Prupe.5G158500_v2.0.a1

zinc finger CCCH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0000602
Physical Location & Seq
Reverse (-)
14051400 .. 14058640
7241 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G158500.25

Sequence Viewer

Length: 2736 bp
ATGTTGACAGCTCCCATCGGCCTCCCAAATCCCGACGTTCCGCCAAATGCTGAACTCTCTGATCTCGATCTTGCCATCCTTGAAGAGATTCGGAAACTCGATGCCCTCCTTGATAAAATTCGGAAACTCGGCCCCGCCCTGCTTGATAAGATTCGAAAATTCGACCCAGACGTCCTTGATGAGCTTCGGAAAATCGACCCTGTCCTCCTTGATGGCCTTCGGAAAATCCACCCGACCCTCCTTGACGAGCTTCGCAAAGTCGACTCCGCCGTCCTCCAAGAGATGCAGCTCGAGCCGGCTGAATGGGATCCTGTCATCATTGGTGCGATTCGTAAATTGTATTTGAAATTAAGGGAGGAAGATGAAGAAGTGGCCGAGAGGAGTACTTGTAGCGGGCGCCAAACTGCAAAAGAAAACGAAAATGGAAACCAGAAGACACAGAGCGAAGAGACGGATGGAGGAGGAGGAGGAGAAAATAAGAATGACAATGGCGGTGAGGTGATGAAGATTGGTGAAGAAAGAAGCAGAAGCCAGCATTATCCAGTGAGGCCTGAAGCTGGAGAAGGAAAAACAGGAAGGAAAAACAGGAAAAACAGGAAAAACAGGAAAAACAATCAGAATTACTTCAGGTCAGGAGGACAGCATCCAAATCTCTACGCTTCCCCAAATCCAGGTAATGACGACGTGCTTTCCCCAAATCCTGGTAAAGTCGACTCGGTCCTGCAGGTCGACCCTACTGAATTGGATCCTGCCATCATTGATGCAATTTGTAAATTTTCTTTGAAAGGAAAGGAGGAAGGTGAACAAGAGGTCGAGGTTAGTTGTAGTACGCCAGAAACTGAAATCAGAAACAAAAATGGAAACAAGAGACAGAGTGAAGAGAGGGATGGAGGAGGAGGAGTAGAAAATAAGAATGAGAATGGTGGTCAGGTGGAGAAGAAGGTTGATGATGGAAGAAGTAGAAGACATCATTACCCAGTGAGGCCTCCTGGAGCTGGAGACTCTTCGCATAATCTAAAGACTGGGACTCATAAGTTTGGGTCCAATTGCAAGTTTAACCGCACTCGTGGAAGCAAAAACAATCAGGTGTCTAAGGACAAGATGAAGGAAAGGGAAGGGTTGGCAGAGAAGCCAGGCCAGACAGAATGCAAGAATTACTTCAGGTCAGGAGGACAACGTCAAAATCGCTACGCTCCCCAAAATCCCGGTGACAATGACTCATTTTCCCCAAATTCCGACGTTTCCCCAAATCCCGGTAATGACGGCGTCCTTCCCCAAAATCCAGGTAAAGACGACATCCTTCCCCAAAATCACGGTGACACTGACTGCGATCTTGCCACCCTTAGGGAGATTCTGAGACATAAGACTGCCCTCCTTGGTATTATTCGGAAACTTGACGCTGGCCTCTTTGGTGATATTCAAAAAATCGACCCCGCCGTCCTCCATGAGATGCAGGCCGACCCTGCTGAATGGGATCCTGCCATCATTGATGCGATTTGTAAATTGTCTTTGGAAGAAAAGGATGAAAGTGAAGAAGAGGTCGAGGTTAGTTGTGGTGGGCCAGAAACTGAAATCAGAAACGAGAATAGATACAAGACACAGAGCAAAGAGAGGGATGGAGGAGGAGGAGAAAATAAGAATGAGAATGGTGGTGAGGTGCAGAAGAAGCTTGATGAAGAAAGAAGCAGAAGACATCATTATCCAGTGAGGCCTCCTGGGGCTGGAGACTCTTCGCATAACCTAAAGACTGGGACTCATCAGTTTGGGTCCAATTGCAAGTTTAACCTCACTCATAGAAGCAAAAACAATCAGGTTTCAAAGAACAAGATGAAGGAAAGGGAAGGGTTGGCAGAGAAGCCAGGCAAGACAGAATTCAAGGTTTCAAAGAACAAGATGAAGGAAAGGGAAGGGTTGGCAGAGAAGCCAGGCAAGACAGAATGCAAGGTTTCAAAGAACAAGATGAAGGAAAGGGAAGGGTTGGCAGAGAAGCCAGGCAAGACAGAATTCAAGAATTACTTCAGGTCAGGAGGACGTAAATCCGGAAATGCTTGTGCTTTAAACCCCAGAAGAGGGGAAGCTTCTGTAGCTCCAATTCTAGAAAACTTTATGGGCCTGCCAATTCGTCCGGGGGAGAAAGACTGTTCCTGCTATATGCGAACTCTCTCCTGTATGTACGGAACGAAGTGCAGGTTTAATCACCCTGATCCTACACCTGCAGGAGAATCTGACCCCCCATCTGGAAATGGTAATGGTGGACTTGCATCATTACAAGGTGCATCGTCAGCAACAGCAGCACGATGGTATGCACCAATATCATTGAACAATGCTCCACTTTATGAGCCAATAATGATTCCGCCATCGCAAGAGTTTCCTTCGCAAAATACAGAATGGAATGGTTATCAGGCTACAGAAAGAAGCATGCCTGCACCTCCACCATATGTCATGAACCACTCAGTGACTGAAACCAACACCTATGAACAATATCCACAGCAGAAGCAAGTTCAAGAATTCCCAGAGCGACCTGGGCAACCTGTTTGCTTGTACTTCTCAAGATCAGGGGATTGCAAGCATAAATCTAATTGCAAATATCACCATCCAAAAAATCAGACTGCAGTGCCCCCCTCATGTGACAAGGGCCTGCTTTTGAGACCAGGTCAGAACATCTGCACACAATACAGTGCGTATGGCATTTGCAATTCTGGGCCAGCTTGTAAATTTAACCATCCGTCATTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-CCCH zf-CCCH_2

Protein Analysis

912

Amino Acids

100.96

Weight (kDa)

7.49

Isoelectric Point (pI)

56.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000602)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G48195 AT3G48440 AT5G63260 AT5G63260
fragaria_vesca FvH4_5g07100 FvH4_5g07100 FvH4_5g07100 FvH4_5g07100 FvH4_5g07100 FvH4_5g07100 FvH4_5g07100
malus_domestica MD06G1158800.v1.1 MD06G1159000.v1.1 MD06G1159200.v1.1 MD14G1165100.v1.1 MD14G1165300.v1.1 MD14G1165400.v1.1 MD14G1165500.v1.1
prunus_persica Prupe.5G158300_v2.0.a1 Prupe.5G158300_v2.0.a1 Prupe.5G158400_v2.0.a1 Prupe.5G158400_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158600_v2.0.a1 Prupe.5G158700_v2.0.a1 Prupe.5G158800_v2.0.a1 Prupe.5G158900_v2.0.a1 Prupe.5G159000_v2.0.a1 Prupe.5G159100_v2.0.a1 Prupe.5G159100_v2.0.a1
pyrus_communis pycom02g00910 pycom06g14200 pycom14g13760 pycom14g13790 pycom14g13800
rosa_chinensis RchiOBHm_Chr5g0019351 RchiOBHm_Chr5g0022771 RchiOBHm_Chr7g0191441 RchiOBHm_Chr7g0191531
rosa_laevigata RLG00000004449 RLG00000032440
rosa_multiflora Rmu_sc0001809.1_g000062 Rmu_sc0005292.1_g000027
rosa_roxburghii Rroxscaffold_1G00074260 Rroxscaffold_6G00390280 Rroxscaffold_7G00168660
rosa_rugosa Rorug05G0049600 Rorug05G0049700 Rorug05G0049800 Rorug06G0510400
