RchiOBHm_Chr5g0019351

zinc finger CCCH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000602
Physical Location & Seq
Reverse (-)
13836410 .. 13853120
16711 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ29948

Sequence Viewer

Length: 2460 bp
ATGGAGCTCTCTGAATCCTCCTCCTCTGTTTCCCCAAATCTGGATTTGCATATCGGCAACAGCAACGAAATCGACCAAGTTCAGCTCAATCATTCCGACATAGGGTCTCAACGGTCCACCGCCGCCGACCAGCAGCTGGACAATCACTCCGGTGGTGACGCGGCGGTTAGTCATTCCAGTCCCGATCCCGACGTTGTTGATGTCGTGGATCACGCTGTCGTTGATGAGATTGGGAGATTGGATTTGAGAGGAGACGATGTAGCGGTGGAGGTTGCGGCAGCGGAGGTAGAGGAGAAGAAAGAGGAAGGGGGAGAGGTTGAGGCGGAGGAGAAGAGTTCTAATGGTGGTGGTGGAGAAATCAATGAAAGTGAGAGACAGAGCGAGGAAGAAGAAAACAGGAGTGAGAATGGAGGTGAGGGAGAGAAGAAGGGGGGAGAATATAACAGAAGGTATCAGTACCCAGTGAGGCCTGAAGCTGAAGAGTGTTCCTTTTACCCCAAGACGGGGAATTGCAAGTTCGGTTCCAATCGCAGGTTTAATCACCCTGTTAGAAGGAAAAACAACCAGGTTTTTAAAGACAAGGTGAAGGAAAAGGATGAGTTGTCAGAGAAGCCAAGCCAGACAGAATGCAAGTATTACTTAAGGCCAGGGGGATGTAAGTATGGGGAAGCTTGCAGATACAACCATGGAAAAGGGAAACCTTCGGTTGCTCCAGTTGTGGAACTTAACTTTCTGGGACTGCCAATTCGACGGGGGAAGAGAGAGTGTCCCTACTATATGCGAAATGGCTCCTGCAAGTATGGATCAAACTGCAGGTTTAATCACCCTAATCCTACTGCTGCAGGAGGATCTGACCCTCCATCTGGATTTGATAATGGTGGACCTGCATCATTACAAGGTGGATCGCAATCATCATCTTGGTCTGCACCAAGATCATTGAATGAGACTCCGCTTTGTATGCCAATGATGATGCCACCATCTCAAGGGGTTCCTTCTCAAAATACAGAATGGAATGGCTATCAGTCACCAGTTTATCTAGAAAGAAGCATGCCTGCACGTCCACCATATGTTATCAACAACTCAGGGACCAAAACCAAAGTTTATAAACAATATCCACCGTCAAATCAAGTTGATGAATTTCAAGAACGACCTGGACAACGTTTGTGCAGTTTCTTTTTAAGAACAGGGGACTGTAAGTTTAAATCTAATTGCAAATATCATCATCCAAAAAGTCAGACTGAAGTATCCCCCTCATTTGCACTGAGTGACAAGGGCCTGCCTTTGAGACCATTGTTTCGACCTGCATACGCTATCATGCTGACACACCTCCGTTCCGAAGCACTTGAAAATTTTAAAATAAGACTGGAGCGATCATTGGTCCAAAGAGAAGGGTTTGCTTCATCCATTATTGCCCATTCTGAATCTTGCATGCGTGAGTTTGACCAAGCATGTGCAGATGTTGCCATAAATTCCAATGGGAATGCATATGGCATTGATAAGGAAAAAGCCAAAAGGAAACTTAAGTGCGATATAGAAGCATATGCATCATCTCAACTTGACGAACAATTGTCAAGATTGAAACTGGACTGTGAGAGACAACTTTGGGAAGCTTTAAGTCTTAATGATCCTATAGCGGCTCTGCTACGTGATGGTGACGACGACATCTGGAGGAAAAAAAGGGGACTTCTTCATGATGCCATAGAACTTGTAGATGAACGTTTTTCAAATGAGATTAATGGTTATGCGTTGGACCAAGGAAGAAGTGCCGAAATGTTGCAAATTTTGAGGGACTATGCAAGAAGAGTGGCGAAGGAAAAACCCAGACAGGAGGCTAGTTGTGTTCTGACTCACATGATTAATAGGTTTCTCCAAGCCTTCAATTACGATAGCGATGAAAATGCTAGAACTTGGACTGTGGGGGTTGACATTAGAATTATTACCCATAGTGCTCGCCATGAGTCTCTTAAGATTTTATCTACTCTGGCTGCCATTCGCCTGGATAAGACGCAAGATGATATTGAACGAGTTCTCTCTTCTACTTTAATCGGTGGAGAAATAAGTTCTACAAATGTTCTCGACTCAGTTACTTGGGATATGGTTTCTTCAAATGATACCCTAATTACACCACTGGAGTGCCAGTCGTTGTGGAGACAGTTCAAAGAACAAACCGAGCCTGCTATCTTTCAAGCTTATGCAACACAGGTGCTTCACCGGCGAATTAATAGCGCTCCAAATGACGATGCCCCAAATGACCCGGAATTTAGCCCATTTATATGGATAATTGTGGTTATAGTAGTGTTGTTGTCAACAGCCTATGGAATCCCTAACGCCGCATCTCTTGTACCTGAAATTCTAGCACTGCTGCCACGCTTCAGAAGTCAAGCTCTTACTCTTTCAGCCATAATTGTAGCTGTGAAGAAAATCGTAGAGGCCTACAGAAATCGTCGCTTGCAAAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-CCCH zf-CCCH_2

Protein Analysis

819

Amino Acids

91.61

Weight (kDa)

5.8

Isoelectric Point (pI)

56.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-CCCH PF00642 207 - 231 3.5e-06 Zinc finger C-x8-C-x5-C-x3-H type (and similar)
zf-CCCH PF00642 252 - 276 2.8e-09 Zinc finger C-x8-C-x5-C-x3-H type (and similar)
zf-CCCH_4 PF18044 256 - 276 5.7e-07 CCCH-type zinc finger
zf-CCCH PF00642 384 - 410 1.3e-06 Zinc finger C-x8-C-x5-C-x3-H type (and similar)
Sey1_3HB PF20428 433 - 741 6.4e-50 Sey1 three-helix bundle domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000602)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G48195 AT3G48440 AT5G63260 AT5G63260
fragaria_vesca FvH4_5g07100 FvH4_5g07100 FvH4_5g07100 FvH4_5g07100 FvH4_5g07100 FvH4_5g07100 FvH4_5g07100
malus_domestica MD06G1158800.v1.1 MD06G1159000.v1.1 MD06G1159200.v1.1 MD14G1165100.v1.1 MD14G1165300.v1.1 MD14G1165400.v1.1 MD14G1165500.v1.1
prunus_persica Prupe.5G158300_v2.0.a1 Prupe.5G158300_v2.0.a1 Prupe.5G158400_v2.0.a1 Prupe.5G158400_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158600_v2.0.a1 Prupe.5G158700_v2.0.a1 Prupe.5G158800_v2.0.a1 Prupe.5G158900_v2.0.a1 Prupe.5G159000_v2.0.a1 Prupe.5G159100_v2.0.a1 Prupe.5G159100_v2.0.a1
pyrus_communis pycom02g00910 pycom06g14200 pycom14g13760 pycom14g13790 pycom14g13800
rosa_chinensis RchiOBHm_Chr5g0019351 RchiOBHm_Chr5g0022771 RchiOBHm_Chr7g0191441 RchiOBHm_Chr7g0191531
rosa_laevigata RLG00000004449 RLG00000032440
rosa_multiflora Rmu_sc0001809.1_g000062 Rmu_sc0005292.1_g000027
rosa_roxburghii Rroxscaffold_1G00074260 Rroxscaffold_6G00390280 Rroxscaffold_7G00168660
rosa_rugosa Rorug05G0049600 Rorug05G0049700 Rorug05G0049800 Rorug06G0510400
