MD14G1165300.v1.1

zinc finger CCCH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr14
OG0000602
Physical Location & Seq
Reverse (-)
25900928 .. 25904720
3793 bp
Loading structure...
UTR
Exon/CDS
Intron
MD14G1165300.v1.1.491

Sequence Viewer

Length: 1593 bp
ATGTTCACAGCGGCGCGTGTCCTCCTACCGGTGTCACTGTCAGTGCTGGTCGTAATTTATAAGTACTTCAGATCCGGACAAAAATCGAAATTTTCTGAAGGCGCCGAAGTTCCCCTAAATCCGACGTCTGTTCCGTCACCTGCGCCGTCCGATCTCGAGCGTGAAATCCTTGATTGGATTCGGAGACTCGACCCCGCCGTGCTCAATAGGATTAGGAATCGCGACCCTGCCCTCCTCCATGAGATTCAGCAATTCGACCCCGCCGTTGAGATTCGCAACTTCGATCCTTCCATCGTTGATGAGATTCGGAACTTGGACCCTGCTTTCCCTTGGGAAATTTCTGAAAGCGTAGACGTTCCTCAAAATCCCCCGTCTGTTCCGTCTCCTGAGCCGTCCGTTCCGTCTCCTGAGCCGTCCGTTGTTGAAATCCTTGATTGGATTGGGACACTCGGCCCCGCCGTGCTCGATGAGATTCAGCAATTCGACCCCGCCTTCCTGGATGAGGATCGGAACTTCGATCCTTCCATCGTTGATGGGATTCGAAAATTGAGTTTGAAGGAAAATGAGGAAAAAGAAGAAGAGGAGAAGGAGAGAGAGAGGGAAAAGAGCGAAAGCAGTAGCAGCAGTGGCAGCGGAGGAGGGAATGAGAATGGTGGTGAGGTGGGGGAGGAGGTTGTTGAGGAGAGTAGCAGAAGGGATCAGTACCCATTGAGGCTTGGAGACTGTTGGAACTATCTGAGGACTGGCATTTGTAAGTTCGGATCGAATTGCAAGTATAATCACCCTCGGATAGGGAAAAACAAGCAGGTGTCGAAGGACAAGGCAAAGCAGAGGGAAGAGTTGGAAGAGAAGCAAGACCAGACCGAAAGCAAGTATTACATCAGCCCAGGACGACGTATAGGGGTACCTTCTGTAGCTCCAGCTCTGGAACTTAATTTTTCGGACCTGCCAATTCGTCCGGGGGAGAAAGATTGTTCCTACTATATGCGAACTGGGACCTGCAAGTACGGAATAAACTGCAAGTTTAACCACCCTGATCCTACAGCTGCTGGAGAATCTCACCCGCAATCCGCGTATGGTAATGGTAGGCCTGCATCATTACAAGGTCTGCCAAATTCTCAAGGGATTAATTCTGAAACTACAGAATGGAATGGTTATCAGGCTCCAGCATATCTACCAAGCATGCCTGCACCTCCACCTCCACCTCCACCTCCACCACCTCCACCACCTCCACCATATGTTCATAGAAACATGCCTGCACCTCCACCATATGTTACGAACAACTCGGTGACTGAAACCAACTACTACGGACAATATGCACAGCAGACGCAAGCTGAAGAATTACCAGAACGACCTGGGCAACCTGTTTGCTTCTATTTCGCTCAAACAGGGGATTGTGATAATAAATCTAATTGCCAATATCACCATCCAAAAAATCAGACTGCAGCGACCCCCTCATGTGCACTCAGTGACAGGGGCCTCCCTTTAAGACCAGGTCAGAAGATTTGCACAGAGTACAGCCGCTTTGGCGTTTGCAGTTCTGGGCCAACCTGTAGATTTGACCATCCGTCATTATCAGATTCCTTTCTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-CCCH zf-CCCH_2

Protein Analysis

531

Amino Acids

58.91

Weight (kDa)

5.01

Isoelectric Point (pI)

67.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-CCCH PF00642 242 - 263 2.1e-07 Zinc finger C-x8-C-x5-C-x3-H type (and similar)
zf-CCCH PF00642 321 - 345 1.8e-10 Zinc finger C-x8-C-x5-C-x3-H type (and similar)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000602)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G48195 AT3G48440 AT5G63260 AT5G63260
