Rmu_sc0005292.1_g000027

zinc finger CCCH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005292.1
OG0000602
Physical Location & Seq
Reverse (-)
117671 .. 129897
12227 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005292.1_g000027.1.cds

Sequence Viewer

Length: 2331 bp
atggagctctctgaatcctcctcctctgttttcccaaatctggatttgcatatcggcaacagcaacgaaatcgaccaagttcagctcaatcattccgacatagggtctcaacggtccaccgccgccgaccagcagctggacaatcactccggtggtgacgcggcggttagtcattccagtcccgatcctgacgttgttgatgtcgtggatcacgctgtcgttgatgagattgagagattggatttgagaggggacgatgtagcggtggaggttgcggcagcggaggtagaggagaagaaagaggaagggggagaggttgaggcggaggagaagagttctaatggtggtggtggagaaatcgaaaacggaaatgaaagtgagagacagagcgaggaagaagagagcaatgaaggagaaaacaggagtgagaatggaggtgagggagagaagaaggggggagaatataacacaaggtatcggtacccagtgaggcctgaagctgaagactgttccttttaccccaagacggggaattgcaagttcggttccaattgcaggtttaatcaccctgttagaaggaaaaacaaccaggtttttaaagacaaggtgaaggaaaaggatgcgttgtcagagaagccaagccagacagaatgcaagtattacttaaggccagggggatgtaagtatgggaaagcttgcagatacaaccatggaaaagggaaaccttcggttgctccagttgtggaactcaactttctgggactaccaattcgacggggggggagagagtgttcctactatatgcaaaatggctcctgcaggtatggatcaaactgcaggtttaatcaccctgatcctactgctgcatcattacaaggtggatcgcaatcatcatcttggtctgcaccaagatcattgaatgagactccgctttatatgccaatgatgatgccgccatctcaaggggttccttctcaaaatacagaatggaatggctatcaggcaccagtttatctagaaagaagcatgcctgcacgtccgccatatgttatcaacaactcagggaccaaaaccaatgtttataaacaatatccaccgtcaaatcaagttgatgaatttccagaacgacctggacaacgtttgtgcagtttctttttaagaacaggggactgtaagtttaaatctaattgcaaatatcatcatccaaaaagtcagactgcagtatccccctcatttgcactgagtgacaagggcctgcctttgagaccattgtttcgacctgcatacgctatcatgctgaaacacctccgttccgaagcactagaaaattttaaaataagactggagcgatcattggtccaaagagaagggtttgcttcatccgttcttgcccatactgaatcttgcatgcgtgagtttgaccaagcatgtgcagatgcttcgatagatgttgccataaattccaatgggaatgcatatggcgttgataaggaaaaagccaaaaggaaacttaagtgcgatatagaagcatatgcatcatctcaacttgacgaacaattgtcaagattgaaactggactgtgagagacaactttgggaagctttaagtcttaatgatcctatagcggctctgctacttgatggtgacgacgacatctggaggaaaaaaaggggacttcttcatgatgccatagaacttgtagatgaacgtttttcaaatgagattaatggttatgcgttggaccaaggaagaagtgccgaaatgatgcaaattttgagggaccatgcaagaagagtggcggaggaaaaaccaagacaggaggctactcgtgttctgactcacatggttaataggtttctccgagccttcaattacgatagtgatgcaaatgctagaacttggactgtggaggttgacattagaattattatccggaatgctcgctatgagtctcttaagattttatctactctggctgccattcgcctggataagacgcaagatgatattgaacgagttctctcttctactttaatcgatggagaaataagttctacaaatgttcttgactcagttattacttgggatatggtttcttcaaatgataccctaattacaccactggagtgccagttgttgtggagacagttcaaagaacaaaccgagcctgctgtctttcaagcttatgcaacacaggttgctatagatggaatcaagaagagatcttcaagacccaggtggtttcgagccaaaccatcgccggaaattgaagttcagattggggcagcattgtcatggaagtcgaccctcgatccgccatgtactgcttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-CCCH zf-CCCH_2

