MD14G1165100.v1.1

zinc finger CCCH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr14
OG0000602
Physical Location & Seq
Reverse (-)
25892676 .. 25896792
4117 bp
Loading structure...
UTR
Exon/CDS
Intron
MD14G1165100.v1.1.491

Sequence Viewer

Length: 1554 bp
ATGTTTTTTTCAGCGGCGCGTATTGCCCTACCTGTGTCAGTGTCAGTGCTGGTATTAATTTATCAGTACTTCAAATCTGGACGGAAATCGGAATTTTCTGAAGGCGTCGAAGTTCCCCTAAATCCGACGACGTCTGTTCCGTCACCTGCGCCGTCCGATCTTGAGCGTGAAATCCTTGATTGGATTCGGACACTCGACCCCGATATGCTCAATAAGATTAGGAATCTCGACCCTGCCTTCCTCGATGTGATTCGGAACTTCGACCCTGCTTTCTCTTCGGAAATTTCTGAAAGAGTCGACGGTCCTCTAAATCCGCCGTCTGTTTCGTCACCTGCGCCATCCGATCTCGATTCTGAAATCCTTGATTGGATTCGGGAACTCCACCCCGCCGTGCTTGATGAGCTTCAGTCTGACCCCGCCTTCCTCGATGAGATTCGGAACTTCGATCCTTCCATCATTGATCAGATTCGGATATTGAGTTTGAAGGAAAAGGAGGATAAAGAAGAAGAAGAGAAGAGGAGAAAGTGTGAAAAGGAAAAAGAAGAAGAAGAGAAGAGGAGAAAGTGTGAAAAGGAAAAAGAAGAAGAAGAGAAGAGGAGAGAGTGTGAAAAGGAAAATGAGAAGGAGAGAGAGAGGGAAAGCGGCGGCGGAGGGAATGAGAATGGCGGTGAGGTGGATAAGAAGGTTGTTGAGGAGAGTAGCAGAAGGAATCAGTACCCATTGAGGCCCGAAGCTAAAGACTGTTCGTACTATCTGAAGACTGGCAATTGTAAGTTCGGATCGAATTGCAAGTTTAATCACCCTCGGATAAGGAAAAACAAGCAGGTGTCTAAGGACAAGGCAAAGCTGAGAGAAGAGTTGGAAAAGCAGCAAGACCAGGCCGAAAGCAAGTACTACATCAGCCCGGGACGACGTGTAGGGGTACCTTCTGTAGCTCCAGCTCTGGAACTTAACTTTTCGGGCCTGCCAATTCGTCCGGGGGAGAAAGATTGTCCCTACTATATGCGAACTGGCACCTGCAAGTATGAAACAAACTGCAAGTTTAACCACCCTGATCCTACAGCTGCCGGAGAATCTCGCCCGCAATCCGCATATGGTAATGGTAGGCCTGCATCATCACAAGGTCTGCCAAAATCTCAAGACATATATTCTGAAACTACAGAATGGAATGGTTATCAGGCTCCAGCATATCTACCACATAGAGGCATGCCTGCACCTCCACCTCCGCCATATGTTATGAACAACTCAGTGACTGAAACGAACTACTACGGACAATATGCACAGCAGAAGCAAGCTGAAGAACTTCCAGAACGACCTGGGCAACCTGTTTGCTTCTATTTCGCTCAAACAGGGGATTGTATTAATAAATCTAATTGCCAATATCACCATCCAAAAAATCATACTCCAGCGACCCCCTCATGTACACTCAATGACAGGGGCCTCCCTTTAAGACCAGGTCAGAACATTTGCACACAGTACAGCCGCTATGGCATTTGCAGTTCTGGGCCAACCTGTAGATTTGACCATCCGTCATTATCAGGTTCCTTTCTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-CCCH zf-CCCH_2

Protein Analysis

518

Amino Acids

58.71

Weight (kDa)

5.68

Isoelectric Point (pI)

