AT3G48440

zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0000602
Physical Location & Seq
Forward (+)
17941046 .. 17943855
2810 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G48440.1

Sequence Viewer

Length: 1347 bp
ATGGTCAATTCCGAAGAAATTGCAGATGGGTTTGAGCCAAAACCTGTTTCTCGATCTTATTCTGGTGATTCATCTCATGATCGTTCTCTTTCCGATCTCAATCACGCAGCGGAGGACTTGAGTGATAAGCTTAAGAATGTGGGTTTGAATGAAGTTACGAAAGAGCAGAGTGAGAAGATGATGAGTGTCTCTGAGAGTAATGGAGGTTTAGATTCGAATGCAGTAGTCACCATCAATCAGGAAGAAGAAGAAGAAGAAGAAGACAGAGATGGTTATGGTTATGGTGATGGTTGGAGCGAGAACGAGAGTGAGAATGTGTATCCAGTGAGGCCAGGAGCAGAGGATTGTTCTTTTTATATGAGAACAGGGAGCTGCAAATTCGGATCCAGTTGCAAATTCAATCATCCTCTTGCCAGAAAATTCCAAATTGCTAGGGATAATAAAGTAAGAGAAAAGGAAGATGATGGTGGTAAATTGGGGCTGATAGATTGCAAGTATTACTTTAGGACTGGAGGGTGTAAGTATGGAGAAACTTGTAGATTCAACCATACCATACCAAAGTCTGGTCTGGCCTCAGCACCCGAGCTTAACTTCCTCGGCCTTCCTCTCAGACCGGGAGAAGTAGAATGCCCTTACTACATGCGCAATGGCTCCTGCAAATATGGAGCTGAGTGCAAATTCAATCATCCTGATCCTACAACCATCGGAGGAACTGACTCCCCATCATTTCGTGGTAATAATGGTGTATCCATTGGTACATTTTCTCCAAAGGCTACATTCCAAGCAAGTTCAACTTCCTGGTCTTCACCAAGGCATGTGAATGGTACATCTCCTTTTATTCCAGTCATGCTGTCACAAACTCATGGGGTTACATCTCAAAATCCAGAGTGGAATGGCTATCAGGCTTCTGTGTATTCATCTGAAAGGGGTGTGTTTTCTCCTTCCACCACATACCTAATGAACAATTCATCAGCTGAAACAAGTATGTTGCTGTCACAATACCGACATCAAATGCCTGCTGAAGAATTTCCAGAACGTCCAGACCAACCTGAGTGCAGTTATTATATGAAAACTGGGGACTGCAAGTTCAAATTCAATTGCAAATACCACCATCCTAAGAATCGTCTGCCGAAGCTGCCTCCTTATGCTCTCAATGACAAGGGTTTACCCCTTAGACCTGATCAAAACATTTGCACATATTACAGTCGATACGGCATCTGCAAATTCGGTCCAGCTTGTAGATTTGACCATTCCGTCCAGCCTCCATATTCGACAGAAAGCTCCCAGGCCATTGTAGAACCTCCTCAGGTCAGTGCAAATGGGAATGAAAGTGACGGTTGGAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-CCCH

Protein Analysis

448

Amino Acids

49.86

Weight (kDa)

5.42

Isoelectric Point (pI)

