RchiOBHm_Chr7g0191441

zinc finger CCCH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000602
Physical Location & Seq
Reverse (-)
10222200 .. 10225103
2904 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ17107

Sequence Viewer

Length: 882 bp
ATGCAAGTTCATTATTACTTAAGGCCAGGGGGATGTAAGTATGGGAAAGCTTGCAGATACAACCATGGAAAAGGGAAACCTTTGGTTGCTCCAGTTGTGGAACTTAACTTTCTGGGACTGCCAATTCGACAGGGGGAGAGAGAGTGTCCCTACTATATGCGAAATGGCTCCTGCAAGTATGGATCAAACTGCAGGTTTAATCACCCTGATCCTACTGCTGCAGGAGGATCTGACCCTCCGTCTGGATTTGATAATGGTGGACCTGCATTATTACAAGGTGGATTGCAATCATCATCTTGGTCTGCACCAAGATCATTGAATGAGACTCCGCTTTATATGCCAATGATGATGCCACCATCTCAAGGGGTTCCTTCCCAAAATACAGAATGGAATGGCTATCAGGCACCAGTTTATCTAGAAAGAAGTATGCCTGCACCTCCACCATATGTTATCAACAACTCAGGGACCGAAACCAATGTTTATAAACAATATCCACCGTCAAATCAAGTTGATGAATTCCCAGAACGACCTGGACAACCTTTGTGCAGTTTCTTTTTAAGAACAGGGGACTGTAAGTTTAAATCTAACTGCAAATATCATCATCCAAAAAGTCAGACTGCAGTATCCCCCTCATTTGCACTGAGTGACAAGGGCCTGCCTTTGAGACCGGATCAGAATATTTGCACCCATTACAGTCGCTATGGCATTTGCAAATTTGGGCCAGCTTGTAAATTTGATCATCCGTTACATTTAACATCTTCAACTACATCTGGTCTTGATCATCAACTTCCTTTCAGTGACTTGGCAAATACAAAAGAGGCGGGAATAGCTAGGAGCAGAAGTGGAACTGATGATACAATTCAGCTGCAACAAGCTGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-CCCH zf-CCCH_2

Protein Analysis

293

Amino Acids

32.27

Weight (kDa)

8.69

Isoelectric Point (pI)