Protein Analysis

776

Amino Acids

87.06

Weight (kDa)

5.52

Isoelectric Point (pI)

52.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000602)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G48195 AT3G48440 AT5G63260 AT5G63260
fragaria_vesca FvH4_5g07100 FvH4_5g07100 FvH4_5g07100 FvH4_5g07100 FvH4_5g07100 FvH4_5g07100 FvH4_5g07100
malus_domestica MD06G1158800.v1.1 MD06G1159000.v1.1 MD06G1159200.v1.1 MD14G1165100.v1.1 MD14G1165300.v1.1 MD14G1165400.v1.1 MD14G1165500.v1.1
prunus_persica Prupe.5G158300_v2.0.a1 Prupe.5G158300_v2.0.a1 Prupe.5G158400_v2.0.a1 Prupe.5G158400_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158600_v2.0.a1 Prupe.5G158700_v2.0.a1 Prupe.5G158800_v2.0.a1 Prupe.5G158900_v2.0.a1 Prupe.5G159000_v2.0.a1 Prupe.5G159100_v2.0.a1 Prupe.5G159100_v2.0.a1
pyrus_communis pycom02g00910 pycom06g14200 pycom14g13760 pycom14g13790 pycom14g13800
rosa_chinensis RchiOBHm_Chr5g0019351 RchiOBHm_Chr5g0022771 RchiOBHm_Chr7g0191441 RchiOBHm_Chr7g0191531
rosa_laevigata RLG00000004449 RLG00000032440
rosa_multiflora Rmu_sc0001809.1_g000062 Rmu_sc0005292.1_g000027
rosa_roxburghii Rroxscaffold_1G00074260 Rroxscaffold_6G00390280 Rroxscaffold_7G00168660
rosa_rugosa Rorug05G0049600 Rorug05G0049700 Rorug05G0049800 Rorug06G0510400
rosa_samantha Rh5CG151400 Rh5DG140300 Rh7AG118400 Rh7BG120400 Rh7CG123200 Rh7DG121300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1083
Acc36I ACCTGC 4 cut(s) 546, 810, 828, 1288
Acc65I GGTACC 1 cut(s) 480
AccB1I GGYRCC 2 cut(s) 480, 1003
AccB7I CCANNNNNTGG 1 cut(s) 136
AccI GTMKAC 1 cut(s) 2303
AccII CGCG 1 cut(s) 161
AccIII TCCGGA 1 cut(s) 1932
AclI AACGTT 2 cut(s) 1138, 1708
AclWI GGATC 7 cut(s) 179, 216, 835, 848, 889, 1610, 2306
AcsI RAATTY 4 cut(s) 1115, 1327, 1459, 1770
AcuI CTGAAG 2 cut(s) 516, 522
AdeI CACNNNGTG 1 cut(s) 1244
AfaI GTAC 2 cut(s) 482, 2323
AfiI CCNNNNNNNGG 8 cut(s) 40, 102, 136, 526, 527, 528, 555, 962
AflII CTTAAG 3 cut(s) 664, 1511, 1955
AhdI GACNNNNNGTC 1 cut(s) 103
AjiI CACGTC 1 cut(s) 1037
