MD14G1165500.v1.1

zinc finger CCCH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr14
OG0000602
Physical Location & Seq
Reverse (-)
25915256 .. 25919057
3802 bp
Loading structure...
UTR
Exon/CDS
Intron
MD14G1165500.v1.1.491

Sequence Viewer

Length: 1917 bp
ATGGAAATCTCTGAAGCTATCTCTCTTGTTCCCCCAGATCCCGAAACCCCCAGCACCAACCACGCTCATTCCGACCAGGGCTTTCTGCCTTCTTCTCCCAATCCCGCTCTCGCATCCTCTGGTCTCGATCATGCGGTCCTCGACGAGCTTCAGAAACTGGATTTGAAAGAGGAGGGGGAGGACGATGGAGAGCCTGATGAGGTGCAGAAGCTGGATTCAGTAGAGAAGGTGGAGGAGGATGGAGCTGGTGAGTTGCAGAAGGTGGATTTGAAGGCGGAGGATGGAGCTGGTGAGTTGCAGAAGGTGGATTTGAAGGCGGAGGATGGGGCTGGTGAGTTGCAGAAGGTGGAATTTTCTGAAGGCGTCGAAGTTCCCCTAAATCCGACGTCTGTTCCGTTACTTGCGCGGTCCGATCTCGTTCCTGAAATCCTTGATTGGATTCGGACACTCGACCCCGCCGTGCTCAATAGGATTAGGAATCGCGACCCTGCCATCCTCCATGAGATTCAGCAATTCGACCTTGAGATTCGGAACTTCGATCCTTCCATCGTTGATGAGATTGGGAACTTCGACCCTGCTTTCCCTTCGGATTTGAAGGCGGAGGAGGAAGGAGCTGGTGAGTTGCAGAAGGTGGATTCGAAGGCAGAGGAGGGTGGAGAGGGAGTGGAGGAAGAAGAGAAGAGTTCCGGTGAGCAAGAGATTGAGATTGTAAATGGAGAGAAAAATGAGAGGCAGAGTGAGCAGAGCGAGCAGAGTGACGGAGGAGAAGGGTGGGGAGGAAATCAGGGGTGGGAGGAGGATGGCGGTGGGGTGGAGGAGAAGAAGGCGGTGGAAACTCAGGAAAGTAACAGAAGGTATCAGTACCCAGTGAGGCCGGAAGCTGAAGACTGTTCATATTATCTAAAGACCGGGTCTTGCAAATTTGGATCCAATTGCAAGTTTAATCACCCTGTTAGAAGGAAACCCAACCAGGTGCCCAAGGAAAGGGTCAAGGATAAGGACGAGTCGGCAGAGAATCCAAGCCAGACGGAATGCAAGTATTACTTGAGGTCGGGTGGATGTAAGTATGGGGAAAATTGCAGATACAGCCACAGCAGAGAGAAACCTTCTGTAGCTCCAGTTCTTGAGCTTAACTTTCTGGGCCTGCCAATTCGACCAGATGAGAGGGAGTGTCCGTACTATATGCGAAATGGCTCCTGCAAGTATGCATCGAACTGCAGGTTTAACCACCCTGATCCTACAACTACAGGAGGATCTGATCCCCCATCTGGATATGGTAATGGTGGTCCTGCATCTTTACAAGGTGCATCACAATCAACAGTGGCACCATGGTCTGCACCAAGGCCTTTGAATGAGTCTCCGGTTTACTCAACATTGATAATTCCACCACCTCAAGTAGTTTCTTCTCAAAATTCAGAATGGAATGGTTATCAGGCGTCAGCATATGTACCAGAAAGAATCATGCCTGCACGTCCGCCATACATGATGAACAACTCTCTGGCTGAAATCAACATCTACAAGCAATATCCACACCAGAATCAAGTTGAAGAGTTCCCAGAAAGACCTGGCCAACCCTTCTGCAGTTATTTCTTAAGAACGGGGGATTGCAAGTTTAAATCTAATTGCAAATATCACCATCCAAAAACTCATACTGCAGTAGCCCCCCAAATCGCACTTAGTGACAAGGGCCTGCCTTTGAGACCGGATCAGAGCATTTGCACACATTACAGTCGCTATGGCCTTTGCAAATTTGGGCCAGCTTGTAAATTTGACCACCCGTTACATATATCATCTTCAACTACATCTGGTCCTCATCATCAACTTCCTTTCAGTGATTTGGCAACTACTAACGGGGCAGGAATGGCTGGGAGCAGAAACGGAACTGATGTTACAAGTCAGCCGCAGCCCGTGCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-CCCH zf-CCCH_2