rosa_samantha Rh5CG151400 Rh5DG140300 Rh7AG118400 Rh7BG120400 Rh7CG123200 Rh7DG121300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1104
Acc36I ACCTGC 4 cut(s) 522, 804, 892, 1309
AccB7I CCANNNNNTGG 1 cut(s) 136
AccII CGCG 1 cut(s) 161
AclI AACGTT 2 cut(s) 1159, 1717
AclWI GGATC 6 cut(s) 179, 216, 811, 856, 910, 1619
AcsI RAATTY 6 cut(s) 1136, 1348, 1468, 1779, 2258, 2349
AcuI CTGAAG 4 cut(s) 492, 498, 1260, 2356
AdeI CACNNNGTG 1 cut(s) 1265
AfaI GTAC 2 cut(s) 458, 2343
AfeI AGCGCT 1 cut(s) 2227
AfiI CCNNNNNNNGG 9 cut(s) 40, 102, 136, 502, 503, 504, 531, 863, 983
AflII CTTAAG 3 cut(s) 640, 1520, 1964
AhdI GACNNNNNGTC 1 cut(s) 103
AjiI CACGTC 1 cut(s) 1058
AjnI CCWGG 4 cut(s) 564, 646, 1150, 1995
AleI CACNNNNGTG 2 cut(s) 150, 2131
AluBI AGCT 9 cut(s) 7, 85, 136, 476, 671, 1610, 2189, 2384, 2411
AluI AGCT 9 cut(s) 7, 85, 136, 476, 671, 1610, 2189, 2384, 2411
Alw21I GWGCWC 2 cut(s) 9, 1951
Alw26I GTCTC 8 cut(s) 111, 246, 367, 938, 1279, 1588, 1965, 2143
AlwI GGATC 6 cut(s) 179, 216, 811, 856, 910, 1619
AlwNI CAGNNNCTG 1 cut(s) 136
Aor51HI AGCGCT 1 cut(s) 2227
AoxI GGCC 4 cut(s) 467, 644, 1273, 2430
ApeKI GCWGC 5 cut(s) 133, 278, 839, 1985, 2362
ApoI RAATTY 6 cut(s) 1136, 1348, 1468, 1779, 2258, 2349
ArsI GACNNNNNNTTYG 4 cut(s) 729, 761, 1278, 1310
AseI ATTAAT 3 cut(s) 1734, 1857, 2220
Asp700I GAANNNNTTC 1 cut(s) 2025
AspLEI GCGC 1 cut(s) 2228
AspS9I GGNCC 6 cut(s) 114, 881, 1086, 1273, 1378, 1750
AsuC2I CCSGG 1 cut(s) 2255
AsuHPI GGTGA 8 cut(s) 167, 425, 533, 595, 815, 1017, 1664, 2201
AvaII GGWCC 5 cut(s) 114, 881, 1086, 1378, 1750
BaeI ACNNNNGTAYC 2 cut(s) 1227, 1260
BanII GRGCYC 1 cut(s) 9
Bbv12I GWGCWC 2 cut(s) 9, 1951
BbvI GCAGC 5 cut(s) 145, 290, 826, 1972, 2349
BccI CCATC 3 cut(s) 868, 985, 1643
BcgI CGANNNNNNTGC 4 cut(s) 52, 86, 1880, 1914
BciT130I CCWGG 4 cut(s) 566, 648, 1152, 1997
BciVI GTATCC 1 cut(s) 1255
BcnI CCSGG 1 cut(s) 2255
BcoDI GTCTC 8 cut(s) 111, 246, 367, 938, 1279, 1588, 1965, 2143
BfaI CTAG 4 cut(s) 1037, 1833, 1902, 2354
BfmI CTRYAG 4 cut(s) 811, 840, 1629, 2434
BfoI RGCGCY 1 cut(s) 2229
BfrI CTTAAG 3 cut(s) 640, 1520, 1964
BfuAI ACCTGC 4 cut(s) 522, 804, 892, 1309
BfuI GTATCC 1 cut(s) 1255