fragaria_vesca FvH4_5g07100 FvH4_5g07100 FvH4_5g07100 FvH4_5g07100 FvH4_5g07100 FvH4_5g07100 FvH4_5g07100
malus_domestica MD06G1158800.v1.1 MD06G1159000.v1.1 MD06G1159200.v1.1 MD14G1165100.v1.1 MD14G1165300.v1.1 MD14G1165400.v1.1 MD14G1165500.v1.1
prunus_persica Prupe.5G158300_v2.0.a1 Prupe.5G158300_v2.0.a1 Prupe.5G158400_v2.0.a1 Prupe.5G158400_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158600_v2.0.a1 Prupe.5G158700_v2.0.a1 Prupe.5G158800_v2.0.a1 Prupe.5G158900_v2.0.a1 Prupe.5G159000_v2.0.a1 Prupe.5G159100_v2.0.a1 Prupe.5G159100_v2.0.a1
pyrus_communis pycom02g00910 pycom06g14200 pycom14g13760 pycom14g13790 pycom14g13800
rosa_chinensis RchiOBHm_Chr5g0019351 RchiOBHm_Chr5g0022771 RchiOBHm_Chr7g0191441 RchiOBHm_Chr7g0191531
rosa_laevigata RLG00000004449 RLG00000032440
rosa_multiflora Rmu_sc0001809.1_g000062 Rmu_sc0005292.1_g000027
rosa_roxburghii Rroxscaffold_1G00074260 Rroxscaffold_6G00390280 Rroxscaffold_7G00168660
rosa_rugosa Rorug05G0049600 Rorug05G0049700 Rorug05G0049800 Rorug06G0510400
rosa_samantha Rh5CG151400 Rh5DG140300 Rh7AG118400 Rh7BG120400 Rh7CG123200 Rh7DG121300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 60
AarI CACCTGC 2 cut(s) 148, 796
AatII GACGTC 1 cut(s) 128
Acc36I ACCTGC 4 cut(s) 148, 796, 954, 1007
Acc65I GGTACC 1 cut(s) 904
AccB1I GGYRCC 2 cut(s) 101, 904
AccI GTMKAC 1 cut(s) 351
AccII CGCG 3 cut(s) 16, 222, 1073
AccIII TCCGGA 1 cut(s) 74
AciI CCGC 9 cut(s) 11, 195, 261, 456, 489, 633, 1064, 1071, 1522
AclWI GGATC 7 cut(s) 66, 278, 512, 513, 705, 769, 1031
AcsI RAATTY 3 cut(s) 89, 336, 1114
AcuI CTGAAG 3 cut(s) 52, 117, 1356
AcyI GRCGYC 2 cut(s) 102, 125
AdeI CACNNNGTG 1 cut(s) 1469
AfaI GTAC 5 cut(s) 65, 704, 906, 1007, 1517
AfiI CCNNNNNNNGG 3 cut(s) 28, 502, 791
AgeI ACCGGT 1 cut(s) 28
AgsI TTSAA 2 cut(s) 425, 556
AhdI GACNNNNNGTC 1 cut(s) 1567
AjnI CCWGG 4 cut(s) 495, 886, 1354, 1492
AluBI AGCT 4 cut(s) 917, 923, 1046, 1334
AluI AGCT 4 cut(s) 917, 923, 1046, 1334
Alw21I GWGCWC 3 cut(s) 204, 465, 1465
Alw26I GTCTC 4 cut(s) 178, 387, 408, 714
Alw44I GTGCAC 1 cut(s) 1461
AlwI GGATC 7 cut(s) 66, 278, 512, 513, 705, 769, 1031
AlwNI CAGNNNCTG 1 cut(s) 1049
Ama87I CYCGRG 1 cut(s) 155
Aor13HI TCCGGA 1 cut(s) 74
AoxI GGCC 4 cut(s) 451, 1088, 1477, 1544
ApaLI GTGCAC 1 cut(s) 1461