Protein Analysis

639

Amino Acids

70.3

Weight (kDa)

4.79

Isoelectric Point (pI)

60.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-CCCH PF00642 295 - 317 2.5e-10 Zinc finger C-x8-C-x5-C-x3-H type (and similar)
zf-CCCH PF00642 342 - 366 1.3e-07 Zinc finger C-x8-C-x5-C-x3-H type (and similar)
zf_CCCH_4 PF18345 345 - 364 2.1e-06 Zinc finger domain
zf-CCCH_4 PF18044 345 - 364 5.1e-06 CCCH-type zinc finger
zf-CCCH PF00642 387 - 411 4.3e-08 Zinc finger C-x8-C-x5-C-x3-H type (and similar)
zf-CCCH PF00642 569 - 593 3.7e-08 Zinc finger C-x8-C-x5-C-x3-H type (and similar)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000602)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G48195 AT3G48440 AT5G63260 AT5G63260
fragaria_vesca FvH4_5g07100 FvH4_5g07100 FvH4_5g07100 FvH4_5g07100 FvH4_5g07100 FvH4_5g07100 FvH4_5g07100
malus_domestica MD06G1158800.v1.1 MD06G1159000.v1.1 MD06G1159200.v1.1 MD14G1165100.v1.1 MD14G1165300.v1.1 MD14G1165400.v1.1 MD14G1165500.v1.1
prunus_persica Prupe.5G158300_v2.0.a1 Prupe.5G158300_v2.0.a1 Prupe.5G158400_v2.0.a1 Prupe.5G158400_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158600_v2.0.a1 Prupe.5G158700_v2.0.a1 Prupe.5G158800_v2.0.a1 Prupe.5G158900_v2.0.a1 Prupe.5G159000_v2.0.a1 Prupe.5G159100_v2.0.a1 Prupe.5G159100_v2.0.a1
pyrus_communis pycom02g00910 pycom06g14200 pycom14g13760 pycom14g13790 pycom14g13800
rosa_chinensis RchiOBHm_Chr5g0019351 RchiOBHm_Chr5g0022771 RchiOBHm_Chr7g0191441 RchiOBHm_Chr7g0191531
rosa_laevigata RLG00000004449 RLG00000032440
rosa_multiflora Rmu_sc0001809.1_g000062 Rmu_sc0005292.1_g000027
rosa_roxburghii Rroxscaffold_1G00074260 Rroxscaffold_6G00390280 Rroxscaffold_7G00168660
rosa_rugosa Rorug05G0049600 Rorug05G0049700 Rorug05G0049800 Rorug06G0510400
rosa_samantha Rh5CG151400 Rh5DG140300 Rh7AG118400 Rh7BG120400 Rh7CG123200 Rh7DG121300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 389
Acc36I ACCTGC 1 cut(s) 1209
AccB1I GGYRCC 2 cut(s) 973, 1324
AccBSI CCGCTC 1 cut(s) 107
AccII CGCG 2 cut(s) 406, 483
AclWI GGATC 8 cut(s) 32, 533, 921, 934, 1229, 1253, 1261, 1713
AcoI YGGCCR 1 cut(s) 1567
AcsI RAATTY 5 cut(s) 350, 920, 1411, 1748, 1766
AcuI CTGAAG 4 cut(s) 33, 134, 378, 903
AcyI GRCGYC 3 cut(s) 363, 386, 1436