Bme1390I CCNGG 5 cut(s) 566, 648, 1152, 1997, 2255
Bme18I GGWCC 5 cut(s) 114, 881, 1086, 1378, 1750
BmeRI GACNNNNNGTC 1 cut(s) 103
BmgBI CACGTC 1 cut(s) 1058
BmgT120I GGNCC 6 cut(s) 114, 881, 1086, 1273, 1378, 1750
BmiI GGNNCC 4 cut(s) 523, 790, 990, 1087
BmrFI CCNGG 5 cut(s) 566, 648, 1152, 1997, 2255
BmrI ACTGGG 1 cut(s) 455
BmsI GCATC 6 cut(s) 896, 960, 1553, 1684, 2230, 2342
BmuI ACTGGG 1 cut(s) 455
BpmI CTGGAG 4 cut(s) 696, 1385, 1687, 2150
BpuEI CTTGAG 1 cut(s) 966
BpuMI CCSGG 1 cut(s) 2255
BsaAI YACGTR 1 cut(s) 1646
BsaBI GATNNNNATC 1 cut(s) 907
BsaI GGTCTC 2 cut(s) 111, 1279
BsaJI CCNNGG 3 cut(s) 647, 685, 1753
BsaWI WCCGGW 1 cut(s) 149
BsaXI ACNNNNNCTCC 6 cut(s) 131, 161, 243, 273, 2123, 2153
Bsc4I CCNNNNNNNGG 9 cut(s) 40, 102, 136, 502, 503, 504, 531, 863, 983
Bse118I RCCGGY 1 cut(s) 2211
Bse1I ACTGG 8 cut(s) 177, 461, 713, 1028, 1368, 1587, 2133, 2137
Bse8I GATNNNNATC 1 cut(s) 907
BseBI CCWGG 4 cut(s) 566, 648, 1152, 1997
BseDI CCNNGG 3 cut(s) 647, 685, 1753
BseGI GGATG 4 cut(s) 601, 659, 1222, 1400
BseJI GATNNNNATC 1 cut(s) 907
BseLI CCNNNNNNNGG 9 cut(s) 40, 102, 136, 502, 503, 504, 531, 863, 983
BseMII CTCAG 3 cut(s) 1095, 1253, 2094
BseNI ACTGG 8 cut(s) 177, 461, 713, 1028, 1368, 1587, 2133, 2137
BseRI GAGGAG 5 cut(s) 10, 13, 264, 305, 341
BseXI GCAGC 5 cut(s) 145, 290, 826, 1972, 2349
BsgI GTGCAG 4 cut(s) 909, 1038, 1186, 1473
Bsh1236I CGCG 1 cut(s) 161
BshFI GGCC 4 cut(s) 469, 646, 1275, 2432
BsiHKAI GWGCWC 2 cut(s) 9, 1951
BsiSI CCGG 3 cut(s) 150, 2212, 2255
BslFI GGGAC 7 cut(s) 165, 750, 753, 1099, 1202, 1695, 1802
BslI CCNNNNNNNGG 9 cut(s) 40, 102, 136, 502, 503, 504, 531, 863, 983
BsmAI GTCTC 8 cut(s) 111, 246, 367, 938, 1279, 1588, 1965, 2143
BsmBI CGTCTC 1 cut(s) 246
BsmFI GGGAC 7 cut(s) 165, 750, 753, 1099, 1202, 1695, 1802
BsmI GAATGC 2 cut(s) 632, 1486
BsnI GGCC 4 cut(s) 469, 646, 1275, 2432
Bso31I GGTCTC 2 cut(s) 111, 1279
Bsp1286I GDGCHC 2 cut(s) 9, 1951
Bsp143I GATC 8 cut(s) 184, 208, 803, 848, 902, 932, 1370, 1624
Bsp19I CCATGG 1 cut(s) 685
BspANI GGCC 4 cut(s) 469, 646, 1275, 2432
BspCNI CTCAG 3 cut(s) 1094, 1254, 2093
BspFNI CGCG 1 cut(s) 161
BspHI TCATGA 1 cut(s) 1690
BspLI GGNNCC 4 cut(s) 523, 790, 990, 1087
BspMAI CTGCAG 2 cut(s) 815, 844