59.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-CCCH PF00642 112 - 136 5e-11 Zinc finger C-x8-C-x5-C-x3-H type (and similar)
zf-CCCH PF00642 163 - 183 3.1e-08 Zinc finger C-x8-C-x5-C-x3-H type (and similar)
zf-CCCH PF00642 205 - 230 5.4e-11 Zinc finger C-x8-C-x5-C-x3-H type (and similar)
zf-CCCH PF00642 394 - 418 8.2e-09 Zinc finger C-x8-C-x5-C-x3-H type (and similar)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000602)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G48195 AT3G48440 AT5G63260 AT5G63260
fragaria_vesca FvH4_5g07100 FvH4_5g07100 FvH4_5g07100 FvH4_5g07100 FvH4_5g07100 FvH4_5g07100 FvH4_5g07100
malus_domestica MD06G1158800.v1.1 MD06G1159000.v1.1 MD06G1159200.v1.1 MD14G1165100.v1.1 MD14G1165300.v1.1 MD14G1165400.v1.1 MD14G1165500.v1.1
prunus_persica Prupe.5G158300_v2.0.a1 Prupe.5G158300_v2.0.a1 Prupe.5G158400_v2.0.a1 Prupe.5G158400_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158600_v2.0.a1 Prupe.5G158700_v2.0.a1 Prupe.5G158800_v2.0.a1 Prupe.5G158900_v2.0.a1 Prupe.5G159000_v2.0.a1 Prupe.5G159100_v2.0.a1 Prupe.5G159100_v2.0.a1
pyrus_communis pycom02g00910 pycom06g14200 pycom14g13760 pycom14g13790 pycom14g13800
rosa_chinensis RchiOBHm_Chr5g0019351 RchiOBHm_Chr5g0022771 RchiOBHm_Chr7g0191441 RchiOBHm_Chr7g0191531
rosa_laevigata RLG00000004449 RLG00000032440
rosa_multiflora Rmu_sc0001809.1_g000062 Rmu_sc0005292.1_g000027
rosa_roxburghii Rroxscaffold_1G00074260 Rroxscaffold_6G00390280 Rroxscaffold_7G00168660
rosa_rugosa Rorug05G0049600 Rorug05G0049700 Rorug05G0049800 Rorug06G0510400
rosa_samantha Rh5CG151400 Rh5DG140300 Rh7AG118400 Rh7BG120400 Rh7CG123200 Rh7DG121300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1253
Acc16I TGCGCA 1 cut(s) 644
AccB7I CCANNNNNTGG 1 cut(s) 563
AciI CCGC 1 cut(s) 110
AclWI GGATC 3 cut(s) 378, 391, 686
AcsI RAATTY 7 cut(s) 377, 395, 419, 677, 1025, 1091, 1223
AcuI CTGAAG 1 cut(s) 1041
AfaI GTAC 2 cut(s) 757, 826
AfiI CCNNNNNNNGG 1 cut(s) 563
AflII CTTAAG 1 cut(s) 131
AgsI TTSAA 7 cut(s) 148, 400, 544, 682, 792, 1090, 1096
AjnI CCWGG 3 cut(s) 331, 797, 1284
AjuI GAANNNNNNNTTGG 2 cut(s) 31, 63
AloI GAACNNNNNNTCC 2 cut(s) 1070, 1102