ApeKI GCWGC 4 cut(s) 621, 630, 1046, 1445
ApoI RAATTY 3 cut(s) 89, 336, 1114
AseI ATTAAT 1 cut(s) 1128
AsiGI ACCGGT 1 cut(s) 28
Asp718I GGTACC 1 cut(s) 904
AspLEI GCGC 3 cut(s) 16, 104, 145
AspS9I GGNCC 6 cut(s) 316, 452, 943, 996, 1477, 1544
AsuC2I CCSGG 1 cut(s) 960
AsuHPI GGTGA 6 cut(s) 129, 668, 773, 1052, 1300, 1415
AsuII TTCGAA 1 cut(s) 541
AvaI CYCGRG 1 cut(s) 155
AvaII GGWCC 3 cut(s) 316, 943, 996
BaeGI GKGCMC 1 cut(s) 1465
BanI GGYRCC 2 cut(s) 101, 904
Bbv12I GWGCWC 3 cut(s) 204, 465, 1465
BbvI GCAGC 4 cut(s) 633, 642, 1033, 1457
BccI CCATC 5 cut(s) 299, 527, 533, 1434, 1572
BceAI ACGGC 6 cut(s) 130, 182, 248, 376, 397, 443
BciT130I CCWGG 4 cut(s) 497, 888, 1356, 1494
BcnI CCSGG 1 cut(s) 960
BcoDI GTCTC 4 cut(s) 178, 387, 408, 714
BfmI CTRYAG 5 cut(s) 912, 1041, 1140, 1443, 1552
BfoI RGCGCY 1 cut(s) 105
BfuAI ACCTGC 4 cut(s) 148, 796, 954, 1007
BglI GCCNNNNNGGC 1 cut(s) 1527
BisI GCNGC 6 cut(s) 12, 622, 631, 1047, 1446, 1522
BlsI GCNGC 6 cut(s) 13, 623, 632, 1048, 1447, 1523
BmcAI AGTACT 1 cut(s) 65
Bme1390I CCNGG 5 cut(s) 497, 888, 960, 1356, 1494
Bme18I GGWCC 3 cut(s) 316, 943, 996
BmeRI GACNNNNNGTC 1 cut(s) 1567
BmeT110I CYCGRG 1 cut(s) 155
BmgT120I GGNCC 6 cut(s) 316, 452, 943, 996, 1477, 1544
BmiI GGNNCC 7 cut(s) 103, 318, 454, 906, 997, 1164, 1478
BmrFI CCNGG 5 cut(s) 497, 888, 960, 1356, 1494
BmrI ACTGGG 1 cut(s) 1002
BmsI GCATC 1 cut(s) 1103
BmuI ACTGGG 1 cut(s) 1002
BpmI CTGGAG 3 cut(s) 903, 1071, 1149
Bpu10I CCTNAGC 2 cut(s) 387, 408
Bpu14I TTCGAA 1 cut(s) 541
BpuEI CTTGAG 1 cut(s) 1104
BpuMI CCSGG 1 cut(s) 960
BsaBI GATNNNNATC 1 cut(s) 504
BsaHI GRCGYC 2 cut(s) 102, 125
BsaJI CCNNGG 5 cut(s) 329, 785, 886, 959, 1355
BsaWI WCCGGW 2 cut(s) 28, 74
Bsc4I CCNNNNNNNGG 3 cut(s) 28, 502, 791
Bse118I RCCGGY 1 cut(s) 28
Bse1I ACTGG 2 cut(s) 748, 997
Bse8I GATNNNNATC 1 cut(s) 504
BseAI TCCGGA 1 cut(s) 74
BseBI CCWGG 4 cut(s) 497, 888, 1356, 1494
BseDI CCNNGG 5 cut(s) 329, 785, 886, 959, 1355
BseGI GGATG 3 cut(s) 505, 1426, 1564
BseJI GATNNNNATC 1 cut(s) 504
BseLI CCNNNNNNNGG 3 cut(s) 28, 502, 791
BseMII CTCAG 4 cut(s) 378, 399, 728, 1480
BseNI ACTGG 2 cut(s) 748, 997
BseRI GAGGAG 5 cut(s) 224, 596, 651, 683, 695
BseSI GKGCMC 1 cut(s) 1465
BseXI GCAGC 4 cut(s) 633, 642, 1033, 1457
BsgI GTGCAG 2 cut(s) 1173, 1242
Bsh1236I CGCG 3 cut(s) 16, 222, 1073