AjnI CCWGG 5 cut(s) 588, 670, 1129, 1986, 2234
AjuI GAANNNNNNNTTGG 2 cut(s) 2262, 2294
AleI CACNNNNGTG 2 cut(s) 150, 2125
AloI GAACNNNNNNTCC 2 cut(s) 775, 807
AluBI AGCT 7 cut(s) 7, 85, 136, 500, 695, 1601, 2183
AluI AGCT 7 cut(s) 7, 85, 136, 500, 695, 1601, 2183
Alw21I GWGCWC 1 cut(s) 9
Alw26I GTCTC 7 cut(s) 111, 376, 917, 1258, 1579, 1956, 2137
AlwI GGATC 7 cut(s) 179, 216, 835, 848, 889, 1610, 2306
AlwNI CAGNNNCTG 1 cut(s) 136
Aor13HI TCCGGA 1 cut(s) 1932
AoxI GGCC 3 cut(s) 491, 668, 1252
ApeKI GCWGC 5 cut(s) 133, 278, 863, 1976, 2285
ApoI RAATTY 4 cut(s) 1115, 1327, 1459, 1770
ArsI GACNNNNNNTTYG 4 cut(s) 753, 785, 1257, 1289
AseI ATTAAT 1 cut(s) 1725
Asp700I GAANNNNTTC 1 cut(s) 2016
Asp718I GGTACC 1 cut(s) 480
AspS9I GGNCC 6 cut(s) 114, 1065, 1252, 1357, 1741, 1780
AsuHPI GGTGA 6 cut(s) 167, 449, 557, 619, 839, 1655
AvaII GGWCC 5 cut(s) 114, 1065, 1357, 1741, 1780
BaeI ACNNNNGTAYC 2 cut(s) 1206, 1239
BanI GGYRCC 2 cut(s) 480, 1003
BanII GRGCYC 1 cut(s) 9
BauI CACGAG 1 cut(s) 1827
BbsI GAAGAC 1 cut(s) 510
Bbv12I GWGCWC 1 cut(s) 9
BbvI GCAGC 5 cut(s) 145, 290, 850, 1963, 2297
BccI CCATC 5 cut(s) 964, 1634, 2033, 2201, 2263
BcgI CGANNNNNNTGC 6 cut(s) 52, 86, 1422, 1456, 1865, 1899
BciT130I CCWGG 5 cut(s) 590, 672, 1131, 1988, 2236
BciVI GTATCC 1 cut(s) 1234
BcoDI GTCTC 7 cut(s) 111, 376, 917, 1258, 1579, 1956, 2137
BfaI CTAG 3 cut(s) 1016, 1322, 1893
BfmI CTRYAG 5 cut(s) 817, 835, 1218, 1620, 2202
BfrI CTTAAG 3 cut(s) 664, 1511, 1955
BfuAI ACCTGC 4 cut(s) 546, 810, 828, 1288
BfuI GTATCC 1 cut(s) 1234
BglII AGATCT 1 cut(s) 2222
Bme1390I CCNGG 5 cut(s) 590, 672, 1131, 1988, 2236
Bme18I GGWCC 5 cut(s) 114, 1065, 1357, 1741, 1780
BmeRI GACNNNNNGTC 1 cut(s) 103
BmgBI CACGTC 1 cut(s) 1037
BmgT120I GGNCC 6 cut(s) 114, 1065, 1252, 1357, 1741, 1780
BmiI GGNNCC 7 cut(s) 482, 547, 814, 969, 1005, 1066, 1781
BmrFI CCNGG 5 cut(s) 590, 672, 1131, 1988, 2236
BmrI ACTGGG 1 cut(s) 479
BmsI GCATC 8 cut(s) 610, 875, 939, 1426, 1544, 1675, 1755, 1873
BmuI ACTGGG 1 cut(s) 479
BpiI GAAGAC 1 cut(s) 510
BpmI CTGGAG 4 cut(s) 720, 1364, 1678, 2144
BpuEI CTTGAG 1 cut(s) 945
Bsa29I ATCGAT 1 cut(s) 2037
BsaBI GATNNNNATC 1 cut(s) 886
BsaI GGTCTC 2 cut(s) 111, 1258
BsaJI CCNNGG 4 cut(s) 671, 709, 1744, 2234
BsaWI WCCGGW 2 cut(s) 149, 1932
BsaXI ACNNNNNCTCC 6 cut(s) 131, 161, 775, 805, 2117, 2147
Bsc4I CCNNNNNNNGG 8 cut(s) 40, 102, 136, 526, 527, 528, 555, 962