AluBI AGCT 8 cut(s) 130, 372, 586, 668, 974, 1135, 1235, 1281
AluI AGCT 8 cut(s) 130, 372, 586, 668, 974, 1135, 1235, 1281
Alw26I GTCTC 1 cut(s) 193
AlwI GGATC 3 cut(s) 378, 391, 686
Ama87I CYCGRG 1 cut(s) 581
AoxI GGCC 4 cut(s) 329, 570, 598, 1287
ApeKI GCWGC 3 cut(s) 107, 372, 1135
ApoI RAATTY 7 cut(s) 377, 395, 419, 677, 1025, 1091, 1223
Asp700I GAANNNNTTC 1 cut(s) 1026
AspLEI GCGC 1 cut(s) 645
AspS9I GGNCC 1 cut(s) 1229
AsuC2I CCSGG 1 cut(s) 615
AsuHPI GGTGA 4 cut(s) 77, 220, 296, 798
AsuII TTCGAA 1 cut(s) 215
AvaI CYCGRG 1 cut(s) 581
AvaII GGWCC 1 cut(s) 1229
AxyI CCTNAGG 1 cut(s) 1305
BamHI GGATCC 1 cut(s) 383
BbsI GAAGAC 2 cut(s) 267, 795
BbvCI CCTCAGC 1 cut(s) 574
BbvI GCAGC 3 cut(s) 119, 359, 1122
BccI CCATC 8 cut(s) 20, 239, 263, 281, 458, 710, 730, 1119
BceAI ACGGC 1 cut(s) 1228
BcgI CGANNNNNNTGC 1 cut(s) 36
BciT130I CCWGG 3 cut(s) 333, 799, 1286
BciVI GTATCC 2 cut(s) 330, 757
BclI TGATCA 1 cut(s) 1180
BcnI CCSGG 1 cut(s) 615
BcoDI GTCTC 1 cut(s) 193
BfaI CTAG 1 cut(s) 432
BfrI CTTAAG 1 cut(s) 131
BfuI GTATCC 2 cut(s) 330, 757
BisI GCNGC 3 cut(s) 108, 373, 1136
BlsI GCNGC 3 cut(s) 109, 374, 1137
Bme1390I CCNGG 4 cut(s) 333, 615, 799, 1286
Bme18I GGWCC 1 cut(s) 1229
BmeT110I CYCGRG 1 cut(s) 581
BmgT120I GGNCC 1 cut(s) 1229
BmiI GGNNCC 2 cut(s) 385, 652
BmrFI CCNGG 4 cut(s) 333, 615, 799, 1286
BmrI ACTGGG 1 cut(s) 1083
BmsI GCATC 1 cut(s) 1224
BmuI ACTGGG 1 cut(s) 1083
BpiI GAAGAC 2 cut(s) 267, 795
BpmI CTGGAG 1 cut(s) 531
Bpu10I CCTNAGC 1 cut(s) 574
Bpu14I TTCGAA 1 cut(s) 215
BpuEI CTTGAG 1 cut(s) 139
BpuMI CCSGG 1 cut(s) 615
BsaBI GATNNNNATC 1 cut(s) 99
BsaJI CCNNGG 3 cut(s) 595, 809, 1284
BsaXI ACNNNNNCTCC 2 cut(s) 748, 778
Bsc4I CCNNNNNNNGG 1 cut(s) 563
Bse1I ACTGG 5 cut(s) 323, 387, 514, 842, 1078
Bse21I CCTNAGG 1 cut(s) 1305
Bse3DI GCAATG 1 cut(s) 652
Bse8I GATNNNNATC 1 cut(s) 99
BseBI CCWGG 3 cut(s) 333, 799, 1286
BseDI CCNNGG 3 cut(s) 595, 809, 1284
BseGI GGATG 3 cut(s) 403, 685, 1111
BseJI GATNNNNATC 1 cut(s) 99
BseLI CCNNNNNNNGG 1 cut(s) 563
BseMI GCAATG 1 cut(s) 652
BseMII CTCAG 6 cut(s) 183, 588, 622, 660, 1041, 1319
BseNI ACTGG 5 cut(s) 323, 387, 514, 842, 1078
BseRI GAGGAG 1 cut(s) 1293