AdeI CACNNNGTG 1 cut(s) 1679
AfaI GTAC 3 cut(s) 863, 1178, 1449
AfiI CCNNNNNNNGG 2 cut(s) 984, 1268
AflII CTTAAG 1 cut(s) 1591
AgsI TTSAA 7 cut(s) 166, 271, 313, 595, 1351, 1547, 1797
AjiI CACGTC 1 cut(s) 1472
AjnI CCWGG 3 cut(s) 75, 969, 1564
Alw21I GWGCWC 1 cut(s) 465
Alw26I GTCTC 3 cut(s) 128, 1362, 1693
AlwI GGATC 8 cut(s) 32, 533, 921, 934, 1229, 1253, 1261, 1713
AlwNI CAGNNNCTG 2 cut(s) 157, 211
AoxI GGCC 7 cut(s) 872, 1141, 1343, 1567, 1687, 1738, 1754
ApeKI GCWGC 1 cut(s) 1903
ApoI RAATTY 5 cut(s) 350, 920, 1411, 1748, 1766
AspLEI GCGC 1 cut(s) 406
AspS9I GGNCC 7 cut(s) 136, 408, 1141, 1286, 1687, 1754, 1808
AsuC2I CCSGG 1 cut(s) 910
AsuHPI GGTGA 7 cut(s) 260, 302, 344, 629, 701, 938, 1625
AsuII TTCGAA 1 cut(s) 638
AvaII GGWCC 4 cut(s) 136, 408, 1286, 1808
BaeGI GKGCMC 1 cut(s) 978
BalI TGGCCA 1 cut(s) 1569
BamHI GGATCC 1 cut(s) 926
BanI GGYRCC 2 cut(s) 973, 1324
BbsI GAAGAC 1 cut(s) 891
Bbv12I GWGCWC 1 cut(s) 465
BccI CCATC 9 cut(s) 179, 233, 275, 317, 500, 554, 794, 1273, 1644
BceAI ACGGC 1 cut(s) 443
BciT130I CCWGG 3 cut(s) 77, 971, 1566
BcnI CCSGG 1 cut(s) 910
BcoDI GTCTC 3 cut(s) 128, 1362, 1693
BfmI CTRYAG 5 cut(s) 1110, 1216, 1245, 1579, 1653
BfrI CTTAAG 1 cut(s) 1591
BfuAI ACCTGC 1 cut(s) 1209
BisI GCNGC 2 cut(s) 1901, 1904
BlsI GCNGC 2 cut(s) 1902, 1905
Bme1390I CCNGG 4 cut(s) 77, 910, 971, 1566
Bme18I GGWCC 4 cut(s) 136, 408, 1286, 1808
BmgBI CACGTC 1 cut(s) 1472
BmgT120I GGNCC 7 cut(s) 136, 408, 1141, 1286, 1687, 1754, 1808
BmiI GGNNCC 4 cut(s) 928, 975, 1195, 1326
BmrFI CCNGG 4 cut(s) 77, 910, 971, 1566
BmrI ACTGGG 1 cut(s) 860
BmsI GCATC 4 cut(s) 122, 1217, 1301, 1316
BmuI ACTGGG 1 cut(s) 860
BpiI GAAGAC 1 cut(s) 891
BpmI CTGGAG 1 cut(s) 1101
Bpu14I TTCGAA 1 cut(s) 638
BpuEI CTTGAG 4 cut(s) 542, 1066, 1145, 1377
BpuMI CCSGG 1 cut(s) 910
BsaHI GRCGYC 3 cut(s) 363, 386, 1436
BsaI GGTCTC 2 cut(s) 128, 1693
BsaJI CCNNGG 4 cut(s) 76, 978, 1328, 1340
BsaWI WCCGGW 3 cut(s) 686, 1360, 1702
BsaXI ACNNNNNCTCC 4 cut(s) 648, 678, 1160, 1190
Bsc4I CCNNNNNNNGG 2 cut(s) 984, 1268
Bse1I ACTGG 3 cut(s) 162, 866, 1118
BseBI CCWGG 3 cut(s) 77, 971, 1566
BseDI CCNNGG 4 cut(s) 76, 978, 1328, 1340
BseGI GGATG 8 cut(s) 113, 244, 286, 328, 492, 805, 1064, 1636