Bse1I ACTGG 8 cut(s) 177, 485, 737, 1007, 1347, 1578, 2127, 2131
Bse3DI GCAATG 1 cut(s) 412
Bse8I GATNNNNATC 1 cut(s) 886
BseAI TCCGGA 1 cut(s) 1932
BseBI CCWGG 5 cut(s) 590, 672, 1131, 1988, 2236
BseCI ATCGAT 1 cut(s) 2037
BseDI CCNNGG 4 cut(s) 671, 709, 1744, 2234
BseGI GGATG 4 cut(s) 625, 683, 1201, 1379
BseJI GATNNNNATC 1 cut(s) 886
BseLI CCNNNNNNNGG 8 cut(s) 40, 102, 136, 526, 527, 528, 555, 962
BseMI GCAATG 1 cut(s) 412
BseMII CTCAG 3 cut(s) 1074, 1232, 2085
BseNI ACTGG 8 cut(s) 177, 485, 737, 1007, 1347, 1578, 2127, 2131
BseRI GAGGAG 4 cut(s) 10, 13, 305, 341
BseXI GCAGC 5 cut(s) 145, 290, 850, 1963, 2297
BsgI GTGCAG 4 cut(s) 888, 1017, 1165, 1452
Bsh1236I CGCG 1 cut(s) 161
BshFI GGCC 3 cut(s) 493, 670, 1254
BshNI GGYRCC 2 cut(s) 480, 1003
BshVI ATCGAT 1 cut(s) 2037
BsiHKAI GWGCWC 1 cut(s) 9
BsiSI CCGG 3 cut(s) 150, 1933, 2261
BslFI GGGAC 7 cut(s) 165, 266, 774, 1078, 1181, 1686, 1793
BslI CCNNNNNNNGG 8 cut(s) 40, 102, 136, 526, 527, 528, 555, 962
BsmAI GTCTC 7 cut(s) 111, 376, 917, 1258, 1579, 1956, 2137
BsmFI GGGAC 7 cut(s) 165, 266, 774, 1078, 1181, 1686, 1793
BsmI GAATGC 3 cut(s) 656, 1477, 1942
BsnI GGCC 3 cut(s) 493, 670, 1254
Bso31I GGTCTC 2 cut(s) 111, 1258
Bsp1286I GDGCHC 1 cut(s) 9
Bsp13I TCCGGA 1 cut(s) 1932
Bsp19I CCATGG 1 cut(s) 709
BspANI GGCC 3 cut(s) 493, 670, 1254
BspCNI CTCAG 3 cut(s) 1073, 1233, 2084
BspDI ATCGAT 1 cut(s) 2037
BspEI TCCGGA 1 cut(s) 1932
BspFNI CGCG 1 cut(s) 161
BspHI TCATGA 1 cut(s) 1681
BspLI GGNNCC 7 cut(s) 482, 547, 814, 969, 1005, 1066, 1781
BspMAI CTGCAG 3 cut(s) 821, 839, 1222
BspMI ACCTGC 4 cut(s) 546, 810, 828, 1288
BspPI GGATC 7 cut(s) 179, 216, 835, 848, 889, 1610, 2306
BspT107I GGYRCC 2 cut(s) 480, 1003
BspTI CTTAAG 3 cut(s) 664, 1511, 1955
BspTNI GGTCTC 2 cut(s) 111, 1258
BsrDI GCAATG 1 cut(s) 412
BsrI ACTGG 8 cut(s) 177, 485, 737, 1007, 1347, 1578, 2127, 2131
BssECI CCNNGG 4 cut(s) 671, 709, 1744, 2234
BssSI CACGAG 1 cut(s) 1827
BssT1I CCWWGG 2 cut(s) 709, 1744
Bst2BI CACGAG 1 cut(s) 1827
Bst2UI CCWGG 5 cut(s) 590, 672, 1131, 1988, 2236
Bst4CI ACNGT 7 cut(s) 114, 509, 1098, 1172, 1580, 1906, 2148
Bst6I CTCTTC 5 cut(s) 326, 393, 1786, 2029, 2213
BstAFI CTTAAG 3 cut(s) 664, 1511, 1955
BstC8I GCNNGC 7 cut(s) 697, 1028, 1032, 1256, 1409, 1942, 2169
BstDEI CTNAG 3 cut(s) 1060, 1241, 2071
BstDSI CCRYGG 1 cut(s) 709