BseXI GCAGC 3 cut(s) 119, 359, 1122
BsgI GTGCAG 1 cut(s) 1075
BshFI GGCC 4 cut(s) 331, 572, 600, 1289
BsiHKCI CYCGRG 1 cut(s) 581
BsiSI CCGG 1 cut(s) 614
BslFI GGGAC 1 cut(s) 1091
BslI CCNNNNNNNGG 1 cut(s) 563
BsmAI GTCTC 1 cut(s) 193
BsmFI GGGAC 1 cut(s) 1091
BsmI GAATGC 2 cut(s) 223, 632
BsnI GGCC 4 cut(s) 331, 572, 600, 1289
BsoBI CYCGRG 1 cut(s) 581
Bsp119I TTCGAA 1 cut(s) 215
Bsp143I GATC 6 cut(s) 53, 79, 94, 383, 691, 1180
BspACI CCGC 1 cut(s) 110
BspANI GGCC 4 cut(s) 331, 572, 600, 1289
BspCNI CTCAG 6 cut(s) 184, 587, 621, 661, 1042, 1318
BspHI TCATGA 1 cut(s) 76
BspLI GGNNCC 2 cut(s) 385, 652
BspPI GGATC 3 cut(s) 378, 391, 686
BspT104I TTCGAA 1 cut(s) 215
BspTI CTTAAG 1 cut(s) 131
BsrDI GCAATG 1 cut(s) 652
BsrI ACTGG 5 cut(s) 323, 387, 514, 842, 1078
BssECI CCNNGG 3 cut(s) 595, 809, 1284
BssMI GATC 6 cut(s) 53, 79, 94, 383, 691, 1180
BssT1I CCWWGG 1 cut(s) 809
Bst2UI CCWGG 3 cut(s) 333, 799, 1286
Bst4CI ACNGT 2 cut(s) 1205, 1337
BstAFI CTTAAG 1 cut(s) 131
BstBI TTCGAA 1 cut(s) 215
BstC8I GCNNGC 1 cut(s) 1017
BstDEI CTNAG 8 cut(s) 192, 574, 608, 669, 1050, 1116, 1172, 1305
BstF5I GGATG 3 cut(s) 403, 685, 1111
BstHHI GCGC 1 cut(s) 645
BstKTI GATC 6 cut(s) 56, 82, 97, 386, 694, 1183
BstMAI GTCTC 1 cut(s) 193
BstMBI GATC 6 cut(s) 53, 79, 94, 383, 691, 1180
BstMWI GCNNNNNNNGC 1 cut(s) 1135
BstNI CCWGG 3 cut(s) 333, 799, 1286
BstNSI RCATGY 2 cut(s) 643, 818
BstSCI CCNGG 4 cut(s) 331, 613, 797, 1284
BstV1I GCAGC 3 cut(s) 119, 359, 1122
BstV2I GAAGAC 2 cut(s) 267, 795
BstX2I RGATCY 1 cut(s) 383
BstYI RGATCY 1 cut(s) 383
Bsu36I CCTNAGG 1 cut(s) 1305
BsuI GTATCC 2 cut(s) 330, 757
BsuRI GGCC 4 cut(s) 331, 572, 600, 1289
BtsCI GGATG 3 cut(s) 403, 685, 1111
BtsIMutI CAGTG 2 cut(s) 330, 1318
Cac8I GCNNGC 1 cut(s) 1017
CciI TCATGA 1 cut(s) 76
CfoI GCGC 1 cut(s) 645
Cfr13I GGNCC 1 cut(s) 1229
Csp6I GTAC 2 cut(s) 756, 825
CviAII CATG 5 cut(s) 77, 640, 815, 847, 863
CviQI GTAC 2 cut(s) 756, 825
DdeI CTNAG 8 cut(s) 192, 574, 608, 669, 1050, 1116, 1172, 1305
DpnI GATC 6 cut(s) 55, 81, 96, 385, 693, 1182
DpnII GATC 6 cut(s) 53, 79, 94, 383, 691, 1180
DrdI GACNNNNNNGTC 1 cut(s) 1253
DseDI GACNNNNNNGTC 1 cut(s) 1253