BspMI ACCTGC 4 cut(s) 522, 804, 892, 1309
BspPI GGATC 6 cut(s) 179, 216, 811, 856, 910, 1619
BspTI CTTAAG 3 cut(s) 640, 1520, 1964
BspTNI GGTCTC 2 cut(s) 111, 1279
BsrFI RCCGGY 1 cut(s) 2211
BsrI ACTGG 8 cut(s) 177, 461, 713, 1028, 1368, 1587, 2133, 2137
BssAI RCCGGY 1 cut(s) 2211
BssECI CCNNGG 3 cut(s) 647, 685, 1753
BssMI GATC 8 cut(s) 184, 208, 803, 848, 902, 932, 1370, 1624
BssT1I CCWWGG 2 cut(s) 685, 1753
Bst2UI CCWGG 4 cut(s) 566, 648, 1152, 1997
Bst4CI ACNGT 6 cut(s) 114, 1119, 1193, 1589, 1915, 2154
Bst6I CTCTTC 5 cut(s) 326, 474, 752, 1795, 2038
BstAFI CTTAAG 3 cut(s) 640, 1520, 1964
BstAPI GCANNNNNTGC 1 cut(s) 1460
BstBAI YACGTR 1 cut(s) 1646
BstC8I GCNNGC 8 cut(s) 673, 1049, 1053, 1277, 1430, 1951, 2175, 2450
BstDEI CTNAG 3 cut(s) 1081, 1262, 2080
BstDSI CCRYGG 1 cut(s) 685
BstF5I GGATG 4 cut(s) 601, 659, 1222, 1400
BstFNI CGCG 1 cut(s) 161
BstH2I RGCGCY 1 cut(s) 2229
BstHHI GCGC 1 cut(s) 2228
BstKTI GATC 8 cut(s) 187, 211, 806, 851, 905, 935, 1373, 1627
BstMAI GTCTC 8 cut(s) 111, 246, 367, 938, 1279, 1588, 1965, 2143
BstMBI GATC 8 cut(s) 184, 208, 803, 848, 902, 932, 1370, 1624
BstMWI GCNNNNNNNGC 3 cut(s) 958, 1460, 2212
BstNI CCWGG 4 cut(s) 566, 648, 1152, 1997
BstNSI RCATGY 3 cut(s) 1051, 1432, 1452
BstSCI CCNGG 5 cut(s) 564, 646, 1150, 1995, 2253
BstSFI CTRYAG 4 cut(s) 811, 840, 1629, 2434
BstUI CGCG 1 cut(s) 161
BstV1I GCAGC 5 cut(s) 145, 290, 826, 1972, 2349
BstX2I RGATCY 1 cut(s) 848
BstXI CCANNNNNNTGG 2 cut(s) 1996, 2274
BstYI RGATCY 1 cut(s) 848
BsuI GTATCC 1 cut(s) 1255
BsuRI GGCC 4 cut(s) 469, 646, 1275, 2432
BtgI CCRYGG 1 cut(s) 685
BtgZI GCGATG 1 cut(s) 1905
BtrI CACGTC 1 cut(s) 1058
BtsCI GGATG 4 cut(s) 601, 659, 1222, 1400
BtsI GCAGTG 1 cut(s) 2357
BtsIMutI CAGTG 4 cut(s) 468, 1259, 2126, 2357
BveI ACCTGC 4 cut(s) 522, 804, 892, 1309
Cac8I GCNNGC 8 cut(s) 673, 1049, 1053, 1277, 1430, 1951, 2175, 2450
CaiI CAGNNNCTG 1 cut(s) 136
CciI TCATGA 1 cut(s) 1690
CfoI GCGC 1 cut(s) 2228
Cfr10I RCCGGY 1 cut(s) 2211
Cfr13I GGNCC 6 cut(s) 114, 881, 1086, 1273, 1378, 1750
CseI GACGC 2 cut(s) 167, 2014
CsiI ACCWGGT 1 cut(s) 564
Csp6I GTAC 2 cut(s) 457, 2342
CspCI CAANNNNNGTGG 2 cut(s) 1785, 1820
CviAII CATG 8 cut(s) 686, 1048, 1315, 1429, 1449, 1691, 1852, 1955
CviQI GTAC 2 cut(s) 457, 2342