65.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-CCCH PF00642 246 - 269 1.8e-09 Zinc finger C-x8-C-x5-C-x3-H type (and similar)
zf-CCCH PF00642 327 - 351 3.1e-09 Zinc finger C-x8-C-x5-C-x3-H type (and similar)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000602)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G48195 AT3G48440 AT5G63260 AT5G63260
fragaria_vesca FvH4_5g07100 FvH4_5g07100 FvH4_5g07100 FvH4_5g07100 FvH4_5g07100 FvH4_5g07100 FvH4_5g07100
malus_domestica MD06G1158800.v1.1 MD06G1159000.v1.1 MD06G1159200.v1.1 MD14G1165100.v1.1 MD14G1165300.v1.1 MD14G1165400.v1.1 MD14G1165500.v1.1
prunus_persica Prupe.5G158300_v2.0.a1 Prupe.5G158300_v2.0.a1 Prupe.5G158400_v2.0.a1 Prupe.5G158400_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158600_v2.0.a1 Prupe.5G158700_v2.0.a1 Prupe.5G158800_v2.0.a1 Prupe.5G158900_v2.0.a1 Prupe.5G159000_v2.0.a1 Prupe.5G159100_v2.0.a1 Prupe.5G159100_v2.0.a1
pyrus_communis pycom02g00910 pycom06g14200 pycom14g13760 pycom14g13790 pycom14g13800
rosa_chinensis RchiOBHm_Chr5g0019351 RchiOBHm_Chr5g0022771 RchiOBHm_Chr7g0191441 RchiOBHm_Chr7g0191531
rosa_laevigata RLG00000004449 RLG00000032440
rosa_multiflora Rmu_sc0001809.1_g000062 Rmu_sc0005292.1_g000027
rosa_roxburghii Rroxscaffold_1G00074260 Rroxscaffold_6G00390280 Rroxscaffold_7G00168660
rosa_rugosa Rorug05G0049600 Rorug05G0049700 Rorug05G0049800 Rorug06G0510400
rosa_samantha Rh5CG151400 Rh5DG140300 Rh7AG118400 Rh7BG120400 Rh7CG123200 Rh7DG121300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 4 cut(s) 154, 340, 814, 1025
AatII GACGTC 1 cut(s) 134
Acc36I ACCTGC 4 cut(s) 154, 340, 814, 1025
Acc65I GGTACC 1 cut(s) 922
AccB1I GGYRCC 2 cut(s) 922, 1013
AccI GTMKAC 1 cut(s) 297
AccII CGCG 1 cut(s) 19
AclWI GGATC 3 cut(s) 440, 787, 1049
AcsI RAATTY 2 cut(s) 92, 282
AcuI CTGAAG 4 cut(s) 120, 389, 776, 1317
AcyI GRCGYC 2 cut(s) 105, 131
AfaI GTAC 7 cut(s) 68, 716, 749, 893, 924, 1423, 1478
AfiI CCNNNNNNNGG 1 cut(s) 1202
AflIII ACRYGT 1 cut(s) 913
AgsI TTSAA 2 cut(s) 73, 484
AhdI GACNNNNNGTC 1 cut(s) 1528
AjiI CACGTC 1 cut(s) 914
AjnI CCWGG 3 cut(s) 876, 1315, 1453
AluBI AGCT 7 cut(s) 403, 734, 847, 935, 941, 1064, 1295
AluI AGCT 7 cut(s) 403, 734, 847, 935, 941, 1064, 1295
AlwI GGATC 3 cut(s) 440, 787, 1049
AlwNI CAGNNNCTG 1 cut(s) 1253
Ama87I CYCGRG 1 cut(s) 904
AoxI GGCC 6 cut(s) 725, 879, 961, 1106, 1438, 1505
ApeKI GCWGC 2 cut(s) 868, 1064
ApoI RAATTY 2 cut(s) 92, 282