BshFI GGCC 4 cut(s) 453, 1090, 1479, 1546
BshNI GGYRCC 2 cut(s) 101, 904
BshTI ACCGGT 1 cut(s) 28
BsiHKAI GWGCWC 3 cut(s) 204, 465, 1465
BsiHKCI CYCGRG 1 cut(s) 155
BsiSI CCGG 3 cut(s) 29, 75, 959
BslFI GGGAC 2 cut(s) 457, 1009
BslI CCNNNNNNNGG 3 cut(s) 28, 502, 791
BsmAI GTCTC 4 cut(s) 178, 387, 408, 714
BsmBI CGTCTC 2 cut(s) 387, 408
BsmFI GGGAC 2 cut(s) 457, 1009
BsnI GGCC 4 cut(s) 453, 1090, 1479, 1546
BsoBI CYCGRG 1 cut(s) 155
Bsp119I TTCGAA 1 cut(s) 541
Bsp1286I GDGCHC 3 cut(s) 204, 465, 1465
Bsp13I TCCGGA 1 cut(s) 74
Bsp143I GATC 8 cut(s) 71, 151, 283, 505, 517, 697, 761, 1036
Bsp68I TCGCGA 1 cut(s) 222
BspACI CCGC 9 cut(s) 11, 195, 261, 456, 489, 633, 1064, 1071, 1522
BspANI GGCC 4 cut(s) 453, 1090, 1479, 1546
BspCNI CTCAG 4 cut(s) 379, 400, 729, 1479
BspEI TCCGGA 1 cut(s) 74
BspFNI CGCG 3 cut(s) 16, 222, 1073
BspLI GGNNCC 7 cut(s) 103, 318, 454, 906, 997, 1164, 1478
BspMAI CTGCAG 1 cut(s) 1447
BspMI ACCTGC 4 cut(s) 148, 796, 954, 1007
BspPI GGATC 7 cut(s) 66, 278, 512, 513, 705, 769, 1031
BspT104I TTCGAA 1 cut(s) 541
BspT107I GGYRCC 2 cut(s) 101, 904
BsrFI RCCGGY 1 cut(s) 28
BsrI ACTGG 2 cut(s) 748, 997
BssAI RCCGGY 1 cut(s) 28
BssECI CCNNGG 5 cut(s) 329, 785, 886, 959, 1355
BssMI GATC 8 cut(s) 71, 151, 283, 505, 517, 697, 761, 1036
BssNI GRCGYC 2 cut(s) 102, 125
BssT1I CCWWGG 1 cut(s) 329
Bst2UI CCWGG 4 cut(s) 497, 888, 1356, 1494
Bst4CI ACNGT 2 cut(s) 39, 725
Bst6I CTCTTC 3 cut(s) 573, 831, 840
BstACI GRCGYC 2 cut(s) 102, 125
BstBI TTCGAA 1 cut(s) 541
BstC8I GCNNGC 5 cut(s) 1092, 1184, 1188, 1257, 1332
BstDEI CTNAG 4 cut(s) 387, 408, 737, 1466
BstENI CCTNNNNNAGG 2 cut(s) 500, 789
BstF5I GGATG 3 cut(s) 505, 1426, 1564
BstFNI CGCG 3 cut(s) 16, 222, 1073
BstH2I RGCGCY 1 cut(s) 105
BstHHI GCGC 3 cut(s) 16, 104, 145
BstKTI GATC 8 cut(s) 74, 154, 286, 508, 520, 700, 764, 1039
BstMAI GTCTC 4 cut(s) 178, 387, 408, 714
BstMBI GATC 8 cut(s) 71, 151, 283, 505, 517, 697, 761, 1036
BstMWI GCNNNNNNNGC 4 cut(s) 621, 627, 630, 1527
BstNI CCWGG 4 cut(s) 497, 888, 1356, 1494
BstNSI RCATGY 2 cut(s) 1186, 1255
BstSCI CCNGG 5 cut(s) 495, 886, 958, 1354, 1492
BstSFI CTRYAG 5 cut(s) 912, 1041, 1140, 1443, 1552
BstSLI GKGCMC 1 cut(s) 1465
BstUI CGCG 3 cut(s) 16, 222, 1073
BstV1I GCAGC 4 cut(s) 633, 642, 1033, 1457
BstX2I RGATCY 1 cut(s) 71
BstYI RGATCY 1 cut(s) 71
BsuRI GGCC 4 cut(s) 453, 1090, 1479, 1546