62.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-CCCH PF00642 45 - 69 1.2e-10 Zinc finger C-x8-C-x5-C-x3-H type (and similar)
zf_CCCH_4 PF18345 49 - 68 4.2e-06 Zinc finger domain
zf-CCCH_4 PF18044 49 - 69 1.7e-07 CCCH-type zinc finger
zf-CCCH PF00642 177 - 203 2e-07 Zinc finger C-x8-C-x5-C-x3-H type (and similar)
zf-CCCH PF00642 224 - 248 6e-09 Zinc finger C-x8-C-x5-C-x3-H type (and similar)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000602)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G48195 AT3G48440 AT5G63260 AT5G63260
fragaria_vesca FvH4_5g07100 FvH4_5g07100 FvH4_5g07100 FvH4_5g07100 FvH4_5g07100 FvH4_5g07100 FvH4_5g07100
malus_domestica MD06G1158800.v1.1 MD06G1159000.v1.1 MD06G1159200.v1.1 MD14G1165100.v1.1 MD14G1165300.v1.1 MD14G1165400.v1.1 MD14G1165500.v1.1
prunus_persica Prupe.5G158300_v2.0.a1 Prupe.5G158300_v2.0.a1 Prupe.5G158400_v2.0.a1 Prupe.5G158400_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158600_v2.0.a1 Prupe.5G158700_v2.0.a1 Prupe.5G158800_v2.0.a1 Prupe.5G158900_v2.0.a1 Prupe.5G159000_v2.0.a1 Prupe.5G159100_v2.0.a1 Prupe.5G159100_v2.0.a1
pyrus_communis pycom02g00910 pycom06g14200 pycom14g13760 pycom14g13790 pycom14g13800
rosa_chinensis RchiOBHm_Chr5g0019351 RchiOBHm_Chr5g0022771 RchiOBHm_Chr7g0191441 RchiOBHm_Chr7g0191531
rosa_laevigata RLG00000004449 RLG00000032440
rosa_multiflora Rmu_sc0001809.1_g000062 Rmu_sc0005292.1_g000027
rosa_roxburghii Rroxscaffold_1G00074260 Rroxscaffold_6G00390280 Rroxscaffold_7G00168660
rosa_rugosa Rorug05G0049600 Rorug05G0049700 Rorug05G0049800 Rorug06G0510400
rosa_samantha Rh5CG151400 Rh5DG140300 Rh7AG118400 Rh7BG120400 Rh7CG123200 Rh7DG121300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 483
Acc36I ACCTGC 2 cut(s) 183, 271
AccB1I GGYRCC 1 cut(s) 403
AciI CCGC 2 cut(s) 329, 821
AclWI GGATC 4 cut(s) 190, 203, 235, 678
AcsI RAATTY 3 cut(s) 515, 713, 731
AdeI CACNNNGTG 1 cut(s) 644
AfiI CCNNNNNNNGG 2 cut(s) 242, 362
AflII CTTAAG 1 cut(s) 19
AgsI TTSAA 2 cut(s) 319, 762
AhdI GACNNNNNGTC 1 cut(s) 238
AjnI CCWGG 2 cut(s) 25, 529
AluBI AGCT 5 cut(s) 50, 725, 830, 865, 875
AluI AGCT 5 cut(s) 50, 725, 830, 865, 875
Alw26I GTCTC 2 cut(s) 317, 658
AlwI GGATC 4 cut(s) 190, 203, 235, 678
AoxI GGCC 3 cut(s) 23, 652, 719
ApeKI GCWGC 2 cut(s) 218, 865
ApoI RAATTY 3 cut(s) 515, 713, 731
ArsI GACNNNNNNTTYG 2 cut(s) 108, 140
AspS9I GGNCC 4 cut(s) 260, 465, 652, 719
AsuHPI GGTGA 1 cut(s) 194
AvaII GGWCC 2 cut(s) 260, 465
BaeI ACNNNNGTAYC 2 cut(s) 606, 639
BanI GGYRCC 1 cut(s) 403
BbvI GCAGC 2 cut(s) 205, 852
BccI CCATC 1 cut(s) 364
BciT130I CCWGG 2 cut(s) 27, 531
BciVI GTATCC 1 cut(s) 634
BclI TGATCA 2 cut(s) 736, 778
BcoDI GTCTC 2 cut(s) 317, 658
BfaI CTAG 2 cut(s) 416, 831
BfmI CTRYAG 3 cut(s) 190, 219, 618
BfrI CTTAAG 1 cut(s) 19
BfuAI ACCTGC 2 cut(s) 183, 271
BfuI GTATCC 1 cut(s) 634
BisI GCNGC 2 cut(s) 219, 866
BlsI GCNGC 2 cut(s) 220, 867
Bme1390I CCNGG 2 cut(s) 27, 531
Bme18I GGWCC 2 cut(s) 260, 465
BmeRI GACNNNNNGTC 1 cut(s) 238
BmgT120I GGNCC 4 cut(s) 260, 465, 652, 719
BmiI GGNNCC 4 cut(s) 169, 369, 405, 466