rosa_samantha Rh5CG151400 Rh5DG140300 Rh7AG118400 Rh7BG120400 Rh7CG123200 Rh7DG121300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 2221
AasI GACNNNNNNGTC 3 cut(s) 170, 269, 1436
AatII GACGTC 1 cut(s) 174
Acc36I ACCTGC 3 cut(s) 715, 2178, 2221
AccB1I GGYRCC 1 cut(s) 396
AccB7I CCANNNNNTGG 1 cut(s) 701
AccI GTMKAC 3 cut(s) 261, 711, 729
AccIII TCCGGA 1 cut(s) 2039
AciI CCGC 8 cut(s) 41, 135, 267, 393, 492, 1060, 1434, 2354
AclWI GGATC 7 cut(s) 302, 315, 740, 753, 1469, 1482, 2198
AcoI YGGCCR 1 cut(s) 372
AcsI RAATTY 8 cut(s) 117, 158, 773, 1231, 1871, 2003, 2507, 2714
AcuI CTGAAG 4 cut(s) 573, 610, 1144, 2002
AcyI GRCGYC 3 cut(s) 171, 397, 1266
AdeI CACNNNGTG 1 cut(s) 2455
AfaI GTAC 4 cut(s) 385, 829, 2174, 2543
AjiI CACGTC 1 cut(s) 685
Alw26I GTCTC 6 cut(s) 443, 862, 993, 1351, 1719, 2641
AlwI GGATC 7 cut(s) 302, 315, 740, 753, 1469, 1482, 2198
AlwNI CAGNNNCTG 3 cut(s) 839, 1568, 2459
Ama87I CYCGRG 1 cut(s) 290
Aor13HI TCCGGA 1 cut(s) 2039
ApeKI GCWGC 2 cut(s) 286, 2291
ApoI RAATTY 8 cut(s) 117, 158, 773, 1231, 1871, 2003, 2507, 2714
Asp700I GAANNNNTTC 4 cut(s) 87, 623, 1157, 2015
AspLEI GCGC 1 cut(s) 399
AspS9I GGNCC 8 cut(s) 131, 718, 1041, 1559, 1767, 2110, 2635, 2702
AsuC2I CCSGG 3 cut(s) 1206, 1254, 2127
AsuII TTCGAA 1 cut(s) 154
AvaI CYCGRG 1 cut(s) 290
AvaII GGWCC 3 cut(s) 718, 1041, 1767
AxyI CCTNAGG 1 cut(s) 1343
BaeGI GKGCMC 1 cut(s) 2619
BamHI GGATCC 3 cut(s) 307, 745, 1474
BanI GGYRCC 1 cut(s) 396
BauI CACGAG 1 cut(s) 1065
BbsI GAAGAC 3 cut(s) 440, 970, 1696
BbvI GCAGC 2 cut(s) 298, 2303
BceAI ACGGC 3 cut(s) 254, 1279, 1421
BcnI CCSGG 3 cut(s) 1206, 1254, 2127
BcoDI GTCTC 6 cut(s) 443, 862, 993, 1351, 1719, 2641
BfaI CTAG 1 cut(s) 2096
BfmI CTRYAG 5 cut(s) 722, 2082, 2214, 2406, 2610
BfoI RGCGCY 1 cut(s) 400
BfuAI ACCTGC 3 cut(s) 715, 2178, 2221
BisI GCNGC 2 cut(s) 287, 2292
BlsI GCNGC 2 cut(s) 288, 2293
BmcAI AGTACT 1 cut(s) 385
Bme18I GGWCC 3 cut(s) 718, 1041, 1767
BmeT110I CYCGRG 1 cut(s) 290
BmgBI CACGTC 1 cut(s) 685
BmgT120I GGNCC 8 cut(s) 131, 718, 1041, 1559, 1767, 2110, 2635, 2702
BmiI GGNNCC 7 cut(s) 133, 309, 398, 747, 1042, 1476, 1768
BmrI ACTGGG 3 cut(s) 971, 1032, 1758