BstF5I GGATG 4 cut(s) 625, 683, 1201, 1379
BstFNI CGCG 1 cut(s) 161
BstMAI GTCTC 7 cut(s) 111, 376, 917, 1258, 1579, 1956, 2137
BstMWI GCNNNNNNNGC 1 cut(s) 937
BstNI CCWGG 5 cut(s) 590, 672, 1131, 1988, 2236
BstNSI RCATGY 3 cut(s) 1030, 1411, 1431
BstSCI CCNGG 5 cut(s) 588, 670, 1129, 1986, 2234
BstSFI CTRYAG 5 cut(s) 817, 835, 1218, 1620, 2202
BstUI CGCG 1 cut(s) 161
BstV1I GCAGC 5 cut(s) 145, 290, 850, 1963, 2297
BstV2I GAAGAC 1 cut(s) 510
BstX2I RGATCY 1 cut(s) 2222
BstXI CCANNNNNNTGG 1 cut(s) 1987
BstYI RGATCY 1 cut(s) 2222
Bsu15I ATCGAT 1 cut(s) 2037
BsuI GTATCC 1 cut(s) 1234
BsuRI GGCC 3 cut(s) 493, 670, 1254
BsuTUI ATCGAT 1 cut(s) 2037
BtgI CCRYGG 1 cut(s) 709
BtgZI GCGATG 1 cut(s) 2241
BtrI CACGTC 1 cut(s) 1037
BtsCI GGATG 4 cut(s) 625, 683, 1201, 1379
BtsIMutI CAGTG 3 cut(s) 492, 1238, 2120
BveI ACCTGC 4 cut(s) 546, 810, 828, 1288
Cac8I GCNNGC 7 cut(s) 697, 1028, 1032, 1256, 1409, 1942, 2169
CaiI CAGNNNCTG 1 cut(s) 136
CciI TCATGA 1 cut(s) 1681
Cfr13I GGNCC 6 cut(s) 114, 1065, 1252, 1357, 1741, 1780
ClaI ATCGAT 1 cut(s) 2037
CseI GACGC 2 cut(s) 167, 2005
CsiI ACCWGGT 1 cut(s) 588
Csp6I GTAC 2 cut(s) 481, 2322
CspCI CAANNNNNGTGG 2 cut(s) 1776, 1811
CviQI GTAC 2 cut(s) 481, 2322
DdeI CTNAG 3 cut(s) 1060, 1241, 2071
DraI TTTAAA 3 cut(s) 598, 1180, 1333
DraIII CACNNNGTG 1 cut(s) 1244
DriI GACNNNNNGTC 1 cut(s) 103
Eam1104I CTCTTC 5 cut(s) 326, 393, 1786, 2029, 2213
Eam1105I GACNNNNNGTC 1 cut(s) 103
EarI CTCTTC 5 cut(s) 326, 393, 1786, 2029, 2213
EciI GGCGGA 4 cut(s) 338, 1029, 1814, 2304
Ecl136II GAGCTC 1 cut(s) 7
Eco130I CCWWGG 2 cut(s) 709, 1744
Eco147I AGGCCT 1 cut(s) 493
Eco24I GRGCYC 1 cut(s) 9
Eco31I GGTCTC 2 cut(s) 111, 1258
Eco47I GGWCC 5 cut(s) 114, 1065, 1357, 1741, 1780
Eco53kI GAGCTC 1 cut(s) 7
Eco57I CTGAAG 2 cut(s) 516, 522
EcoICRI GAGCTC 1 cut(s) 7
EcoO109I RGGNCCY 1 cut(s) 1252
EcoRII CCWGG 5 cut(s) 588, 670, 1129, 1986, 2234
EcoT14I CCWWGG 2 cut(s) 709, 1744
EcoT22I ATGCAT 2 cut(s) 1477, 1537
EcoT38I GRGCYC 1 cut(s) 9
ErhI CCWWGG 2 cut(s) 709, 1744
FalI AAGNNNNNCTT 2 cut(s) 647, 679
FaqI GGGAC 7 cut(s) 165, 266, 774, 1078, 1181, 1686, 1793
FauNDI CATATG 3 cut(s) 1045, 1477, 1531
FblI GTMKAC 1 cut(s) 2303
FokI GGATG 4 cut(s) 632, 690, 1188, 1366
FriOI GRGCYC 1 cut(s) 9
FspBI CTAG 3 cut(s) 1016, 1322, 1893
GsuI CTGGAG 4 cut(s) 720, 1364, 1678, 2144
HaeIII GGCC 3 cut(s) 493, 670, 1254