DdeI CTNAG 3 cut(s) 1081, 1262, 2080
DpnI GATC 8 cut(s) 186, 210, 805, 850, 904, 934, 1372, 1626
DpnII GATC 8 cut(s) 184, 208, 803, 848, 902, 932, 1370, 1624
DraI TTTAAA 3 cut(s) 574, 1201, 1354
DraIII CACNNNGTG 1 cut(s) 1265
DriI GACNNNNNGTC 1 cut(s) 103
Eam1104I CTCTTC 5 cut(s) 326, 474, 752, 1795, 2038
Eam1105I GACNNNNNGTC 1 cut(s) 103
EarI CTCTTC 5 cut(s) 326, 474, 752, 1795, 2038
EciI GGCGGA 1 cut(s) 338
Ecl136II GAGCTC 1 cut(s) 7
Eco130I CCWWGG 2 cut(s) 685, 1753
Eco147I AGGCCT 2 cut(s) 469, 2432
Eco24I GRGCYC 1 cut(s) 9
Eco31I GGTCTC 2 cut(s) 111, 1279
Eco47I GGWCC 5 cut(s) 114, 881, 1086, 1378, 1750
Eco47III AGCGCT 1 cut(s) 2227
Eco53kI GAGCTC 1 cut(s) 7
Eco57I CTGAAG 4 cut(s) 492, 498, 1260, 2356
EcoICRI GAGCTC 1 cut(s) 7
EcoO109I RGGNCCY 1 cut(s) 1273
EcoRII CCWGG 4 cut(s) 564, 646, 1150, 1995
EcoT14I CCWWGG 2 cut(s) 685, 1753
EcoT22I ATGCAT 2 cut(s) 1486, 1546
EcoT38I GRGCYC 1 cut(s) 9
ErhI CCWWGG 2 cut(s) 685, 1753
Esp3I CGTCTC 1 cut(s) 246
FaeI CATG 8 cut(s) 689, 1051, 1318, 1432, 1452, 1694, 1855, 1958
FalI AAGNNNNNCTT 2 cut(s) 623, 655
FaqI GGGAC 7 cut(s) 165, 750, 753, 1099, 1202, 1695, 1802
FatI CATG 8 cut(s) 685, 1047, 1314, 1428, 1448, 1690, 1851, 1954
FauNDI CATATG 3 cut(s) 1066, 1486, 1540
FokI GGATG 4 cut(s) 608, 666, 1209, 1387
FriOI GRGCYC 1 cut(s) 9
FspBI CTAG 4 cut(s) 1037, 1833, 1902, 2354
GlaI GCGC 1 cut(s) 2227
GsuI CTGGAG 4 cut(s) 696, 1385, 1687, 2150
HaeII RGCGCY 1 cut(s) 2229
HaeIII GGCC 4 cut(s) 469, 646, 1275, 2432
HapII CCGG 3 cut(s) 150, 2212, 2255
HgaI GACGC 2 cut(s) 167, 2014
HhaI GCGC 1 cut(s) 2228
Hin1II CATG 8 cut(s) 689, 1051, 1318, 1432, 1452, 1694, 1855, 1958
Hin6I GCGC 1 cut(s) 2226
HinP1I GCGC 1 cut(s) 2226
HincII GTYRAC 2 cut(s) 1924, 2307
HindII GTYRAC 2 cut(s) 1924, 2307
HindIII AAGCTT 3 cut(s) 669, 1608, 2187
HinfI GANTC 7 cut(s) 14, 946, 1421, 1846, 1958, 2078, 2319
HpaII CCGG 3 cut(s) 150, 2212, 2255
HphI GGTGA 8 cut(s) 167, 425, 533, 595, 815, 1017, 1664, 2201
Hpy166II GTNNAC 5 cut(s) 117, 881, 1061, 1924, 2307
Hpy188I TCNGA 9 cut(s) 13, 97, 607, 853, 1236, 1336, 1420, 1845, 2375
Hpy8I GTNNAC 5 cut(s) 117, 881, 1061, 1924, 2307
Hpy99I CGWCG 4 cut(s) 194, 753, 1661, 2448
HpyCH4III ACNGT 6 cut(s) 114, 1119, 1193, 1589, 1915, 2154