BseLI CCNNNNNNNGG 2 cut(s) 984, 1268
BseMII CTCAG 1 cut(s) 851
BseNI ACTGG 3 cut(s) 162, 866, 1118
BseRI GAGGAG 7 cut(s) 185, 248, 617, 662, 777, 809, 830
BseSI GKGCMC 1 cut(s) 978
BseYI CCCAGC 2 cut(s) 50, 1865
BsgI GTGCAG 3 cut(s) 224, 1320, 1452
Bsh1236I CGCG 2 cut(s) 406, 483
BshFI GGCC 7 cut(s) 874, 1143, 1345, 1569, 1689, 1740, 1756
BshNI GGYRCC 2 cut(s) 973, 1324
BsiHKAI GWGCWC 1 cut(s) 465
BsiSI CCGG 5 cut(s) 687, 875, 909, 1361, 1703
BslI CCNNNNNNNGG 2 cut(s) 984, 1268
BsmAI GTCTC 3 cut(s) 128, 1362, 1693
BsmI GAATGC 1 cut(s) 1037
BsnI GGCC 7 cut(s) 874, 1143, 1345, 1569, 1689, 1740, 1756
Bso31I GGTCTC 2 cut(s) 128, 1693
Bsp119I TTCGAA 1 cut(s) 638
Bsp1286I GDGCHC 2 cut(s) 465, 978
Bsp143I GATC 9 cut(s) 37, 127, 412, 538, 926, 1234, 1253, 1258, 1705
Bsp19I CCATGG 1 cut(s) 1328
Bsp68I TCGCGA 1 cut(s) 483
BspANI GGCC 7 cut(s) 874, 1143, 1345, 1569, 1689, 1740, 1756
BspCNI CTCAG 1 cut(s) 850
BspFNI CGCG 2 cut(s) 406, 483
BspLI GGNNCC 4 cut(s) 928, 975, 1195, 1326
BspMAI CTGCAG 3 cut(s) 1220, 1583, 1657
BspMI ACCTGC 1 cut(s) 1209
BspPI GGATC 8 cut(s) 32, 533, 921, 934, 1229, 1253, 1261, 1713
BspT104I TTCGAA 1 cut(s) 638
BspT107I GGYRCC 2 cut(s) 973, 1324
BspTI CTTAAG 1 cut(s) 1591
BspTNI GGTCTC 2 cut(s) 128, 1693
BsrBI CCGCTC 1 cut(s) 107
BsrI ACTGG 3 cut(s) 162, 866, 1118
BssECI CCNNGG 4 cut(s) 76, 978, 1328, 1340
BssMI GATC 9 cut(s) 37, 127, 412, 538, 926, 1234, 1253, 1258, 1705
BssNI GRCGYC 3 cut(s) 363, 386, 1436
BssT1I CCWWGG 3 cut(s) 978, 1328, 1340
Bst2UI CCWGG 3 cut(s) 77, 971, 1566
Bst4CI ACNGT 3 cut(s) 890, 1321, 1730
Bst6I CTCTTC 3 cut(s) 669, 674, 1542
BstACI GRCGYC 3 cut(s) 363, 386, 1436
BstAFI CTTAAG 1 cut(s) 1591
BstAPI GCANNNNNTGC 1 cut(s) 1909
BstBI TTCGAA 1 cut(s) 638
BstC8I GCNNGC 5 cut(s) 749, 1145, 1467, 1691, 1758
BstDEI CTNAG 2 cut(s) 837, 1676
BstDSI CCRYGG 1 cut(s) 1328
BstF5I GGATG 8 cut(s) 113, 244, 286, 328, 492, 805, 1064, 1636
BstFNI CGCG 2 cut(s) 406, 483
BstHHI GCGC 1 cut(s) 406
BstKTI GATC 9 cut(s) 40, 130, 415, 541, 929, 1237, 1256, 1261, 1708
BstMAI GTCTC 3 cut(s) 128, 1362, 1693
BstMBI GATC 9 cut(s) 37, 127, 412, 538, 926, 1234, 1253, 1258, 1705
BstMWI GCNNNNNNNGC 5 cut(s) 739, 748, 1086, 1862, 1909
BstNI CCWGG 3 cut(s) 77, 971, 1566
BstSCI CCNGG 4 cut(s) 75, 908, 969, 1564