Eco130I CCWWGG 1 cut(s) 809
Eco47I GGWCC 1 cut(s) 1229
Eco57I CTGAAG 1 cut(s) 1041
Eco81I CCTNAGG 1 cut(s) 1305
Eco88I CYCGRG 1 cut(s) 581
EcoRII CCWGG 3 cut(s) 331, 797, 1284
EcoT14I CCWWGG 1 cut(s) 809
ErhI CCWWGG 1 cut(s) 809
FaeI CATG 5 cut(s) 80, 643, 818, 850, 866
FalI AAGNNNNNCTT 4 cut(s) 485, 517, 778, 810
FaqI GGGAC 1 cut(s) 1091
FatI CATG 5 cut(s) 76, 639, 814, 846, 862
FbaI TGATCA 1 cut(s) 1180
Fnu4HI GCNGC 3 cut(s) 108, 373, 1136
FokI GGATG 3 cut(s) 390, 672, 1098
Fsp4HI GCNGC 3 cut(s) 108, 373, 1136
FspBI CTAG 1 cut(s) 432
FspI TGCGCA 1 cut(s) 644
GlaI GCGC 1 cut(s) 644
GluI GCNGC 3 cut(s) 108, 373, 1136
GsuI CTGGAG 1 cut(s) 531
HaeIII GGCC 4 cut(s) 331, 572, 600, 1289
HapII CCGG 1 cut(s) 614
HhaI GCGC 1 cut(s) 645
Hin1II CATG 5 cut(s) 80, 643, 818, 850, 866
Hin6I GCGC 1 cut(s) 643
HinP1I GCGC 1 cut(s) 643
HindIII AAGCTT 1 cut(s) 128
HinfI GANTC 5 cut(s) 68, 212, 540, 716, 1120
HpaII CCGG 1 cut(s) 614
HphI GGTGA 4 cut(s) 77, 220, 296, 798
Hpy166II GTNNAC 1 cut(s) 1166
Hpy188I TCNGA 7 cut(s) 13, 94, 193, 383, 611, 707, 922
Hpy188III TCNNGA 7 cut(s) 51, 77, 239, 689, 884, 1031, 1040
Hpy8I GTNNAC 1 cut(s) 1166
HpyAV CCTTC 2 cut(s) 611, 951
HpyCH4III ACNGT 2 cut(s) 1205, 1337
HpyCH4IV ACGT 1 cut(s) 1036
HpyF10VI GCNNNNNNNGC 1 cut(s) 1135
HpyF3I CTNAG 8 cut(s) 192, 574, 608, 669, 1050, 1116, 1172, 1305
HpySE526I ACGT 1 cut(s) 1036
Hsp92II CATG 5 cut(s) 80, 643, 818, 850, 866
HspAI GCGC 1 cut(s) 643
Ksp22I TGATCA 1 cut(s) 1180
Kzo9I GATC 6 cut(s) 53, 79, 94, 383, 691, 1180
LmnI GCTCC 6 cut(s) 294, 335, 369, 656, 665, 1286
Lsp1109I GCAGC 3 cut(s) 119, 359, 1122
LweI GCATC 1 cut(s) 1224
MaeI CTAG 1 cut(s) 432
MaeII ACGT 1 cut(s) 1036
MaeIII GTNAC 6 cut(s) 154, 226, 852, 868, 993, 1331
MalI GATC 6 cut(s) 55, 81, 96, 385, 693, 1182
MboI GATC 6 cut(s) 53, 79, 94, 383, 691, 1180
MfeI CAATTG 1 cut(s) 1096
MflI RGATCY 1 cut(s) 383
MlyI GAGTC 1 cut(s) 710
MmeI TCCRAC 2 cut(s) 272, 1319
MroXI GAANNNNTTC 1 cut(s) 1026
MseI TTAA 2 cut(s) 132, 588
MslI CAYNNNNRTG 1 cut(s) 819
MspA1I CMGCKG 2 cut(s) 110, 974
MspCI CTTAAG 1 cut(s) 131
MspI CCGG 1 cut(s) 614
MspR9I CCNGG 4 cut(s) 333, 615, 799, 1286
MunI CAATTG 1 cut(s) 1096
