAGCTC 2 cut(s) 1512, 1776
EcoRII CCWGG 4 cut(s) 247, 275, 779, 1806
EcoT14I CCWWGG 3 cut(s) 204, 557, 1450
EcoT38I GRGCYC 3 cut(s) 661, 1514, 1778
ErhI CCWWGG 3 cut(s) 204, 557, 1450
FaeI CATG 8 cut(s) 179, 433, 561, 620, 837, 945, 977, 2004
FaqI GGGAC 4 cut(s) 239, 1439, 1700, 1782
FatI CATG 8 cut(s) 175, 429, 557, 616, 833, 941, 973, 2000
FauI CCCGC 2 cut(s) 113, 1916
FbaI TGATCA 1 cut(s) 1744
Fnu4HI GCNGC 8 cut(s) 237, 474, 552, 1719, 1756, 1875, 1917, 2013
FokI GGATG 6 cut(s) 62, 513, 945, 1061, 1428, 1509
FriOI GRGCYC 3 cut(s) 661, 1514, 1778
Fsp4HI GCNGC 8 cut(s) 237, 474, 552, 1719, 1756, 1875, 1917, 2013
FspBI CTAG 3 cut(s) 1491, 1698, 1938
GluI GCNGC 8 cut(s) 237, 474, 552, 1719, 1756, 1875, 1917, 2013
GsaI CCCAGC 4 cut(s) 637, 1651, 1794, 1801
GsuI CTGGAG 1 cut(s) 1405
HaeIII GGCC 5 cut(s) 21, 252, 372, 659, 1317
HapII CCGG 4 cut(s) 321, 386, 1515, 1857
Hin1I GRCGYC 1 cut(s) 171
Hin1II CATG 8 cut(s) 179, 433, 561, 620, 837, 945, 977, 2004
HincII GTYRAC 1 cut(s) 6
HindII GTYRAC 1 cut(s) 6
HindIII AAGCTT 1 cut(s) 303
HpaII CCGG 4 cut(s) 321, 386, 1515, 1857
HphI GGTGA 5 cut(s) 449, 619, 860, 1193, 1967
Hpy166II GTNNAC 4 cut(s) 6, 923, 950, 1157
Hpy8I GTNNAC 4 cut(s) 6, 923, 950, 1157
Hpy99I CGWCG 1 cut(s) 38
HpyAV CCTTC 5 cut(s) 211, 345, 415, 845, 1973
HpyCH4III ACNGT 4 cut(s) 401, 737, 1403, 1579
HpyCH4IV ACGT 4 cut(s) 36, 171, 289, 1213
HpyF10VI GCNNNNNNNGC 2 cut(s) 598, 1403
HpyF3I CTNAG 3 cut(s) 1071, 1605, 2072
HpySE526I ACGT 4 cut(s) 36, 171, 289, 1213
Hsp92I GRCGYC 1 cut(s) 171
Hsp92II CATG 8 cut(s) 179, 433, 561, 620, 837, 945, 977, 2004
KpnI GGTACC 1 cut(s) 1857
Ksp22I TGATCA 1 cut(s) 1744
Kzo9I GATC 9 cut(s) 61, 67, 463, 515, 572, 826, 1271, 1559, 1744
LguI GCTCTTC 1 cut(s) 766
LmnI GCTCC 8 cut(s) 16, 349, 592, 1251, 1344, 1386, 1517, 2020
Lsp1109I GCAGC 7 cut(s) 248, 460, 563, 1730, 1861, 1903, 2024
LweI GCATC 5 cut(s) 91, 530, 545, 574, 1663
MaeI CTAG 3 cut(s) 1491, 1698, 1938
MaeII ACGT 4 cut(s) 36, 171, 289, 1213
MaeIII GTNAC 4 cut(s) 359, 961, 1534, 2075
MalI GATC 9 cut(s) 63, 69, 465, 517, 574, 828, 1273, 1561, 1746
MboI GATC 9 cut(s) 61, 67, 463, 515, 572, 826, 1271, 1559, 1744
MboII GAAGA 8 cut(s) 95, 336, 754, 783, 930, 1024, 1323, 1988
MfeI CAATTG 1 cut(s) 1657
MflI RGATCY 2 cut(s) 515, 826
MhlI GDGCHC 4 cut(s) 661, 1514, 1643, 1778
MluCI AATT 9 cut(s) 117, 158, 348, 378, 1102, 1129, 1545, 1657, 1996
MlyI GAGTC 2 cut(s) 619, 986
MmeI TCCRAC 9 cut(s) 719, 989, 1322, 1424, 1499, 1547, 1799, 1861, 1922
MroXI GAANNNNTTC 4 cut(s) 87, 775, 1621, 1834
MseI TTAA 3 cut(s) 314, 453, 717
MslI CAYNNNNRTG 1 cut(s) 499
MspA1I CMGCKG 1 cut(s) 473
MspI CCGG 4 cut(s) 321, 386, 1515, 1857
MspR9I CCNGG 6 cut(s) 249, 277, 321, 387, 781, 1808
MunI CAATTG 1 cut(s) 1657
Mva1269I GAATGC 1 cut(s) 266
MvaI CCWGG 4 cut(s) 249, 277, 781, 1808
MwoI GCNNNNNNNGC 2 cut(s) 598, 1403
NciI CCSGG 2 cut(s) 321, 387