BstSFI CTRYAG 5 cut(s) 1110, 1216, 1245, 1579, 1653
BstSLI GKGCMC 1 cut(s) 978
BstUI CGCG 2 cut(s) 406, 483
BstV2I GAAGAC 1 cut(s) 891
BstX2I RGATCY 3 cut(s) 37, 926, 1253
BstYI RGATCY 3 cut(s) 37, 926, 1253
BsuRI GGCC 7 cut(s) 874, 1143, 1345, 1569, 1689, 1740, 1756
BtgI CCRYGG 1 cut(s) 1328
BtrI CACGTC 1 cut(s) 1472
BtsCI GGATG 8 cut(s) 113, 244, 286, 328, 492, 805, 1064, 1636
BtsIMutI CAGTG 3 cut(s) 873, 1326, 1837
BtuMI TCGCGA 1 cut(s) 483
BveI ACCTGC 1 cut(s) 1209
Cac8I GCNNGC 5 cut(s) 749, 1145, 1467, 1691, 1758
CaiI CAGNNNCTG 2 cut(s) 157, 211
CfoI GCGC 1 cut(s) 406
Cfr13I GGNCC 7 cut(s) 136, 408, 1141, 1286, 1687, 1754, 1808
CpoI CGGWCCG 1 cut(s) 408
CseI GACGC 2 cut(s) 352, 1425
CsiI ACCWGGT 1 cut(s) 969
Csp6I GTAC 3 cut(s) 862, 1177, 1448
CspI CGGWCCG 1 cut(s) 408
CviAII CATG 5 cut(s) 131, 500, 1329, 1462, 1483
CviQI GTAC 3 cut(s) 862, 1177, 1448
DdeI CTNAG 2 cut(s) 837, 1676
DpnI GATC 9 cut(s) 39, 129, 414, 540, 928, 1236, 1255, 1260, 1707
DpnII GATC 9 cut(s) 37, 127, 412, 538, 926, 1234, 1253, 1258, 1705
DraI TTTAAA 1 cut(s) 1615
DraIII CACNNNGTG 1 cut(s) 1679
EaeI YGGCCR 1 cut(s) 1567
Eam1104I CTCTTC 3 cut(s) 669, 674, 1542
EarI CTCTTC 3 cut(s) 669, 674, 1542
EciI GGCGGA 4 cut(s) 290, 332, 614, 1464
Eco130I CCWWGG 3 cut(s) 978, 1328, 1340
Eco147I AGGCCT 1 cut(s) 1345
Eco31I GGTCTC 2 cut(s) 128, 1693
Eco47I GGWCC 4 cut(s) 136, 408, 1286, 1808
Eco57I CTGAAG 4 cut(s) 33, 134, 378, 903
EcoO109I RGGNCCY 1 cut(s) 1687
EcoRII CCWGG 3 cut(s) 75, 969, 1564
EcoT14I CCWWGG 3 cut(s) 978, 1328, 1340
EcoT22I ATGCAT 1 cut(s) 1210
ErhI CCWWGG 3 cut(s) 978, 1328, 1340
FaeI CATG 5 cut(s) 134, 503, 1332, 1465, 1486
FalI AAGNNNNNCTT 2 cut(s) 1028, 1060
FatI CATG 5 cut(s) 130, 499, 1328, 1461, 1482
FauI CCCGC 2 cut(s) 112, 463
FauNDI CATATG 1 cut(s) 1444
Fnu4HI GCNGC 2 cut(s) 1901, 1904
FokI GGATG 8 cut(s) 100, 251, 293, 335, 479, 812, 1071, 1623
Fsp4HI GCNGC 2 cut(s) 1901, 1904
GlaI GCGC 1 cut(s) 405
GluI GCNGC 2 cut(s) 1901, 1904
GsaI CCCAGC 2 cut(s) 54, 1869
GsuI CTGGAG 1 cut(s) 1101
HaeIII GGCC 7 cut(s) 874, 1143, 1345, 1569, 1689, 1740, 1756
HapII CCGG 5 cut(s) 687, 875, 909, 1361, 1703
HgaI GACGC 2 cut(s) 352, 1425
HhaI GCGC 1 cut(s) 406
Hin1I GRCGYC 3 cut(s) 363, 386, 1436