BtsCI GGATG 3 cut(s) 505, 1426, 1564
BtsI GCAGTG 1 cut(s) 631
BtsIMutI CAGTG 4 cut(s) 35, 48, 631, 1474
BtuMI TCGCGA 1 cut(s) 222
BveI ACCTGC 4 cut(s) 148, 796, 954, 1007
Cac8I GCNNGC 5 cut(s) 1092, 1184, 1188, 1257, 1332
CaiI CAGNNNCTG 1 cut(s) 1049
CfoI GCGC 3 cut(s) 16, 104, 145
Cfr10I RCCGGY 1 cut(s) 28
Cfr13I GGNCC 6 cut(s) 316, 452, 943, 996, 1477, 1544
CseI GACGC 1 cut(s) 1336
CsiI ACCWGGT 1 cut(s) 1492
Csp6I GTAC 5 cut(s) 64, 703, 905, 1006, 1516
CspAI ACCGGT 1 cut(s) 28
CviAII CATG 4 cut(s) 239, 1183, 1252, 1458
CviQI GTAC 5 cut(s) 64, 703, 905, 1006, 1516
DdeI CTNAG 4 cut(s) 387, 408, 737, 1466
DinI GGCGCC 1 cut(s) 103
DpnI GATC 8 cut(s) 73, 153, 285, 507, 519, 699, 763, 1038
DpnII GATC 8 cut(s) 71, 151, 283, 505, 517, 697, 761, 1036
DraIII CACNNNGTG 1 cut(s) 1469
DriI GACNNNNNGTC 1 cut(s) 1567
Eam1104I CTCTTC 3 cut(s) 573, 831, 840
Eam1105I GACNNNNNGTC 1 cut(s) 1567
EarI CTCTTC 3 cut(s) 573, 831, 840
Eco130I CCWWGG 1 cut(s) 329
Eco147I AGGCCT 1 cut(s) 1090
Eco47I GGWCC 3 cut(s) 316, 943, 996
Eco57I CTGAAG 3 cut(s) 52, 117, 1356
Eco88I CYCGRG 1 cut(s) 155
EcoNI CCTNNNNNAGG 2 cut(s) 500, 789
EcoO109I RGGNCCY 2 cut(s) 996, 1477
EcoRII CCWGG 4 cut(s) 495, 886, 1354, 1492
EcoT14I CCWWGG 1 cut(s) 329
EgeI GGCGCC 1 cut(s) 103
EheI GGCGCC 1 cut(s) 103
ErhI CCWWGG 1 cut(s) 329
Esp3I CGTCTC 2 cut(s) 387, 408
FaeI CATG 4 cut(s) 242, 1186, 1255, 1461
FaqI GGGAC 2 cut(s) 457, 1009
FatI CATG 4 cut(s) 238, 1182, 1251, 1457
FauI CCCGC 5 cut(s) 202, 268, 463, 496, 1071
FauNDI CATATG 2 cut(s) 1237, 1270
FblI GTMKAC 1 cut(s) 351
Fnu4HI GCNGC 6 cut(s) 12, 622, 631, 1047, 1446, 1522
FokI GGATG 3 cut(s) 512, 1413, 1551
Fsp4HI GCNGC 6 cut(s) 12, 622, 631, 1047, 1446, 1522
GlaI GCGC 3 cut(s) 15, 103, 144
GluI GCNGC 6 cut(s) 12, 622, 631, 1047, 1446, 1522
GsuI CTGGAG 3 cut(s) 903, 1071, 1149
HaeII RGCGCY 1 cut(s) 105
HaeIII GGCC 4 cut(s) 453, 1090, 1479, 1546
HapII CCGG 3 cut(s) 29, 75, 959
HgaI GACGC 1 cut(s) 1336
HhaI GCGC 3 cut(s) 16, 104, 145
Hin1I GRCGYC 2 cut(s) 102, 125
Hin1II CATG 4 cut(s) 242, 1186, 1255, 1461
Hin6I GCGC 3 cut(s) 14, 102, 143
HinP1I GCGC 3 cut(s) 14, 102, 143
HpaII CCGG 3 cut(s) 29, 75, 959
HphI GGTGA 6 cut(s) 129, 668, 773, 1052, 1300, 1415
Hpy166II GTNNAC 3 cut(s) 6, 352, 1463
Hpy188III TCNNGA 6 cut(s) 75, 155, 221, 386, 407, 926
Hpy8I GTNNAC 3 cut(s) 6, 352, 1463