AseI ATTAAT 2 cut(s) 56, 1362
Asp700I GAANNNNTTC 1 cut(s) 1302
Asp718I GGTACC 1 cut(s) 922
AspLEI GCGC 3 cut(s) 19, 151, 337
AspS9I GGNCC 5 cut(s) 302, 726, 961, 1438, 1505
AsuC2I CCSGG 3 cut(s) 905, 906, 978
AsuHPI GGTGA 5 cut(s) 135, 321, 680, 791, 1376
AvaI CYCGRG 1 cut(s) 904
AvaII GGWCC 1 cut(s) 302
BanI GGYRCC 2 cut(s) 922, 1013
BbsI GAAGAC 1 cut(s) 764
BbvI GCAGC 2 cut(s) 880, 1051
BccI CCATC 4 cut(s) 346, 461, 1395, 1533
BceAI ACGGC 3 cut(s) 136, 301, 374
BciT130I CCWGG 3 cut(s) 878, 1317, 1455
BclI TGATCA 1 cut(s) 460
BcnI CCSGG 3 cut(s) 905, 906, 978
BfmI CTRYAG 4 cut(s) 930, 1059, 1158, 1513
BfuAI ACCTGC 4 cut(s) 154, 340, 814, 1025
BglI GCCNNNNNGGC 1 cut(s) 1488
BisI GCNGC 6 cut(s) 15, 643, 646, 869, 1065, 1483
BlsI GCNGC 6 cut(s) 16, 644, 647, 870, 1066, 1484
BmcAI AGTACT 2 cut(s) 68, 893
Bme1390I CCNGG 6 cut(s) 878, 905, 906, 978, 1317, 1455
Bme18I GGWCC 1 cut(s) 302
BmeRI GACNNNNNGTC 1 cut(s) 1528
BmeT110I CYCGRG 1 cut(s) 904
BmgBI CACGTC 1 cut(s) 914
BmgT120I GGNCC 5 cut(s) 302, 726, 961, 1438, 1505
BmiI GGNNCC 5 cut(s) 924, 1015, 1182, 1439, 1543
BmrFI CCNGG 6 cut(s) 878, 905, 906, 978, 1317, 1455
BmsI GCATC 1 cut(s) 1121
BpiI GAAGAC 1 cut(s) 764
BpmI CTGGAG 3 cut(s) 921, 1167, 1389
BpuEI CTTGAG 2 cut(s) 182, 1122
BpuMI CCSGG 3 cut(s) 905, 906, 978
BsaHI GRCGYC 2 cut(s) 105, 131
BsaJI CCNNGG 4 cut(s) 803, 904, 977, 1316
BsaXI ACNNNNNCTCC 6 cut(s) 511, 541, 550, 580, 589, 619
Bsc4I CCNNNNNNNGG 1 cut(s) 1202
Bse1I ACTGG 2 cut(s) 766, 1015
BseBI CCWGG 3 cut(s) 878, 1317, 1455
BseDI CCNNGG 4 cut(s) 803, 904, 977, 1316
BseGI GGATG 3 cut(s) 338, 1387, 1525
BseLI CCNNNNNNNGG 1 cut(s) 1202
BseMII CTCAG 2 cut(s) 839, 1260
BseNI ACTGG 2 cut(s) 766, 1015
BseRI GAGGAG 4 cut(s) 532, 571, 610, 707
BseXI GCAGC 2 cut(s) 880, 1051
BsgI GTGCAG 1 cut(s) 1197
Bsh1236I CGCG 1 cut(s) 19
BshFI GGCC 6 cut(s) 727, 881, 963, 1108, 1440, 1507
BshNI GGYRCC 2 cut(s) 922, 1013
BsiHKCI CYCGRG 1 cut(s) 904
BsiSI CCGG 3 cut(s) 905, 977, 1068
BslFI GGGAC 2 cut(s) 921, 978
BslI CCNNNNNNNGG 1 cut(s) 1202
BsmFI GGGAC 2 cut(s) 921, 978
BsnI GGCC 6 cut(s) 727, 881, 963, 1108, 1440, 1507
BsoBI CYCGRG 1 cut(s) 904
Bsp1407I TGTACA 1 cut(s) 1421
Bsp143I GATC 6 cut(s) 157, 343, 445, 460, 779, 1054
BspANI GGCC 6 cut(s) 727, 881, 963, 1108, 1440, 1507
BspCNI CTCAG 2 cut(s) 840, 1259
BspFNI CGCG 1 cut(s) 19
BspLI GGNNCC 5 cut(s) 924, 1015, 1182, 1439, 1543