Hin1II CATG 5 cut(s) 134, 503, 1332, 1465, 1486
Hin6I GCGC 1 cut(s) 404
HinP1I GCGC 1 cut(s) 404
HpaII CCGG 5 cut(s) 687, 875, 909, 1361, 1703
HphI GGTGA 7 cut(s) 260, 302, 344, 629, 701, 938, 1625
Hpy166II GTNNAC 1 cut(s) 1366
Hpy188III TCNNGA 7 cut(s) 41, 125, 422, 482, 839, 1124, 1269
Hpy8I GTNNAC 1 cut(s) 1366
Hpy99I CGWCG 3 cut(s) 146, 368, 388
HpyCH4III ACNGT 3 cut(s) 890, 1321, 1730
HpyCH4IV ACGT 2 cut(s) 386, 1471
HpyF10VI GCNNNNNNNGC 5 cut(s) 739, 748, 1086, 1862, 1909
HpyF3I CTNAG 2 cut(s) 837, 1676
HpySE526I ACGT 2 cut(s) 386, 1471
Hsp92I GRCGYC 3 cut(s) 363, 386, 1436
Hsp92II CATG 5 cut(s) 134, 503, 1332, 1465, 1486
HspAI GCGC 1 cut(s) 404
Kzo9I GATC 9 cut(s) 37, 127, 412, 538, 926, 1234, 1253, 1258, 1705
LmnI GCTCC 6 cut(s) 242, 284, 611, 1120, 1199, 1869
LweI GCATC 4 cut(s) 122, 1217, 1301, 1316
MabI ACCWGGT 1 cut(s) 969
MaeII ACGT 2 cut(s) 386, 1471
MaeIII GTNAC 6 cut(s) 396, 755, 845, 1679, 1779, 1888
MalI GATC 9 cut(s) 39, 129, 414, 540, 928, 1236, 1255, 1260, 1707
MbiI CCGCTC 1 cut(s) 107
MboI GATC 9 cut(s) 37, 127, 412, 538, 926, 1234, 1253, 1258, 1705
MboII GAAGA 9 cut(s) 84, 683, 686, 691, 832, 896, 1395, 1559, 1785
MfeI CAATTG 1 cut(s) 931
MflI RGATCY 3 cut(s) 37, 926, 1253
MhlI GDGCHC 2 cut(s) 465, 978
MlsI TGGCCA 1 cut(s) 1569
MluNI TGGCCA 1 cut(s) 1569
MlyI GAGTC 2 cut(s) 1013, 1364
MmeI TCCRAC 2 cut(s) 96, 407
Mox20I TGGCCA 1 cut(s) 1569
Mph1103I ATGCAT 1 cut(s) 1210
MscI TGGCCA 1 cut(s) 1569
MseI TTAA 5 cut(s) 942, 1131, 1224, 1592, 1614
Msp20I TGGCCA 1 cut(s) 1569
MspCI CTTAAG 1 cut(s) 1591
MspI CCGG 5 cut(s) 687, 875, 909, 1361, 1703
MspR9I CCNGG 4 cut(s) 77, 910, 971, 1566
MunI CAATTG 1 cut(s) 931
Mva1269I GAATGC 1 cut(s) 1037
MvaI CCWGG 3 cut(s) 77, 971, 1566
MvnI CGCG 2 cut(s) 406, 483
MwoI GCNNNNNNNGC 5 cut(s) 739, 748, 1086, 1862, 1909
NciI CCSGG 1 cut(s) 910
NcoI CCATGG 1 cut(s) 1328
NdeI CATATG 1 cut(s) 1444
NdeII GATC 9 cut(s) 37, 127, 412, 538, 926, 1234, 1253, 1258, 1705
NlaIII CATG 5 cut(s) 134, 503, 1332, 1465, 1486
NlaIV GGNNCC 4 cut(s) 928, 975, 1195, 1326
NmuCI GTSAC 2 cut(s) 755, 1679
NruI TCGCGA 1 cut(s) 483
NsiI ATGCAT 1 cut(s) 1210
NspV TTCGAA 1 cut(s) 638
PceI AGGCCT 1 cut(s) 1345
PcsI WCGNNNNNNNCGW 3 cut(s) 69, 392, 456