BmsI GCATC 8 cut(s) 91, 273, 652, 751, 1440, 1480, 2270, 2285
BmuI ACTGGG 3 cut(s) 971, 1032, 1758
BpiI GAAGAC 3 cut(s) 440, 970, 1696
BpmI CTGGAG 4 cut(s) 579, 1011, 1017, 1743
Bpu14I TTCGAA 1 cut(s) 154
BpuEI CTTGAG 1 cut(s) 2533
BpuMI CCSGG 3 cut(s) 1206, 1254, 2127
BsaBI GATNNNNATC 1 cut(s) 66
BsaHI GRCGYC 3 cut(s) 171, 397, 1266
BsaI GGTCTC 1 cut(s) 2641
BsaJI CCNNGG 4 cut(s) 1375, 1715, 2126, 2522
BsaWI WCCGGW 1 cut(s) 2039
BsaXI ACNNNNNCTCC 4 cut(s) 373, 403, 885, 915
Bse118I RCCGGY 1 cut(s) 295
Bse1I ACTGG 5 cut(s) 542, 977, 1027, 1703, 1753
Bse21I CCTNAGG 1 cut(s) 1343
Bse8I GATNNNNATC 1 cut(s) 66
BseAI TCCGGA 1 cut(s) 2039
BseDI CCNNGG 4 cut(s) 1375, 1715, 2126, 2522
BseGI GGATG 9 cut(s) 75, 460, 643, 892, 1296, 1528, 1621, 2593, 2722
BseJI GATNNNNATC 1 cut(s) 66
BseMII CTCAG 2 cut(s) 1346, 2466
BseNI ACTGG 5 cut(s) 542, 977, 1027, 1703, 1753
BseSI GKGCMC 1 cut(s) 2619
BseXI GCAGC 2 cut(s) 298, 2303
BsgI GTGCAG 4 cut(s) 1679, 2206, 2409, 2650
BshNI GGYRCC 1 cut(s) 396
BsiHKCI CYCGRG 1 cut(s) 290
BsiSI CCGG 5 cut(s) 296, 1206, 1254, 2040, 2126
BslFI GGGAC 2 cut(s) 1039, 1765
BsmAI GTCTC 6 cut(s) 443, 862, 993, 1351, 1719, 2641
BsmBI CGTCTC 1 cut(s) 443
BsmFI GGGAC 2 cut(s) 1039, 1765
BsmI GAATGC 2 cut(s) 1151, 1943
Bso31I GGTCTC 1 cut(s) 2641
BsoBI CYCGRG 1 cut(s) 290
Bsp119I TTCGAA 1 cut(s) 154
Bsp1286I GDGCHC 1 cut(s) 2619
Bsp13I TCCGGA 1 cut(s) 2039
Bsp143I GATC 8 cut(s) 61, 67, 307, 745, 1330, 1474, 2203, 2552
BspACI CCGC 8 cut(s) 41, 135, 267, 393, 492, 1060, 1434, 2354
BspCNI CTCAG 2 cut(s) 1347, 2465
BspEI TCCGGA 1 cut(s) 2039
BspHI TCATGA 1 cut(s) 2442
BspLI GGNNCC 7 cut(s) 133, 309, 398, 747, 1042, 1476, 1768
BspMAI CTGCAG 3 cut(s) 726, 2218, 2614
BspMI ACCTGC 3 cut(s) 715, 2178, 2221
BspPI GGATC 7 cut(s) 302, 315, 740, 753, 1469, 1482, 2198
BspT104I TTCGAA 1 cut(s) 154
BspT107I GGYRCC 1 cut(s) 396
BspTNI GGTCTC 1 cut(s) 2641
BsrFI RCCGGY 1 cut(s) 295
BsrI ACTGG 5 cut(s) 542, 977, 1027, 1703, 1753
BssAI RCCGGY 1 cut(s) 295
BssECI CCNNGG 4 cut(s) 1375, 1715, 2126, 2522
BssMI GATC 8 cut(s) 61, 67, 307, 745, 1330, 1474, 2203, 2552
BssNI GRCGYC 3 cut(s) 171, 397, 1266
BssSI CACGAG 1 cut(s) 1065