BmrFI CCNGG 2 cut(s) 27, 531
BmsI GCATC 1 cut(s) 339
BpmI CTGGAG 1 cut(s) 75
BpuEI CTTGAG 1 cut(s) 345
BsaBI GATNNNNATC 1 cut(s) 286
BsaI GGTCTC 1 cut(s) 658
BsaJI CCNNGG 2 cut(s) 26, 64
BsaWI WCCGGW 1 cut(s) 667
BsaXI ACNNNNNCTCC 4 cut(s) 128, 158, 826, 856
Bsc4I CCNNNNNNNGG 2 cut(s) 242, 362
Bse1I ACTGG 2 cut(s) 92, 407
Bse8I GATNNNNATC 1 cut(s) 286
BseBI CCWGG 2 cut(s) 27, 531
BseDI CCNNGG 2 cut(s) 26, 64
BseGI GGATG 3 cut(s) 38, 601, 739
BseJI GATNNNNATC 1 cut(s) 286
BseLI CCNNNNNNNGG 2 cut(s) 242, 362
BseMII CTCAG 2 cut(s) 474, 632
BseNI ACTGG 2 cut(s) 92, 407
BseXI GCAGC 2 cut(s) 205, 852
BsgI GTGCAG 3 cut(s) 288, 417, 565
BshFI GGCC 3 cut(s) 25, 654, 721
BshNI GGYRCC 1 cut(s) 403
BsiSI CCGG 1 cut(s) 668
BslFI GGGAC 4 cut(s) 129, 132, 478, 581
BslI CCNNNNNNNGG 2 cut(s) 242, 362
BsmAI GTCTC 2 cut(s) 317, 658
BsmFI GGGAC 4 cut(s) 129, 132, 478, 581
BsnI GGCC 3 cut(s) 25, 654, 721
Bso31I GGTCTC 1 cut(s) 658
Bsp143I GATC 7 cut(s) 182, 208, 227, 311, 670, 736, 778
Bsp19I CCATGG 1 cut(s) 64
BspACI CCGC 2 cut(s) 329, 821
BspANI GGCC 3 cut(s) 25, 654, 721
BspCNI CTCAG 2 cut(s) 473, 633
BspLI GGNNCC 4 cut(s) 169, 369, 405, 466
BspMAI CTGCAG 3 cut(s) 194, 223, 622
BspMI ACCTGC 2 cut(s) 183, 271
BspPI GGATC 4 cut(s) 190, 203, 235, 678
BspT107I GGYRCC 1 cut(s) 403
BspTI CTTAAG 1 cut(s) 19
BspTNI GGTCTC 1 cut(s) 658
BsrI ACTGG 2 cut(s) 92, 407
BssECI CCNNGG 2 cut(s) 26, 64
BssMI GATC 7 cut(s) 182, 208, 227, 311, 670, 736, 778
BssT1I CCWWGG 1 cut(s) 64
Bst2UI CCWGG 2 cut(s) 27, 531
Bst4CI ACNGT 3 cut(s) 498, 572, 695
BstAFI CTTAAG 1 cut(s) 19
BstC8I GCNNGC 4 cut(s) 52, 432, 656, 723
BstDEI CTNAG 2 cut(s) 460, 641
BstDSI CCRYGG 1 cut(s) 64
BstF5I GGATG 3 cut(s) 38, 601, 739
BstKTI GATC 7 cut(s) 185, 211, 230, 314, 673, 739, 781
BstMAI GTCTC 2 cut(s) 317, 658
BstMBI GATC 7 cut(s) 182, 208, 227, 311, 670, 736, 778
BstMWI GCNNNNNNNGC 2 cut(s) 337, 827
BstNI CCWGG 2 cut(s) 27, 531
BstSCI CCNGG 2 cut(s) 25, 529
BstSFI CTRYAG 3 cut(s) 190, 219, 618
BstV1I GCAGC 2 cut(s) 205, 852
BstX2I RGATCY 1 cut(s) 227
BstYI RGATCY 1 cut(s) 227
BsuI GTATCC 1 cut(s) 634
BsuRI GGCC 3 cut(s) 25, 654, 721
BtgI CCRYGG 1 cut(s) 64
BtsCI GGATG 3 cut(s) 38, 601, 739
BtsIMutI CAGTG 2 cut(s) 638, 802
BveI ACCTGC 2 cut(s) 183, 271
Cac8I GCNNGC 4 cut(s) 52, 432, 656, 723
Cfr13I GGNCC 4 cut(s) 260, 465, 652, 719
CviAII CATG 1 cut(s) 65
DdeI CTNAG 2 cut(s) 460, 641
DpnI GATC 7 cut(s) 184, 210, 229, 313, 672, 738, 780
DpnII GATC 7 cut(s) 182, 208, 227, 311, 670, 736, 778
DraI TTTAAA 1 cut(s) 580
DraIII CACNNNGTG 1 cut(s) 644
DriI GACNNNNNGTC 1 cut(s) 238
Eam1105I GACNNNNNGTC 1 cut(s) 238
Eco130I CCWWGG 1 cut(s) 64
Eco31I GGTCTC 1 cut(s) 658
Eco47I GGWCC 2 cut(s) 260, 465
EcoO109I RGGNCCY 1 cut(s) 652
EcoRI GAATTC 1 cut(s) 515
EcoRII CCWGG 2 cut(s) 25, 529
EcoT14I CCWWGG 1 cut(s) 64
ErhI CCWWGG 1 cut(s) 64
FaeI CATG 1 cut(s) 68
FaqI GGGAC 4 cut(s) 129, 132, 478, 581
FatI CATG 1 cut(s) 64
FauI CCCGC 1 cut(s) 814
FauNDI CATATG 1 cut(s) 445
FbaI TGATCA 2 cut(s) 736, 778
Fnu4HI GCNGC 2 cut(s) 219, 866
FokI GGATG 3 cut(s) 45, 588, 726