HpyCH4IV ACGT 5 cut(s) 192, 1057, 1159, 1645, 1717
HpyF10VI GCNNNNNNNGC 3 cut(s) 958, 1460, 2212
HpyF3I CTNAG 3 cut(s) 1081, 1262, 2080
HpySE526I ACGT 5 cut(s) 192, 1057, 1159, 1645, 1717
Hsp92II CATG 8 cut(s) 689, 1051, 1318, 1432, 1452, 1694, 1855, 1958
HspAI GCGC 1 cut(s) 2226
Kzo9I GATC 8 cut(s) 184, 208, 803, 848, 902, 932, 1370, 1624
LmnI GCTCC 5 cut(s) 4, 715, 794, 1366, 2233
Lsp1109I GCAGC 5 cut(s) 145, 290, 826, 1972, 2349
LweI GCATC 6 cut(s) 896, 960, 1553, 1684, 2230, 2342
MabI ACCWGGT 1 cut(s) 564
MaeI CTAG 4 cut(s) 1037, 1833, 1902, 2354
MaeII ACGT 5 cut(s) 192, 1057, 1159, 1645, 1717
MaeIII GTNAC 5 cut(s) 155, 1023, 1265, 1652, 2083
MalI GATC 8 cut(s) 186, 210, 805, 850, 904, 934, 1372, 1626
MboI GATC 8 cut(s) 184, 208, 803, 848, 902, 932, 1370, 1624
MfeI CAATTG 1 cut(s) 1565
MflI RGATCY 1 cut(s) 848
MhlI GDGCHC 2 cut(s) 9, 1951
MlyI GAGTC 4 cut(s) 940, 1840, 1967, 2072
MmeI TCCRAC 2 cut(s) 120, 1728
Mph1103I ATGCAT 2 cut(s) 1486, 1546
MroXI GAANNNNTTC 1 cut(s) 2025
MslI CAYNNNNRTG 3 cut(s) 150, 2131, 2272
MspA1I CMGCKG 2 cut(s) 136, 281
MspCI CTTAAG 3 cut(s) 640, 1520, 1964
MspI CCGG 3 cut(s) 150, 2212, 2255
MspR9I CCNGG 5 cut(s) 566, 648, 1152, 1997, 2255
MunI CAATTG 1 cut(s) 1565
Mva1269I GAATGC 2 cut(s) 632, 1486
MvaI CCWGG 4 cut(s) 566, 648, 1152, 1997
MvnI CGCG 1 cut(s) 161
MwoI GCNNNNNNNGC 3 cut(s) 958, 1460, 2212
NciI CCSGG 1 cut(s) 2255
NcoI CCATGG 1 cut(s) 685
NdeI CATATG 3 cut(s) 1066, 1486, 1540
NdeII GATC 8 cut(s) 184, 208, 803, 848, 902, 932, 1370, 1624
NlaIII CATG 8 cut(s) 689, 1051, 1318, 1432, 1452, 1694, 1855, 1958
NlaIV GGNNCC 4 cut(s) 523, 790, 990, 1087
NmuCI GTSAC 4 cut(s) 155, 1023, 1265, 1652
NsiI ATGCAT 2 cut(s) 1486, 1546
NspI RCATGY 3 cut(s) 1051, 1432, 1452
OliI CACNNNNGTG 2 cut(s) 150, 2131
PaeI GCATGC 2 cut(s) 1051, 1432
PagI TCATGA 1 cut(s) 1690
PceI AGGCCT 2 cut(s) 469, 2432
PctI GAATGC 2 cut(s) 632, 1486
PdmI GAANNNNTTC 1 cut(s) 2025
PfeI GAWTC 3 cut(s) 14, 1421, 2319
PflMI CCANNNNNTGG 1 cut(s) 136
PleI GAGTC 4 cut(s) 940, 1840, 1966, 2072
PpsI GAGTC 4 cut(s) 940, 1840, 1966, 2072
Ppu21I YACGTR 1 cut(s) 1646
PshBI ATTAAT 3 cut(s) 1734, 1857, 2220
PsiI TTATAA 1 cut(s) 1104
Psp124BI GAGCTC 1 cut(s) 9