BssT1I CCWWGG 1 cut(s) 1375
Bst2BI CACGAG 1 cut(s) 1065
Bst4CI ACNGT 3 cut(s) 1316, 2141, 2678
Bst6I CTCTTC 7 cut(s) 78, 441, 873, 1009, 1530, 1735, 2062
BstACI GRCGYC 3 cut(s) 171, 397, 1266
BstBI TTCGAA 1 cut(s) 154
BstDEI CTNAG 4 cut(s) 1092, 1343, 1355, 2452
BstF5I GGATG 9 cut(s) 75, 460, 643, 892, 1296, 1528, 1621, 2593, 2722
BstH2I RGCGCY 1 cut(s) 400
BstHHI GCGC 1 cut(s) 399
BstKTI GATC 8 cut(s) 64, 70, 310, 748, 1333, 1477, 2206, 2555
BstMAI GTCTC 6 cut(s) 443, 862, 993, 1351, 1719, 2641
BstMBI GATC 8 cut(s) 61, 67, 307, 745, 1330, 1474, 2203, 2552
BstMWI GCNNNNNNNGC 7 cut(s) 292, 1463, 1666, 2084, 2282, 2291, 2524
BstNSI RCATGY 1 cut(s) 2422
BstSFI CTRYAG 5 cut(s) 722, 2082, 2214, 2406, 2610
BstSLI GKGCMC 1 cut(s) 2619
BstV1I GCAGC 2 cut(s) 298, 2303
BstV2I GAAGAC 3 cut(s) 440, 970, 1696
BstX2I RGATCY 3 cut(s) 307, 745, 1474
BstYI RGATCY 3 cut(s) 307, 745, 1474
Bsu36I CCTNAGG 1 cut(s) 1343
BtgZI GCGATG 1 cut(s) 2343
BtrI CACGTC 1 cut(s) 685
BtsCI GGATG 9 cut(s) 75, 460, 643, 892, 1296, 1528, 1621, 2593, 2722
BtsI GCAGTG 1 cut(s) 2619
BtsIMutI CAGTG 7 cut(s) 549, 984, 1320, 1710, 2460, 2619, 2683
BveI ACCTGC 3 cut(s) 715, 2178, 2221
CaiI CAGNNNCTG 3 cut(s) 839, 1568, 2459
CciI TCATGA 1 cut(s) 2442
CfoI GCGC 1 cut(s) 399
Cfr10I RCCGGY 1 cut(s) 295
Cfr13I GGNCC 8 cut(s) 131, 718, 1041, 1559, 1767, 2110, 2635, 2702
CseI GACGC 2 cut(s) 1255, 1406
CsiI ACCWGGT 1 cut(s) 2650
Csp6I GTAC 4 cut(s) 384, 828, 2173, 2542
CviAII CATG 4 cut(s) 1445, 2419, 2443, 2625
CviQI GTAC 4 cut(s) 384, 828, 2173, 2542
DdeI CTNAG 4 cut(s) 1092, 1343, 1355, 2452
DinI GGCGCC 1 cut(s) 398
DpnI GATC 8 cut(s) 63, 69, 309, 747, 1332, 1476, 2205, 2554
DpnII GATC 8 cut(s) 61, 67, 307, 745, 1330, 1474, 2203, 2552
DraI TTTAAA 1 cut(s) 2058
DraIII CACNNNGTG 1 cut(s) 2455
DrdI GACNNNNNNGTC 3 cut(s) 170, 269, 1436
DseDI GACNNNNNNGTC 3 cut(s) 170, 269, 1436
EaeI YGGCCR 1 cut(s) 372
Eam1104I CTCTTC 7 cut(s) 78, 441, 873, 1009, 1530, 1735, 2062
EarI CTCTTC 7 cut(s) 78, 441, 873, 1009, 1530, 1735, 2062
EciI GGCGGA 3 cut(s) 30, 256, 2343
Eco130I CCWWGG 1 cut(s) 1375
Eco147I AGGCCT 3 cut(s) 550, 985, 1711
Eco31I GGTCTC 1 cut(s) 2641