HapII CCGG 3 cut(s) 150, 1933, 2261
HgaI GACGC 2 cut(s) 167, 2005
HincII GTYRAC 2 cut(s) 1915, 2304
HindII GTYRAC 2 cut(s) 1915, 2304
HindIII AAGCTT 3 cut(s) 693, 1599, 2181
HinfI GANTC 7 cut(s) 14, 925, 1400, 1837, 1949, 2069, 2211
HpaII CCGG 3 cut(s) 150, 1933, 2261
HphI GGTGA 6 cut(s) 167, 449, 557, 619, 839, 1655
Hpy166II GTNNAC 3 cut(s) 117, 1915, 2304
Hpy188I TCNGA 8 cut(s) 13, 97, 631, 1215, 1315, 1836, 1862, 2277
Hpy8I GTNNAC 3 cut(s) 117, 1915, 2304
Hpy99I CGWCG 2 cut(s) 777, 1652
HpyAV CCTTC 9 cut(s) 299, 404, 445, 570, 604, 735, 981, 1361, 1876
HpyCH4III ACNGT 7 cut(s) 114, 509, 1098, 1172, 1580, 1906, 2148
HpyCH4IV ACGT 4 cut(s) 192, 1036, 1138, 1708
HpyF10VI GCNNNNNNNGC 1 cut(s) 937
HpyF3I CTNAG 3 cut(s) 1060, 1241, 2071
HpySE526I ACGT 4 cut(s) 192, 1036, 1138, 1708
Kpn2I TCCGGA 1 cut(s) 1932
KpnI GGTACC 1 cut(s) 484
LmnI GCTCC 4 cut(s) 4, 739, 818, 1345
Lsp1109I GCAGC 5 cut(s) 145, 290, 850, 1963, 2297
LweI GCATC 8 cut(s) 610, 875, 939, 1426, 1544, 1675, 1755, 1873
MabI ACCWGGT 1 cut(s) 588
MaeI CTAG 3 cut(s) 1016, 1322, 1893
MaeII ACGT 4 cut(s) 192, 1036, 1138, 1708
MaeIII GTNAC 3 cut(s) 155, 1244, 1643
MfeI CAATTG 2 cut(s) 550, 1556
MflI RGATCY 1 cut(s) 2222
MhlI GDGCHC 1 cut(s) 9
MlyI GAGTC 4 cut(s) 919, 1831, 1958, 2063
MmeI TCCRAC 2 cut(s) 120, 1719
Mph1103I ATGCAT 2 cut(s) 1477, 1537
MroI TCCGGA 1 cut(s) 1932
MroXI GAANNNNTTC 1 cut(s) 2016
MslI CAYNNNNRTG 3 cut(s) 150, 2125, 2293
MspA1I CMGCKG 2 cut(s) 136, 281
MspCI CTTAAG 3 cut(s) 664, 1511, 1955
MspI CCGG 3 cut(s) 150, 1933, 2261
MspR9I CCNGG 5 cut(s) 590, 672, 1131, 1988, 2236
MunI CAATTG 2 cut(s) 550, 1556
Mva1269I GAATGC 3 cut(s) 656, 1477, 1942
MvaI CCWGG 5 cut(s) 590, 672, 1131, 1988, 2236
MvnI CGCG 1 cut(s) 161
MwoI GCNNNNNNNGC 1 cut(s) 937
NcoI CCATGG 1 cut(s) 709
NdeI CATATG 3 cut(s) 1045, 1477, 1531
NlaIV GGNNCC 7 cut(s) 482, 547, 814, 969, 1005, 1066, 1781
NmuCI GTSAC 3 cut(s) 155, 1244, 1643
NsiI ATGCAT 2 cut(s) 1477, 1537
NspI RCATGY 3 cut(s) 1030, 1411, 1431
OliI CACNNNNGTG 2 cut(s) 150, 2125
PaeI GCATGC 2 cut(s) 1030, 1411
PagI TCATGA 1 cut(s) 1681
PceI AGGCCT 1 cut(s) 493
PctI GAATGC 3 cut(s) 656, 1477, 1942
PdmI GAANNNNTTC 1 cut(s) 2016
PfeI GAWTC 3 cut(s) 14, 1400, 2211
PflMI CCANNNNNTGG 1 cut(s) 136
PleI GAGTC 4 cut(s) 919, 1831, 1957, 2063
PpsI GAGTC 4 cut(s) 919, 1831, 1957, 2063
PshBI ATTAAT 1 cut(s) 1725
PsiI TTATAA 1 cut(s) 1083