PctI GAATGC 1 cut(s) 1037
PfeI GAWTC 9 cut(s) 215, 439, 478, 505, 526, 635, 1015, 1458, 1537
PflFI GACNNNGTC 1 cut(s) 910
PkrI GCNGC 2 cut(s) 1902, 1905
PleI GAGTC 2 cut(s) 1012, 1363
PpsI GAGTC 2 cut(s) 1012, 1363
Psp6I CCWGG 3 cut(s) 75, 969, 1564
PspFI CCCAGC 2 cut(s) 50, 1865
PspGI CCWGG 3 cut(s) 75, 969, 1564
PspN4I GGNNCC 4 cut(s) 928, 975, 1195, 1326
PspPI GGNCC 7 cut(s) 136, 408, 1141, 1286, 1687, 1754, 1808
PsrI GAACNNNNNNTAC 4 cut(s) 1104, 1136, 1873, 1905
PstI CTGCAG 3 cut(s) 1220, 1583, 1657
PstNI CAGNNNCTG 2 cut(s) 157, 211
PsuI RGATCY 3 cut(s) 37, 926, 1253
PsyI GACNNNGTC 1 cut(s) 910
RruI TCGCGA 1 cut(s) 483
RsaI GTAC 3 cut(s) 863, 1178, 1449
RsaNI GTAC 3 cut(s) 862, 1177, 1448
Rsr2I CGGWCCG 1 cut(s) 408
RsrII CGGWCCG 1 cut(s) 408
SaqAI TTAA 5 cut(s) 942, 1131, 1224, 1592, 1614
SatI GCNGC 2 cut(s) 1901, 1904
Sau3AI GATC 9 cut(s) 37, 127, 412, 538, 926, 1234, 1253, 1258, 1705
Sau96I GGNCC 7 cut(s) 136, 408, 1141, 1286, 1687, 1754, 1808
SchI GAGTC 2 cut(s) 1013, 1364
ScrFI CCNGG 4 cut(s) 77, 910, 971, 1566
SduI GDGCHC 2 cut(s) 465, 978
SexAI ACCWGGT 1 cut(s) 969
SfaNI GCATC 4 cut(s) 122, 1217, 1301, 1316
SfcI CTRYAG 5 cut(s) 1110, 1216, 1245, 1579, 1653
SfuI TTCGAA 1 cut(s) 638
SinI GGWCC 4 cut(s) 136, 408, 1286, 1808
SmlI CTYRAG 5 cut(s) 521, 1045, 1124, 1392, 1591
SmoI CTYRAG 5 cut(s) 521, 1045, 1124, 1392, 1591
SseBI AGGCCT 1 cut(s) 1345
StuI AGGCCT 1 cut(s) 1345
StyD4I CCNGG 4 cut(s) 75, 908, 969, 1564
StyI CCWWGG 3 cut(s) 978, 1328, 1340
TaaI ACNGT 3 cut(s) 890, 1321, 1730
TaiI ACGT 2 cut(s) 389, 1474
TauI GCSGC 1 cut(s) 1903
TfiI GAWTC 9 cut(s) 215, 439, 478, 505, 526, 635, 1015, 1458, 1537
Tru1I TTAA 5 cut(s) 942, 1131, 1224, 1592, 1614
Tru9I TTAA 5 cut(s) 942, 1131, 1224, 1592, 1614
TscAI CASTG 3 cut(s) 873, 1326, 1837
TseFI GTSAC 2 cut(s) 755, 1679
TseI GCWGC 1 cut(s) 1903
Tsp45I GTSAC 2 cut(s) 755, 1679
TspDTI ATGAA 2 cut(s) 882, 1502
TspGWI ACGGA 5 cut(s) 384, 774, 1043, 1164, 1893
TspRI CASTG 3 cut(s) 873, 1326, 1837
Tth111I GACNNNGTC 1 cut(s) 910
Vha464I CTTAAG 1 cut(s) 1591
VpaK11BI GGWCC 4 cut(s) 136, 408, 1286, 1808
XapI RAATTY 5 cut(s) 350, 920, 1411, 1748, 1766
ZraI GACGTC 1 cut(s) 387
Zsp2I ATGCAT 1 cut(s) 1210
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.