Eco47I GGWCC 3 cut(s) 718, 1041, 1767
Eco57I CTGAAG 4 cut(s) 573, 610, 1144, 2002
Eco81I CCTNAGG 1 cut(s) 1343
Eco88I CYCGRG 1 cut(s) 290
EcoO109I RGGNCCY 1 cut(s) 2635
EcoRI GAATTC 3 cut(s) 1871, 2003, 2507
EcoT14I CCWWGG 1 cut(s) 1375
EgeI GGCGCC 1 cut(s) 398
EheI GGCGCC 1 cut(s) 398
ErhI CCWWGG 1 cut(s) 1375
Esp3I CGTCTC 1 cut(s) 443
FaeI CATG 4 cut(s) 1448, 2422, 2446, 2628
FalI AAGNNNNNCTT 4 cut(s) 1142, 1174, 2000, 2032
FaqI GGGAC 2 cut(s) 1039, 1765
FatI CATG 4 cut(s) 1444, 2418, 2442, 2624
FauI CCCGC 3 cut(s) 142, 386, 1441
FauNDI CATATG 1 cut(s) 2437
FblI GTMKAC 3 cut(s) 261, 711, 729
Fnu4HI GCNGC 2 cut(s) 287, 2292
FokI GGATG 9 cut(s) 62, 467, 630, 899, 1283, 1535, 1628, 2580, 2709
Fsp4HI GCNGC 2 cut(s) 287, 2292
FspBI CTAG 1 cut(s) 2096
GlaI GCGC 1 cut(s) 398
GluI GCNGC 2 cut(s) 287, 2292
GsuI CTGGAG 4 cut(s) 579, 1011, 1017, 1743
HaeII RGCGCY 1 cut(s) 400
HapII CCGG 5 cut(s) 296, 1206, 1254, 2040, 2126
HgaI GACGC 2 cut(s) 1255, 1406
HhaI GCGC 1 cut(s) 399
Hin1I GRCGYC 3 cut(s) 171, 397, 1266
Hin1II CATG 4 cut(s) 1448, 2422, 2446, 2628
Hin6I GCGC 1 cut(s) 397
HinP1I GCGC 1 cut(s) 397
HincII GTYRAC 4 cut(s) 6, 262, 712, 730
HindII GTYRAC 4 cut(s) 6, 262, 712, 730
HindIII AAGCTT 2 cut(s) 1667, 2076
HpaII CCGG 5 cut(s) 296, 1206, 1254, 2040, 2126
Hpy166II GTNNAC 6 cut(s) 6, 262, 712, 730, 803, 2255
Hpy8I GTNNAC 6 cut(s) 6, 262, 712, 730, 803, 2255
Hpy99I CGWCG 3 cut(s) 38, 686, 1241
HpyCH4III ACNGT 3 cut(s) 1316, 2141, 2678
HpyCH4IV ACGT 6 cut(s) 36, 171, 684, 1177, 1239, 2032
HpyF10VI GCNNNNNNNGC 7 cut(s) 292, 1463, 1666, 2084, 2282, 2291, 2524
HpyF3I CTNAG 4 cut(s) 1092, 1343, 1355, 2452
HpySE526I ACGT 6 cut(s) 36, 171, 684, 1177, 1239, 2032
Hsp92I GRCGYC 3 cut(s) 171, 397, 1266
Hsp92II CATG 4 cut(s) 1448, 2422, 2446, 2628
HspAI GCGC 1 cut(s) 397
KasI GGCGCC 1 cut(s) 396
Kpn2I TCCGGA 1 cut(s) 2039
KroI GCCGGC 1 cut(s) 295
KroNI GCCGGC 1 cut(s) 297
Kzo9I GATC 8 cut(s) 61, 67, 307, 745, 1330, 1474, 2203, 2552
LmnI GCTCC 5 cut(s) 16, 992, 1198, 2092, 2332
Lsp1109I GCAGC 2 cut(s) 298, 2303
LweI GCATC 8 cut(s) 91, 273, 652, 751, 1440, 1480, 2270, 2285
MabI ACCWGGT 1 cut(s) 2650
MaeI CTAG 1 cut(s) 2096