Hpy99I CGWCG 2 cut(s) 127, 897
HpyAV CCTTC 9 cut(s) 92, 297, 502, 531, 550, 580, 687, 808, 918
HpyCH4III ACNGT 2 cut(s) 39, 725
HpyCH4IV ACGT 3 cut(s) 125, 354, 895
HpyF10VI GCNNNNNNNGC 4 cut(s) 621, 627, 630, 1527
HpyF3I CTNAG 4 cut(s) 387, 408, 737, 1466
HpySE526I ACGT 3 cut(s) 125, 354, 895
Hsp92I GRCGYC 2 cut(s) 102, 125
Hsp92II CATG 4 cut(s) 242, 1186, 1255, 1461
HspAI GCGC 3 cut(s) 14, 102, 143
KasI GGCGCC 1 cut(s) 101
Kpn2I TCCGGA 1 cut(s) 74
KpnI GGTACC 1 cut(s) 908
Kzo9I GATC 8 cut(s) 71, 151, 283, 505, 517, 697, 761, 1036
LmnI GCTCC 2 cut(s) 922, 1168
Lsp1109I GCAGC 4 cut(s) 633, 642, 1033, 1457
LweI GCATC 1 cut(s) 1103
MabI ACCWGGT 1 cut(s) 1492
MaeII ACGT 3 cut(s) 125, 354, 895
MaeIII GTNAC 5 cut(s) 33, 135, 1273, 1288, 1469
MalI GATC 8 cut(s) 73, 153, 285, 507, 519, 699, 763, 1038
MboI GATC 8 cut(s) 71, 151, 283, 505, 517, 697, 761, 1036
MboII GAAGA 6 cut(s) 587, 590, 848, 857, 1349, 1513
MflI RGATCY 1 cut(s) 71
MhlI GDGCHC 3 cut(s) 204, 465, 1465
Mly113I GGCGCC 1 cut(s) 102
MlyI GAGTC 1 cut(s) 180
MmeI TCCRAC 3 cut(s) 146, 707, 822
MroI TCCGGA 1 cut(s) 74
MseI TTAA 4 cut(s) 933, 1026, 1128, 1487
MspA1I CMGCKG 3 cut(s) 11, 633, 1046
MspI CCGG 3 cut(s) 29, 75, 959
MspR9I CCNGG 5 cut(s) 497, 888, 960, 1356, 1494
MvaI CCWGG 4 cut(s) 497, 888, 1356, 1494
MvnI CGCG 3 cut(s) 16, 222, 1073
MwoI GCNNNNNNNGC 4 cut(s) 621, 627, 630, 1527
NarI GGCGCC 1 cut(s) 102
NciI CCSGG 1 cut(s) 960
NdeI CATATG 2 cut(s) 1237, 1270
NdeII GATC 8 cut(s) 71, 151, 283, 505, 517, 697, 761, 1036
NlaIII CATG 4 cut(s) 242, 1186, 1255, 1461
NlaIV GGNNCC 7 cut(s) 103, 318, 454, 906, 997, 1164, 1478
NmeAIII GCCGAG 1 cut(s) 429
NmuCI GTSAC 4 cut(s) 33, 135, 1288, 1469
NruI TCGCGA 1 cut(s) 222
NspI RCATGY 2 cut(s) 1186, 1255
NspV TTCGAA 1 cut(s) 541
PaeI GCATGC 1 cut(s) 1186
PaeR7I CTCGAG 1 cut(s) 155
PaqCI CACCTGC 2 cut(s) 148, 796
PceI AGGCCT 1 cut(s) 1090
PcsI WCGNNNNNNNCGW 4 cut(s) 131, 195, 261, 456
PfeI GAWTC 9 cut(s) 178, 217, 244, 271, 304, 472, 538, 1055, 1580
PflFI GACNNNGTC 1 cut(s) 1494
PfoI TCCNGGA 1 cut(s) 495
PinAI ACCGGT 1 cut(s) 28
PkrI GCNGC 6 cut(s) 13, 623, 632, 1048, 1447, 1523
PleI GAGTC 1 cut(s) 180
PluTI GGCGCC 1 cut(s) 105
PpsI GAGTC 1 cut(s) 180
PpuMI RGGWCCY 1 cut(s) 996
PshBI ATTAAT 1 cut(s) 1128
PsiI TTATAA 1 cut(s) 60
Psp5II RGGWCCY 1 cut(s) 996