Mva1269I GAATGC 2 cut(s) 223, 632
MvaI CCWGG 3 cut(s) 333, 799, 1286
MwoI GCNNNNNNNGC 1 cut(s) 1135
NciI CCSGG 1 cut(s) 615
NdeII GATC 6 cut(s) 53, 79, 94, 383, 691, 1180
NlaIII CATG 5 cut(s) 80, 643, 818, 850, 866
NlaIV GGNNCC 2 cut(s) 385, 652
NmeAIII GCCGAG 1 cut(s) 576
NmuCI GTSAC 4 cut(s) 226, 852, 993, 1331
NsbI TGCGCA 1 cut(s) 644
NspI RCATGY 2 cut(s) 643, 818
NspV TTCGAA 1 cut(s) 215
PagI TCATGA 1 cut(s) 76
PctI GAATGC 2 cut(s) 223, 632
PdmI GAANNNNTTC 1 cut(s) 1026
PfeI GAWTC 4 cut(s) 68, 212, 540, 1120
PflMI CCANNNNNTGG 1 cut(s) 563
PkrI GCNGC 3 cut(s) 109, 374, 1137
PleI GAGTC 1 cut(s) 710
PpsI GAGTC 1 cut(s) 710
Psp6I CCWGG 3 cut(s) 331, 797, 1284
PspGI CCWGG 3 cut(s) 331, 797, 1284
PspN4I GGNNCC 2 cut(s) 385, 652
PspPI GGNCC 1 cut(s) 1229
PsuI RGATCY 1 cut(s) 383
PvuII CAGCTG 1 cut(s) 974
RsaI GTAC 2 cut(s) 757, 826
RsaNI GTAC 2 cut(s) 756, 825
RseI CAYNNNNRTG 1 cut(s) 819
SaqAI TTAA 2 cut(s) 132, 588
SatI GCNGC 3 cut(s) 108, 373, 1136
Sau3AI GATC 6 cut(s) 53, 79, 94, 383, 691, 1180
Sau96I GGNCC 1 cut(s) 1229
SchI GAGTC 1 cut(s) 710
ScrFI CCNGG 4 cut(s) 333, 615, 799, 1286
SfaNI GCATC 1 cut(s) 1224
SfuI TTCGAA 1 cut(s) 215
SinI GGWCC 1 cut(s) 1229
SmiMI CAYNNNNRTG 1 cut(s) 819
SmlI CTYRAG 2 cut(s) 118, 131
SmoI CTYRAG 2 cut(s) 118, 131
SsiI CCGC 1 cut(s) 110
SspMI CTAG 1 cut(s) 432
StyD4I CCNGG 4 cut(s) 331, 613, 797, 1284
StyI CCWWGG 1 cut(s) 809
TaaI ACNGT 2 cut(s) 1205, 1337
TaiI ACGT 1 cut(s) 1039
TaqI TCGA 4 cut(s) 52, 215, 1207, 1271
TaqII GACCGA 1 cut(s) 1217
TfiI GAWTC 4 cut(s) 68, 212, 540, 1120
Tru1I TTAA 2 cut(s) 132, 588
Tru9I TTAA 2 cut(s) 132, 588
TscAI CASTG 2 cut(s) 330, 1318
TseFI GTSAC 4 cut(s) 226, 852, 993, 1331
TseI GCWGC 3 cut(s) 107, 372, 1135
Tsp45I GTSAC 4 cut(s) 226, 852, 993, 1331
TspDTI ATGAA 7 cut(s) 60, 165, 906, 957, 974, 1082, 1341
TspGWI ACGGA 1 cut(s) 1243
TspRI CASTG 2 cut(s) 330, 1318
Van91I CCANNNNNTGG 1 cut(s) 563
Vha464I CTTAAG 1 cut(s) 131
VpaK11BI GGWCC 1 cut(s) 1229
XapI RAATTY 7 cut(s) 377, 395, 419, 677, 1025, 1091, 1223
XceI RCATGY 2 cut(s) 643, 818
XmnI GAANNNNTTC 1 cut(s) 1026
XspI CTAG 1 cut(s) 432
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.