Fsp4HI GCNGC 2 cut(s) 219, 866
FspBI CTAG 2 cut(s) 416, 831
GluI GCNGC 2 cut(s) 219, 866
GsuI CTGGAG 1 cut(s) 75
HaeIII GGCC 3 cut(s) 25, 654, 721
HapII CCGG 1 cut(s) 668
Hin1II CATG 1 cut(s) 68
HindIII AAGCTT 1 cut(s) 48
HinfI GANTC 1 cut(s) 325
HpaII CCGG 1 cut(s) 668
HphI GGTGA 1 cut(s) 194
Hpy166II GTNNAC 1 cut(s) 260
Hpy188I TCNGA 3 cut(s) 232, 615, 675
Hpy188III TCNNGA 3 cut(s) 243, 416, 776
Hpy8I GTNNAC 1 cut(s) 260
HpyAV CCTTC 1 cut(s) 381
HpyCH4III ACNGT 3 cut(s) 498, 572, 695
HpyF10VI GCNNNNNNNGC 2 cut(s) 337, 827
HpyF3I CTNAG 2 cut(s) 460, 641
Hsp92II CATG 1 cut(s) 68
Ksp22I TGATCA 2 cut(s) 736, 778
Kzo9I GATC 7 cut(s) 182, 208, 227, 311, 670, 736, 778
LmnI GCTCC 3 cut(s) 94, 173, 834
Lsp1109I GCAGC 2 cut(s) 205, 852
LweI GCATC 1 cut(s) 339
MaeI CTAG 2 cut(s) 416, 831
MaeIII GTNAC 3 cut(s) 644, 744, 797
MalI GATC 7 cut(s) 184, 210, 229, 313, 672, 738, 780
MboI GATC 7 cut(s) 182, 208, 227, 311, 670, 736, 778
MboII GAAGA 1 cut(s) 750
MflI RGATCY 1 cut(s) 227
MluCI AATT 5 cut(s) 123, 515, 713, 731, 858
MlyI GAGTC 1 cut(s) 319
MnlI CCTC 5 cut(s) 218, 246, 447, 640, 811
MseI TTAA 6 cut(s) 20, 105, 198, 557, 579, 752
MspA1I CMGCKG 1 cut(s) 865
MspCI CTTAAG 1 cut(s) 19
MspI CCGG 1 cut(s) 668
MspR9I CCNGG 2 cut(s) 27, 531
MvaI CCWGG 2 cut(s) 27, 531
MwoI GCNNNNNNNGC 2 cut(s) 337, 827
NcoI CCATGG 1 cut(s) 64
NdeI CATATG 1 cut(s) 445
NdeII GATC 7 cut(s) 182, 208, 227, 311, 670, 736, 778
NlaIII CATG 1 cut(s) 68
NlaIV GGNNCC 4 cut(s) 169, 369, 405, 466
NmuCI GTSAC 2 cut(s) 644, 797
PkrI GCNGC 2 cut(s) 220, 867
PleI GAGTC 1 cut(s) 319
PpsI GAGTC 1 cut(s) 319
PsiI TTATAA 1 cut(s) 483
Psp6I CCWGG 2 cut(s) 25, 529
PspGI CCWGG 2 cut(s) 25, 529
PspN4I GGNNCC 4 cut(s) 169, 369, 405, 466
PspPI GGNCC 4 cut(s) 260, 465, 652, 719
PsrI GAACNNNNNNTAC 2 cut(s) 838, 870
PstI CTGCAG 3 cut(s) 194, 223, 622
PsuI RGATCY 1 cut(s) 227
PvuII CAGCTG 1 cut(s) 865
SaqAI TTAA 6 cut(s) 20, 105, 198, 557, 579, 752
SatI GCNGC 2 cut(s) 219, 866
Sau3AI GATC 7 cut(s) 182, 208, 227, 311, 670, 736, 778
Sau96I GGNCC 4 cut(s) 260, 465, 652, 719
SchI GAGTC 1 cut(s) 319
ScrFI CCNGG 2 cut(s) 27, 531
SfaNI GCATC 1 cut(s) 339
SfcI CTRYAG 3 cut(s) 190, 219, 618
SinI GGWCC 2 cut(s) 260, 465
SmlI CTYRAG 2 cut(s) 19, 360
SmoI CTYRAG 2 cut(s) 19, 360
Sse9I AATT 5 cut(s) 123, 515, 713, 731, 858
SsiI CCGC 2 cut(s) 329, 821
SspI AATATT 1 cut(s) 679
SspMI CTAG 2 cut(s) 416, 831
StyD4I CCNGG 2 cut(s) 25, 529
StyI CCWWGG 1 cut(s) 64
TaaI ACNGT 3 cut(s) 498, 572, 695
TaqI TCGA 1 cut(s) 127
TaqII GACCGA 1 cut(s) 482
TasI AATT 5 cut(s) 123, 515, 713, 731, 858
Tru1I TTAA 6 cut(s) 20, 105, 198, 557, 579, 752
Tru9I TTAA 6 cut(s) 20, 105, 198, 557, 579, 752
TscAI CASTG 2 cut(s) 645, 802
TseFI GTSAC 2 cut(s) 644, 797
TseI GCWGC 2 cut(s) 218, 865
Tsp45I GTSAC 2 cut(s) 644, 797
TspDTI ATGAA 1 cut(s) 528
TspGWI ACGGA 2 cut(s) 228, 732
TspRI CASTG 2 cut(s) 645, 802
Vha464I CTTAAG 1 cut(s) 19
VpaK11BI GGWCC 2 cut(s) 260, 465
XapI RAATTY 3 cut(s) 515, 713, 731
XbaI TCTAGA 1 cut(s) 415
XspI CTAG 2 cut(s) 416, 831
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.