MaeII ACGT 6 cut(s) 36, 171, 684, 1177, 1239, 2032
MaeIII GTNAC 4 cut(s) 1208, 1316, 2455, 2627
MalI GATC 8 cut(s) 63, 69, 309, 747, 1332, 1476, 2205, 2554
MboI GATC 8 cut(s) 61, 67, 307, 745, 1330, 1474, 2203, 2552
MfeI CAATTG 2 cut(s) 1045, 1771
MflI RGATCY 3 cut(s) 307, 745, 1474
MhlI GDGCHC 1 cut(s) 2619
Mly113I GGCGCC 1 cut(s) 397
MlyI GAGTC 7 cut(s) 257, 707, 995, 1021, 1211, 1721, 1747
MmeI TCCRAC 1 cut(s) 1260
MroI TCCGGA 1 cut(s) 2039
MroNI GCCGGC 1 cut(s) 295
MroXI GAANNNNTTC 4 cut(s) 87, 623, 1157, 2015
MseI TTAA 6 cut(s) 350, 1056, 1782, 2057, 2193, 2718
MspI CCGG 5 cut(s) 296, 1206, 1254, 2040, 2126
MunI CAATTG 2 cut(s) 1045, 1771
Mva1269I GAATGC 2 cut(s) 1151, 1943
MwoI GCNNNNNNNGC 7 cut(s) 292, 1463, 1666, 2084, 2282, 2291, 2524
NaeI GCCGGC 1 cut(s) 297
NarI GGCGCC 1 cut(s) 397
NciI CCSGG 3 cut(s) 1206, 1254, 2127
NdeI CATATG 1 cut(s) 2437
NdeII GATC 8 cut(s) 61, 67, 307, 745, 1330, 1474, 2203, 2552
NgoMIV GCCGGC 1 cut(s) 295
NlaIII CATG 4 cut(s) 1448, 2422, 2446, 2628
NlaIV GGNNCC 7 cut(s) 133, 309, 398, 747, 1042, 1476, 1768
NmeAIII GCCGAG 2 cut(s) 108, 400
NmuCI GTSAC 4 cut(s) 1208, 1316, 2455, 2627
NspI RCATGY 1 cut(s) 2422
NspV TTCGAA 1 cut(s) 154
PaeI GCATGC 1 cut(s) 2422
PaeR7I CTCGAG 1 cut(s) 290
PagI TCATGA 1 cut(s) 2442
PaqCI CACCTGC 1 cut(s) 2221
PceI AGGCCT 3 cut(s) 550, 985, 1711
PcsI WCGNNNNNNNCGW 3 cut(s) 168, 267, 1434
PctI GAATGC 2 cut(s) 1151, 1943
PdiI GCCGGC 1 cut(s) 297
PdmI GAANNNNTTC 4 cut(s) 87, 623, 1157, 2015
PfeI GAWTC 6 cut(s) 88, 151, 328, 1351, 2222, 2350
PflFI GACNNNGTC 5 cut(s) 200, 716, 1176, 1265, 2652
PflMI CCANNNNNTGG 1 cut(s) 701
PfoI TCCNGGA 1 cut(s) 988
PkrI GCNGC 2 cut(s) 288, 2293
PleI GAGTC 7 cut(s) 257, 707, 995, 1021, 1211, 1721, 1747
PluTI GGCGCC 1 cut(s) 400
PpsI GAGTC 7 cut(s) 257, 707, 995, 1021, 1211, 1721, 1747
PspN4I GGNNCC 7 cut(s) 133, 309, 398, 747, 1042, 1476, 1768
PspPI GGNCC 8 cut(s) 131, 718, 1041, 1559, 1767, 2110, 2635, 2702
PspXI VCTCGAGB 1 cut(s) 290
PstI CTGCAG 3 cut(s) 726, 2218, 2614
PstNI CAGNNNCTG 3 cut(s) 839, 1568, 2459
PsuI RGATCY 3 cut(s) 307, 745, 1474
PsyI GACNNNGTC 5 cut(s) 200, 716, 1176, 1265, 2652
RsaI GTAC 4 cut(s) 385, 829, 2174, 2543