NcoI CCATGG 1 cut(s) 557
NdeII GATC 9 cut(s) 61, 67, 463, 515, 572, 826, 1271, 1559, 1744
NlaIII CATG 8 cut(s) 179, 433, 561, 620, 837, 945, 977, 2004
NlaIV GGNNCC 8 cut(s) 333, 517, 659, 1448, 1523, 1688, 1770, 1855
NmuCI GTSAC 2 cut(s) 1534, 2075
NspI RCATGY 2 cut(s) 433, 620
NspV TTCGAA 1 cut(s) 154
PciSI GCTCTTC 1 cut(s) 766
PcsI WCGNNNNNNNCGW 2 cut(s) 168, 1407
PctI GAATGC 1 cut(s) 266
PdmI GAANNNNTTC 4 cut(s) 87, 775, 1621, 1834
PfoI TCCNGGA 1 cut(s) 319
PkrI GCNGC 8 cut(s) 238, 475, 553, 1720, 1757, 1876, 1918, 2014
PleI GAGTC 2 cut(s) 618, 985
PpsI GAGTC 2 cut(s) 618, 985
PshAI GACNNNNGTC 1 cut(s) 976
PshBI ATTAAT 1 cut(s) 717
PsiI TTATAA 1 cut(s) 189
Psp124BI GAGCTC 2 cut(s) 1514, 1778
Psp6I CCWGG 4 cut(s) 247, 275, 779, 1806
PspFI CCCAGC 4 cut(s) 633, 1647, 1790, 1797
PspGI CCWGG 4 cut(s) 247, 275, 779, 1806
PspN4I GGNNCC 8 cut(s) 333, 517, 659, 1448, 1523, 1688, 1770, 1855
PspOMI GGGCCC 1 cut(s) 657
PspPI GGNCC 5 cut(s) 370, 657, 658, 1687, 1769
PstI CTGCAG 2 cut(s) 449, 1720
PstNI CAGNNNCTG 1 cut(s) 2079
PsuI RGATCY 2 cut(s) 515, 826
PvuII CAGCTG 1 cut(s) 473
RsaI GTAC 2 cut(s) 439, 1855
RsaNI GTAC 2 cut(s) 438, 1854
RseI CAYNNNNRTG 1 cut(s) 499
SacI GAGCTC 2 cut(s) 1514, 1778
SapI GCTCTTC 1 cut(s) 766
SaqAI TTAA 3 cut(s) 314, 453, 717
SatI GCNGC 8 cut(s) 237, 474, 552, 1719, 1756, 1875, 1917, 2013
Sau3AI GATC 9 cut(s) 61, 67, 463, 515, 572, 826, 1271, 1559, 1744
Sau96I GGNCC 5 cut(s) 370, 657, 658, 1687, 1769
SchI GAGTC 2 cut(s) 619, 986
ScrFI CCNGG 6 cut(s) 249, 277, 321, 387, 781, 1808
SduI GDGCHC 4 cut(s) 661, 1514, 1643, 1778
SfaNI GCATC 5 cut(s) 91, 530, 545, 574, 1663
SfcI CTRYAG 3 cut(s) 445, 468, 1716
SfuI TTCGAA 1 cut(s) 154
SinI GGWCC 2 cut(s) 1687, 1769
SmiMI CAYNNNNRTG 1 cut(s) 499
Sse9I AATT 9 cut(s) 117, 158, 348, 378, 1102, 1129, 1545, 1657, 1996
SspMI CTAG 3 cut(s) 1491, 1698, 1938
SstI GAGCTC 2 cut(s) 1514, 1778
StyD4I CCNGG 6 cut(s) 247, 275, 319, 385, 779, 1806
StyI CCWWGG 3 cut(s) 204, 557, 1450
TaaI ACNGT 4 cut(s) 401, 737, 1403, 1579
TaiI ACGT 4 cut(s) 39, 174, 292, 1216
TaqI TCGA 7 cut(s) 66, 129, 154, 162, 382, 1090, 1712
TaqII GACCGA 2 cut(s) 272, 1786
TasI AATT 9 cut(s) 117, 158, 348, 378, 1102, 1129, 1545, 1657, 1996
TauI GCSGC 1 cut(s) 1758
Tru1I TTAA 3 cut(s) 314, 453, 717
Tru9I TTAA 3 cut(s) 314, 453, 717
TscAI CASTG 2 cut(s) 1747, 2080
TseFI GTSAC 2 cut(s) 1534, 2075
TseI GCWGC 7 cut(s) 236, 473, 551, 1718, 1874, 1916, 2012
Tsp45I GTSAC 2 cut(s) 1534, 2075
TspDTI ATGAA 8 cut(s) 230, 312, 699, 930, 1371, 1647, 1989, 2079
TspGWI ACGGA 3 cut(s) 328, 1152, 1320
TspRI CASTG 2 cut(s) 1747, 2080
VpaK11BI GGWCC 2 cut(s) 1687, 1769
VspI ATTAAT 1 cut(s) 717
XapI RAATTY 3 cut(s) 117, 158, 1129
XceI RCATGY 2 cut(s) 433, 620
XmnI GAANNNNTTC 4 cut(s) 87, 775, 1621, 1834
XspI CTAG 3 cut(s) 1491, 1698, 1938
ZraI GACGTC 1 cut(s) 172
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.