BspMI ACCTGC 4 cut(s) 154, 340, 814, 1025
BspPI GGATC 3 cut(s) 440, 787, 1049
BspT107I GGYRCC 2 cut(s) 922, 1013
BsrGI TGTACA 1 cut(s) 1421
BsrI ACTGG 2 cut(s) 766, 1015
BssECI CCNNGG 4 cut(s) 803, 904, 977, 1316
BssMI GATC 6 cut(s) 157, 343, 445, 460, 779, 1054
BssNI GRCGYC 2 cut(s) 105, 131
Bst2UI CCWGG 3 cut(s) 878, 1317, 1455
Bst4CI ACNGT 3 cut(s) 302, 743, 1476
Bst6I CTCTTC 8 cut(s) 280, 504, 509, 543, 548, 582, 587, 849
BstACI GRCGYC 2 cut(s) 105, 131
BstAUI TGTACA 1 cut(s) 1421
BstC8I GCNNGC 6 cut(s) 965, 1082, 1110, 1208, 1212, 1293
BstDEI CTNAG 3 cut(s) 831, 848, 1246
BstF5I GGATG 3 cut(s) 338, 1387, 1525
BstFNI CGCG 1 cut(s) 19
BstHHI GCGC 3 cut(s) 19, 151, 337
BstKTI GATC 6 cut(s) 160, 346, 448, 463, 782, 1057
BstMBI GATC 6 cut(s) 157, 343, 445, 460, 779, 1054
BstMWI GCNNNNNNNGC 3 cut(s) 23, 400, 1488
BstNI CCWGG 3 cut(s) 878, 1317, 1455
BstNSI RCATGY 1 cut(s) 1210
BstSCI CCNGG 6 cut(s) 876, 903, 904, 976, 1315, 1453
BstSFI CTRYAG 4 cut(s) 930, 1059, 1158, 1513
BstUI CGCG 1 cut(s) 19
BstV1I GCAGC 2 cut(s) 880, 1051
BstV2I GAAGAC 1 cut(s) 764
BsuRI GGCC 6 cut(s) 727, 881, 963, 1108, 1440, 1507
BtrI CACGTC 1 cut(s) 914
BtsCI GGATG 3 cut(s) 338, 1387, 1525
BtsIMutI CAGTG 3 cut(s) 45, 51, 1254
BveI ACCTGC 4 cut(s) 154, 340, 814, 1025
Cac8I GCNNGC 6 cut(s) 965, 1082, 1110, 1208, 1212, 1293
CaiI CAGNNNCTG 1 cut(s) 1253
CfoI GCGC 3 cut(s) 19, 151, 337
Cfr13I GGNCC 5 cut(s) 302, 726, 961, 1438, 1505
Cfr9I CCCGGG 1 cut(s) 904
CseI GACGC 1 cut(s) 94
CsiI ACCWGGT 1 cut(s) 1453
Csp6I GTAC 7 cut(s) 67, 715, 748, 892, 923, 1422, 1477
CviAII CATG 2 cut(s) 1207, 1419
CviQI GTAC 7 cut(s) 67, 715, 748, 892, 923, 1422, 1477
DdeI CTNAG 3 cut(s) 831, 848, 1246
DpnI GATC 6 cut(s) 159, 345, 447, 462, 781, 1056
DpnII GATC 6 cut(s) 157, 343, 445, 460, 779, 1054
DriI GACNNNNNGTC 1 cut(s) 1528
Eam1104I CTCTTC 8 cut(s) 280, 504, 509, 543, 548, 582, 587, 849
Eam1105I GACNNNNNGTC 1 cut(s) 1528
EarI CTCTTC 8 cut(s) 280, 504, 509, 543, 548, 582, 587, 849
EciI GGCGGA 3 cut(s) 303, 663, 1215
Eco147I AGGCCT 1 cut(s) 1108
Eco47I GGWCC 1 cut(s) 302
Eco57I CTGAAG 4 cut(s) 120, 389, 776, 1317
Eco88I CYCGRG 1 cut(s) 904
EcoO109I RGGNCCY 1 cut(s) 1438
EcoRII CCWGG 3 cut(s) 876, 1315, 1453
FaeI CATG 2 cut(s) 1210, 1422
FaqI GGGAC 2 cut(s) 921, 978
FatI CATG 2 cut(s) 1206, 1418
FauI CCCGC 3 cut(s) 394, 424, 1089
FauNDI CATATG 2 cut(s) 1093, 1231
FbaI TGATCA 1 cut(s) 460
FblI GTMKAC 1 cut(s) 297