Psp124BI GAGCTC 1 cut(s) 9
Psp1406I AACGTT 2 cut(s) 1138, 1708
Psp6I CCWGG 5 cut(s) 588, 670, 1129, 1986, 2234
PspGI CCWGG 5 cut(s) 588, 670, 1129, 1986, 2234
PspN4I GGNNCC 7 cut(s) 482, 547, 814, 969, 1005, 1066, 1781
PspPI GGNCC 6 cut(s) 114, 1065, 1252, 1357, 1741, 1780
PstI CTGCAG 3 cut(s) 821, 839, 1222
PstNI CAGNNNCTG 1 cut(s) 136
PsuI RGATCY 1 cut(s) 2222
PvuII CAGCTG 1 cut(s) 136
RsaI GTAC 2 cut(s) 482, 2323
RsaNI GTAC 2 cut(s) 481, 2322
RseI CAYNNNNRTG 3 cut(s) 150, 2125, 2293
SacI GAGCTC 1 cut(s) 9
SalI GTCGAC 1 cut(s) 2302
Sau96I GGNCC 6 cut(s) 114, 1065, 1252, 1357, 1741, 1780
SbfI CCTGCAGG 1 cut(s) 821
SchI GAGTC 4 cut(s) 919, 1831, 1958, 2063
ScrFI CCNGG 5 cut(s) 590, 672, 1131, 1988, 2236
SdaI CCTGCAGG 1 cut(s) 821
SduI GDGCHC 1 cut(s) 9
SexAI ACCWGGT 1 cut(s) 588
SfaNI GCATC 8 cut(s) 610, 875, 939, 1426, 1544, 1675, 1755, 1873
SfcI CTRYAG 5 cut(s) 817, 835, 1218, 1620, 2202
SinI GGWCC 5 cut(s) 114, 1065, 1357, 1741, 1780
SmiMI CAYNNNNRTG 3 cut(s) 150, 2125, 2293
SmlI CTYRAG 4 cut(s) 664, 960, 1511, 1955
SmoI CTYRAG 4 cut(s) 664, 960, 1511, 1955
SphI GCATGC 2 cut(s) 1030, 1411
Sse8387I CCTGCAGG 1 cut(s) 821
SseBI AGGCCT 1 cut(s) 493
SspMI CTAG 3 cut(s) 1016, 1322, 1893
SstI GAGCTC 1 cut(s) 9
StuI AGGCCT 1 cut(s) 493
StyD4I CCNGG 5 cut(s) 588, 670, 1129, 1986, 2234
StyI CCWWGG 2 cut(s) 709, 1744
TaaI ACNGT 7 cut(s) 114, 509, 1098, 1172, 1580, 1906, 2148
TaiI ACGT 4 cut(s) 195, 1039, 1141, 1711
TaqI TCGA 9 cut(s) 72, 360, 772, 1276, 1442, 2037, 2245, 2303, 2310
TatI WGTACW 1 cut(s) 2321
TauI GCSGC 5 cut(s) 125, 164, 278, 955, 1628
TfiI GAWTC 3 cut(s) 14, 1400, 2211
TscAI CASTG 3 cut(s) 492, 1245, 2127
TseFI GTSAC 3 cut(s) 155, 1244, 1643
TseI GCWGC 5 cut(s) 133, 278, 863, 1976, 2285
Tsp45I GTSAC 3 cut(s) 155, 1244, 1643
TspDTI ATGAA 6 cut(s) 387, 423, 1128, 1368, 1670, 1719
TspGWI ACGGA 3 cut(s) 381, 1298, 1372
TspRI CASTG 3 cut(s) 492, 1245, 2127
Van91I CCANNNNNTGG 1 cut(s) 136
Vha464I CTTAAG 3 cut(s) 664, 1511, 1955
VpaK11BI GGWCC 5 cut(s) 114, 1065, 1357, 1741, 1780
VspI ATTAAT 1 cut(s) 1725
XapI RAATTY 4 cut(s) 1115, 1327, 1459, 1770
XbaI TCTAGA 1 cut(s) 1015
XceI RCATGY 3 cut(s) 1030, 1411, 1431
XmiI GTMKAC 1 cut(s) 2303
XmnI GAANNNNTTC 1 cut(s) 2016
XspI CTAG 3 cut(s) 1016, 1322, 1893
Zsp2I ATGCAT 2 cut(s) 1477, 1537
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.