Psp6I CCWGG 4 cut(s) 495, 886, 1354, 1492
PspGI CCWGG 4 cut(s) 495, 886, 1354, 1492
PspN4I GGNNCC 7 cut(s) 103, 318, 454, 906, 997, 1164, 1478
PspPI GGNCC 6 cut(s) 316, 452, 943, 996, 1477, 1544
PspPPI RGGWCCY 1 cut(s) 996
PstI CTGCAG 1 cut(s) 1447
PstNI CAGNNNCTG 1 cut(s) 1049
PsuI RGATCY 1 cut(s) 71
PsyI GACNNNGTC 1 cut(s) 1494
PvuII CAGCTG 1 cut(s) 1046
RruI TCGCGA 1 cut(s) 222
RsaI GTAC 5 cut(s) 65, 704, 906, 1007, 1517
RsaNI GTAC 5 cut(s) 64, 703, 905, 1006, 1516
SaqAI TTAA 4 cut(s) 933, 1026, 1128, 1487
SatI GCNGC 6 cut(s) 12, 622, 631, 1047, 1446, 1522
Sau3AI GATC 8 cut(s) 71, 151, 283, 505, 517, 697, 761, 1036
Sau96I GGNCC 6 cut(s) 316, 452, 943, 996, 1477, 1544
ScaI AGTACT 1 cut(s) 65
SchI GAGTC 1 cut(s) 180
ScrFI CCNGG 5 cut(s) 497, 888, 960, 1356, 1494
SduI GDGCHC 3 cut(s) 204, 465, 1465
SexAI ACCWGGT 1 cut(s) 1492
SfaNI GCATC 1 cut(s) 1103
SfcI CTRYAG 5 cut(s) 912, 1041, 1140, 1443, 1552
SfoI GGCGCC 1 cut(s) 103
Sfr274I CTCGAG 1 cut(s) 155
SfuI TTCGAA 1 cut(s) 541
SinI GGWCC 3 cut(s) 316, 943, 996
SlaI CTCGAG 1 cut(s) 155
SmlI CTYRAG 2 cut(s) 155, 1119
SmoI CTYRAG 2 cut(s) 155, 1119
SphI GCATGC 1 cut(s) 1186
SseBI AGGCCT 1 cut(s) 1090
SsiI CCGC 9 cut(s) 11, 195, 261, 456, 489, 633, 1064, 1071, 1522
SspDI GGCGCC 1 cut(s) 101
StuI AGGCCT 1 cut(s) 1090
StyD4I CCNGG 5 cut(s) 495, 886, 958, 1354, 1492
StyI CCWWGG 1 cut(s) 329
TaaI ACNGT 2 cut(s) 39, 725
TaiI ACGT 3 cut(s) 128, 357, 898
TaqII GACCGA 1 cut(s) 878
TatI WGTACW 2 cut(s) 63, 1515
TauI GCSGC 2 cut(s) 14, 1524
TfiI GAWTC 9 cut(s) 178, 217, 244, 271, 304, 472, 538, 1055, 1580
Tru1I TTAA 4 cut(s) 933, 1026, 1128, 1487
Tru9I TTAA 4 cut(s) 933, 1026, 1128, 1487
TscAI CASTG 4 cut(s) 42, 48, 631, 1474
TseFI GTSAC 4 cut(s) 33, 135, 1288, 1469
TseI GCWGC 4 cut(s) 621, 630, 1046, 1445
Tsp45I GTSAC 4 cut(s) 33, 135, 1288, 1469
TspDTI ATGAA 1 cut(s) 1232
TspGWI ACGGA 8 cut(s) 123, 369, 385, 390, 406, 1023, 1323, 1557
TspRI CASTG 4 cut(s) 42, 48, 631, 1474
Tth111I GACNNNGTC 1 cut(s) 1494
VneI GTGCAC 1 cut(s) 1461
VpaK11BI GGWCC 3 cut(s) 316, 943, 996
VspI ATTAAT 1 cut(s) 1128
XagI CCTNNNNNAGG 2 cut(s) 500, 789
XapI RAATTY 3 cut(s) 89, 336, 1114
XceI RCATGY 2 cut(s) 1186, 1255
XhoI CTCGAG 1 cut(s) 155
XmiI GTMKAC 1 cut(s) 351
ZraI GACGTC 1 cut(s) 126
ZrmI AGTACT 1 cut(s) 65
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.