Fnu4HI GCNGC 6 cut(s) 15, 643, 646, 869, 1065, 1483
FokI GGATG 3 cut(s) 325, 1374, 1512
Fsp4HI GCNGC 6 cut(s) 15, 643, 646, 869, 1065, 1483
GlaI GCGC 3 cut(s) 18, 150, 336
GluI GCNGC 6 cut(s) 15, 643, 646, 869, 1065, 1483
GsuI CTGGAG 3 cut(s) 921, 1167, 1389
HaeIII GGCC 6 cut(s) 727, 881, 963, 1108, 1440, 1507
HapII CCGG 3 cut(s) 905, 977, 1068
HgaI GACGC 1 cut(s) 94
HhaI GCGC 3 cut(s) 19, 151, 337
Hin1I GRCGYC 2 cut(s) 105, 131
Hin1II CATG 2 cut(s) 1210, 1422
Hin6I GCGC 3 cut(s) 17, 149, 335
HinP1I GCGC 3 cut(s) 17, 149, 335
HincII GTYRAC 1 cut(s) 298
HindII GTYRAC 1 cut(s) 298
HpaII CCGG 3 cut(s) 905, 977, 1068
HphI GGTGA 5 cut(s) 135, 321, 680, 791, 1376
Hpy166II GTNNAC 2 cut(s) 298, 1424
Hpy188III TCNNGA 8 cut(s) 78, 161, 227, 347, 374, 944, 1139, 1307
Hpy8I GTNNAC 2 cut(s) 298, 1424
Hpy99I CGWCG 5 cut(s) 110, 130, 133, 302, 915
HpyAV CCTTC 9 cut(s) 95, 247, 430, 459, 478, 616, 676, 699, 936
HpyCH4III ACNGT 3 cut(s) 302, 743, 1476
HpyCH4IV ACGT 2 cut(s) 131, 913
HpyCH4V TGCA 8 cut(s) 789, 1020, 1038, 1112, 1214, 1280, 1470, 1497
HpyF10VI GCNNNNNNNGC 3 cut(s) 23, 400, 1488
HpyF3I CTNAG 3 cut(s) 831, 848, 1246
HpySE526I ACGT 2 cut(s) 131, 913
Hsp92I GRCGYC 2 cut(s) 105, 131
Hsp92II CATG 2 cut(s) 1210, 1422
HspAI GCGC 3 cut(s) 17, 149, 335
KpnI GGTACC 1 cut(s) 926
Ksp22I TGATCA 1 cut(s) 460
Kzo9I GATC 6 cut(s) 157, 343, 445, 460, 779, 1054
LmnI GCTCC 2 cut(s) 940, 1186
Lsp1109I GCAGC 2 cut(s) 880, 1051
LweI GCATC 1 cut(s) 1121
MabI ACCWGGT 1 cut(s) 1453
MaeII ACGT 2 cut(s) 131, 913
MaeIII GTNAC 3 cut(s) 141, 327, 1249
MalI GATC 6 cut(s) 159, 345, 447, 462, 781, 1056
MboI GATC 6 cut(s) 157, 343, 445, 460, 779, 1054
MfeI CAATTG 1 cut(s) 766
MluCI AATT 7 cut(s) 57, 92, 282, 766, 784, 969, 1372
MlyI GAGTC 1 cut(s) 303
MmeI TCCRAC 2 cut(s) 149, 840
MroXI GAANNNNTTC 1 cut(s) 1302
MseI TTAA 6 cut(s) 56, 795, 951, 1044, 1362, 1448
MspA1I CMGCKG 2 cut(s) 14, 1064
MspI CCGG 3 cut(s) 905, 977, 1068
MspR9I CCNGG 6 cut(s) 878, 905, 906, 978, 1317, 1455
MunI CAATTG 1 cut(s) 766
MvaI CCWGG 3 cut(s) 878, 1317, 1455
MvnI CGCG 1 cut(s) 19
MwoI GCNNNNNNNGC 3 cut(s) 23, 400, 1488
NciI CCSGG 3 cut(s) 905, 906, 978
NdeI CATATG 2 cut(s) 1093, 1231
NdeII GATC 6 cut(s) 157, 343, 445, 460, 779, 1054
NlaIII CATG 2 cut(s) 1210, 1422
NlaIV GGNNCC 5 cut(s) 924, 1015, 1182, 1439, 1543
NmuCI GTSAC 3 cut(s) 141, 327, 1249
NspI RCATGY 1 cut(s) 1210
PaeI GCATGC 1 cut(s) 1210
PaqCI CACCTGC 4 cut(s) 154, 340, 814, 1025