Psp1406I AACGTT 2 cut(s) 1159, 1717
Psp6I CCWGG 4 cut(s) 564, 646, 1150, 1995
PspGI CCWGG 4 cut(s) 564, 646, 1150, 1995
PspN4I GGNNCC 4 cut(s) 523, 790, 990, 1087
PspPI GGNCC 6 cut(s) 114, 881, 1086, 1273, 1378, 1750
PstI CTGCAG 2 cut(s) 815, 844
PstNI CAGNNNCTG 1 cut(s) 136
PsuI RGATCY 1 cut(s) 848
PvuII CAGCTG 1 cut(s) 136
RsaI GTAC 2 cut(s) 458, 2343
RsaNI GTAC 2 cut(s) 457, 2342
RseI CAYNNNNRTG 3 cut(s) 150, 2131, 2272
SacI GAGCTC 1 cut(s) 9
Sau3AI GATC 8 cut(s) 184, 208, 803, 848, 902, 932, 1370, 1624
Sau96I GGNCC 6 cut(s) 114, 881, 1086, 1273, 1378, 1750
SchI GAGTC 4 cut(s) 940, 1840, 1967, 2072
ScrFI CCNGG 5 cut(s) 566, 648, 1152, 1997, 2255
SduI GDGCHC 2 cut(s) 9, 1951
SexAI ACCWGGT 1 cut(s) 564
SfaNI GCATC 6 cut(s) 896, 960, 1553, 1684, 2230, 2342
SfcI CTRYAG 4 cut(s) 811, 840, 1629, 2434
SgrAI CRCCGGYG 1 cut(s) 2211
SinI GGWCC 5 cut(s) 114, 881, 1086, 1378, 1750
SmiMI CAYNNNNRTG 3 cut(s) 150, 2131, 2272
SmlI CTYRAG 4 cut(s) 640, 981, 1520, 1964
SmoI CTYRAG 4 cut(s) 640, 981, 1520, 1964
SphI GCATGC 2 cut(s) 1051, 1432
SseBI AGGCCT 2 cut(s) 469, 2432
SspMI CTAG 4 cut(s) 1037, 1833, 1902, 2354
SstI GAGCTC 1 cut(s) 9
StuI AGGCCT 2 cut(s) 469, 2432
StyD4I CCNGG 5 cut(s) 564, 646, 1150, 1995, 2253
StyI CCWWGG 2 cut(s) 685, 1753
TaaI ACNGT 6 cut(s) 114, 1119, 1193, 1589, 1915, 2154
TaiI ACGT 5 cut(s) 195, 1060, 1162, 1648, 1720
TaqI TCGA 4 cut(s) 72, 748, 1297, 2076
TauI GCSGC 5 cut(s) 125, 164, 278, 1637, 2333
TfiI GAWTC 3 cut(s) 14, 1421, 2319
TscAI CASTG 4 cut(s) 468, 1266, 2133, 2364
TseFI GTSAC 4 cut(s) 155, 1023, 1265, 1652
TseI GCWGC 5 cut(s) 133, 278, 839, 1985, 2362
Tsp45I GTSAC 4 cut(s) 155, 1023, 1265, 1652
TspDTI ATGAA 6 cut(s) 378, 1149, 1389, 1679, 1728, 1908
TspGWI ACGGA 1 cut(s) 1319
TspRI CASTG 4 cut(s) 468, 1266, 2133, 2364
Van91I CCANNNNNTGG 1 cut(s) 136
Vha464I CTTAAG 3 cut(s) 640, 1520, 1964
VpaK11BI GGWCC 5 cut(s) 114, 881, 1086, 1378, 1750
VspI ATTAAT 3 cut(s) 1734, 1857, 2220
XapI RAATTY 6 cut(s) 1136, 1348, 1468, 1779, 2258, 2349
XbaI TCTAGA 1 cut(s) 1036
XceI RCATGY 3 cut(s) 1051, 1432, 1452
XmnI GAANNNNTTC 1 cut(s) 2025
XspI CTAG 4 cut(s) 1037, 1833, 1902, 2354
Zsp2I ATGCAT 2 cut(s) 1486, 1546
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.