RsaNI GTAC 4 cut(s) 384, 828, 2173, 2542
SalI GTCGAC 3 cut(s) 260, 710, 728
SaqAI TTAA 6 cut(s) 350, 1056, 1782, 2057, 2193, 2718
SatI GCNGC 2 cut(s) 287, 2292
Sau3AI GATC 8 cut(s) 61, 67, 307, 745, 1330, 1474, 2203, 2552
Sau96I GGNCC 8 cut(s) 131, 718, 1041, 1559, 1767, 2110, 2635, 2702
SbfI CCTGCAGG 2 cut(s) 726, 2218
ScaI AGTACT 1 cut(s) 385
SchI GAGTC 7 cut(s) 257, 707, 995, 1021, 1211, 1721, 1747
SdaI CCTGCAGG 2 cut(s) 726, 2218
SduI GDGCHC 1 cut(s) 2619
SexAI ACCWGGT 1 cut(s) 2650
SfaNI GCATC 8 cut(s) 91, 273, 652, 751, 1440, 1480, 2270, 2285
SfcI CTRYAG 5 cut(s) 722, 2082, 2214, 2406, 2610
SfoI GGCGCC 1 cut(s) 398
Sfr274I CTCGAG 1 cut(s) 290
SfuI TTCGAA 1 cut(s) 154
SinI GGWCC 3 cut(s) 718, 1041, 1767
SlaI CTCGAG 1 cut(s) 290
SmlI CTYRAG 2 cut(s) 290, 2548
SmoI CTYRAG 2 cut(s) 290, 2548
SphI GCATGC 1 cut(s) 2422
Sse8387I CCTGCAGG 2 cut(s) 726, 2218
SseBI AGGCCT 3 cut(s) 550, 985, 1711
SsiI CCGC 8 cut(s) 41, 135, 267, 393, 492, 1060, 1434, 2354
SspDI GGCGCC 1 cut(s) 396
SspMI CTAG 1 cut(s) 2096
StuI AGGCCT 3 cut(s) 550, 985, 1711
StyI CCWWGG 1 cut(s) 1375
TaaI ACNGT 3 cut(s) 1316, 2141, 2678
TaiI ACGT 6 cut(s) 39, 174, 687, 1180, 1242, 2035
TaqII GACCGA 1 cut(s) 706
TatI WGTACW 2 cut(s) 383, 2541
TfiI GAWTC 6 cut(s) 88, 151, 328, 1351, 2222, 2350
Tru1I TTAA 6 cut(s) 350, 1056, 1782, 2057, 2193, 2718
Tru9I TTAA 6 cut(s) 350, 1056, 1782, 2057, 2193, 2718
TscAI CASTG 7 cut(s) 549, 984, 1327, 1710, 2460, 2619, 2683
TseFI GTSAC 4 cut(s) 1208, 1316, 2455, 2627
TseI GCWGC 2 cut(s) 286, 2291
Tsp45I GTSAC 4 cut(s) 1208, 1316, 2455, 2627
TspGWI ACGGA 3 cut(s) 467, 2190, 2715
TspRI CASTG 7 cut(s) 549, 984, 1327, 1710, 2460, 2619, 2683
Tth111I GACNNNGTC 5 cut(s) 200, 716, 1176, 1265, 2652
Van91I CCANNNNNTGG 1 cut(s) 701
VpaK11BI GGWCC 3 cut(s) 718, 1041, 1767
XapI RAATTY 8 cut(s) 117, 158, 773, 1231, 1871, 2003, 2507, 2714
XbaI TCTAGA 1 cut(s) 2095
XceI RCATGY 1 cut(s) 2422
XhoI CTCGAG 1 cut(s) 290
XmiI GTMKAC 3 cut(s) 261, 711, 729
XmnI GAANNNNTTC 4 cut(s) 87, 623, 1157, 2015
XspI CTAG 1 cut(s) 2096
ZraI GACGTC 1 cut(s) 172
ZrmI AGTACT 1 cut(s) 385
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.