PceI AGGCCT 1 cut(s) 1108
PcsI WCGNNNNNNNCGW 1 cut(s) 137
PdmI GAANNNNTTC 1 cut(s) 1302
PfeI GAWTC 9 cut(s) 184, 223, 250, 350, 370, 433, 466, 709, 1073
PflFI GACNNNGTC 2 cut(s) 130, 1455
PkrI GCNGC 6 cut(s) 16, 644, 647, 870, 1066, 1484
PleI GAGTC 1 cut(s) 302
PpsI GAGTC 1 cut(s) 302
PshBI ATTAAT 2 cut(s) 56, 1362
Psp6I CCWGG 3 cut(s) 876, 1315, 1453
PspGI CCWGG 3 cut(s) 876, 1315, 1453
PspN4I GGNNCC 5 cut(s) 924, 1015, 1182, 1439, 1543
PspPI GGNCC 5 cut(s) 302, 726, 961, 1438, 1505
PstNI CAGNNNCTG 1 cut(s) 1253
PsyI GACNNNGTC 2 cut(s) 130, 1455
PvuII CAGCTG 1 cut(s) 1064
RsaI GTAC 7 cut(s) 68, 716, 749, 893, 924, 1423, 1478
RsaNI GTAC 7 cut(s) 67, 715, 748, 892, 923, 1422, 1477
SalI GTCGAC 1 cut(s) 296
SaqAI TTAA 6 cut(s) 56, 795, 951, 1044, 1362, 1448
SatI GCNGC 6 cut(s) 15, 643, 646, 869, 1065, 1483
Sau3AI GATC 6 cut(s) 157, 343, 445, 460, 779, 1054
Sau96I GGNCC 5 cut(s) 302, 726, 961, 1438, 1505
ScaI AGTACT 2 cut(s) 68, 893
SchI GAGTC 1 cut(s) 303
ScrFI CCNGG 6 cut(s) 878, 905, 906, 978, 1317, 1455
SexAI ACCWGGT 1 cut(s) 1453
SfaNI GCATC 1 cut(s) 1121
SfcI CTRYAG 4 cut(s) 930, 1059, 1158, 1513
SinI GGWCC 1 cut(s) 302
SmaI CCCGGG 1 cut(s) 906
SmlI CTYRAG 2 cut(s) 161, 1137
SmoI CTYRAG 2 cut(s) 161, 1137
SphI GCATGC 1 cut(s) 1210
Sse9I AATT 7 cut(s) 57, 92, 282, 766, 784, 969, 1372
SseBI AGGCCT 1 cut(s) 1108
StuI AGGCCT 1 cut(s) 1108
StyD4I CCNGG 6 cut(s) 876, 903, 904, 976, 1315, 1453
TaaI ACNGT 3 cut(s) 302, 743, 1476
TaiI ACGT 2 cut(s) 134, 916
TasI AATT 7 cut(s) 57, 92, 282, 766, 784, 969, 1372
TatI WGTACW 4 cut(s) 66, 891, 1421, 1476
TauI GCSGC 4 cut(s) 17, 645, 648, 1485
TfiI GAWTC 9 cut(s) 184, 223, 250, 350, 370, 433, 466, 709, 1073
Tru1I TTAA 6 cut(s) 56, 795, 951, 1044, 1362, 1448
Tru9I TTAA 6 cut(s) 56, 795, 951, 1044, 1362, 1448
TscAI CASTG 3 cut(s) 45, 51, 1254
TseFI GTSAC 3 cut(s) 141, 327, 1249
TseI GCWGC 2 cut(s) 868, 1064
Tsp45I GTSAC 3 cut(s) 141, 327, 1249
TspDTI ATGAA 2 cut(s) 1041, 1253
TspGWI ACGGA 4 cut(s) 97, 129, 1284, 1518
TspMI CCCGGG 1 cut(s) 904
TspRI CASTG 3 cut(s) 45, 51, 1254
Tth111I GACNNNGTC 2 cut(s) 130, 1455
VpaK11BI GGWCC 1 cut(s) 302
VspI ATTAAT 2 cut(s) 56, 1362
XapI RAATTY 2 cut(s) 92, 282
XceI RCATGY 1 cut(s) 1210
XmaI CCCGGG 1 cut(s) 904
XmiI GTMKAC 1 cut(s) 297
XmnI GAANNNNTTC 1 cut(s) 1302
ZraI GACGTC 1 cut(s) 132
ZrmI AGTACT 2 cut(s) 68, 893
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.