Prupe.5G158600_v2.0.a1

zinc finger CCCH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0000602
Physical Location & Seq
Reverse (-)
14060294 .. 14061308
1015 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G158600.1

Sequence Viewer

Length: 249 bp
ATGCCTACCCCTCCACCATATGTTATGAACTACTCGGTAACTGAAACTAACGCCTATGAACAACATCCACAGCAGAAGCAAGTTGAACAACTCCCAGAACGACCTGGGCAACCTGCTTGCATTTACTTCTCAAGAACAGGGGATTGTAAGTTTATATCTAATTGCAAATATCACCATCCAAAAAATCAGACTGCATTGTTCCCCTCATGTGCACTGAGTGAAAAAGGCCACCCTTTGAGACTAGGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-CCCH zf-CCCH_2

Protein Analysis

83

Amino Acids

9.33

Weight (kDa)

8.4

Isoelectric Point (pI)

59.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000602)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G48195 AT3G48440 AT5G63260 AT5G63260
fragaria_vesca FvH4_5g07100 FvH4_5g07100 FvH4_5g07100 FvH4_5g07100 FvH4_5g07100 FvH4_5g07100 FvH4_5g07100
malus_domestica MD06G1158800.v1.1 MD06G1159000.v1.1 MD06G1159200.v1.1 MD14G1165100.v1.1 MD14G1165300.v1.1 MD14G1165400.v1.1 MD14G1165500.v1.1
prunus_persica Prupe.5G158300_v2.0.a1 Prupe.5G158300_v2.0.a1 Prupe.5G158400_v2.0.a1 Prupe.5G158400_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158600_v2.0.a1 Prupe.5G158700_v2.0.a1 Prupe.5G158800_v2.0.a1 Prupe.5G158900_v2.0.a1 Prupe.5G159000_v2.0.a1 Prupe.5G159100_v2.0.a1 Prupe.5G159100_v2.0.a1
pyrus_communis pycom02g00910 pycom06g14200 pycom14g13760 pycom14g13790 pycom14g13800
rosa_chinensis RchiOBHm_Chr5g0019351 RchiOBHm_Chr5g0022771 RchiOBHm_Chr7g0191441 RchiOBHm_Chr7g0191531
rosa_laevigata RLG00000004449 RLG00000032440
rosa_multiflora Rmu_sc0001809.1_g000062 Rmu_sc0005292.1_g000027
rosa_roxburghii Rroxscaffold_1G00074260 Rroxscaffold_6G00390280 Rroxscaffold_7G00168660
rosa_rugosa Rorug05G0049600 Rorug05G0049700 Rorug05G0049800 Rorug06G0510400
rosa_samantha Rh5CG151400 Rh5DG140300 Rh7AG118400 Rh7BG120400 Rh7CG123200 Rh7DG121300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 121
AdeI CACNNNGTG 1 cut(s) 218
AgsI TTSAA 1 cut(s) 86
AjnI CCWGG 1 cut(s) 103
Alw21I GWGCWC 1 cut(s) 214
Alw26I GTCTC 1 cut(s) 232
Alw44I GTGCAC 1 cut(s) 210
AoxI GGCC 1 cut(s) 226
ApaLI GTGCAC 1 cut(s) 210
AsuHPI GGTGA 1 cut(s) 164
BaeGI GKGCMC 1 cut(s) 214
Bbv12I GWGCWC 1 cut(s) 214
BccI CCATC 1 cut(s) 183
BciT130I CCWGG 1 cut(s) 105
BcoDI GTCTC 1 cut(s) 232
BfaI CTAG 2 cut(s) 242, 247
BfuAI ACCTGC 1 cut(s) 121
Bme1390I CCNGG 1 cut(s) 105
BmrFI CCNGG 1 cut(s) 105
BpuEI CTTGAG 1 cut(s) 115
BsaJI CCNNGG 1 cut(s) 104
BseBI CCWGG 1 cut(s) 105
BseDI CCNNGG 1 cut(s) 104
BseGI GGATG 2 cut(s) 64, 175
BseMII CTCAG 1 cut(s) 206
BseSI GKGCMC 1 cut(s) 214
BshFI GGCC 1 cut(s) 228
BsiHKAI GWGCWC 1 cut(s) 214
BsmAI GTCTC 1 cut(s) 232
BsnI GGCC 1 cut(s) 228
Bsp1286I GDGCHC 1 cut(s) 214
BspANI GGCC 1 cut(s) 228
BspCNI CTCAG 1 cut(s) 207
BspMI ACCTGC 1 cut(s) 121
BssECI CCNNGG 1 cut(s) 104
Bst2UI CCWGG 1 cut(s) 105
BstC8I GCNNGC 1 cut(s) 118
BstDEI CTNAG 1 cut(s) 215
BstF5I GGATG 2 cut(s) 64, 175
BstMAI GTCTC 1 cut(s) 232
BstNI CCWGG 1 cut(s) 105
BstSCI CCNGG 1 cut(s) 103
BstSLI GKGCMC 1 cut(s) 214
BsuRI GGCC 1 cut(s) 228
BtsCI GGATG 2 cut(s) 64, 175
BtsIMutI CAGTG 1 cut(s) 212
BveI ACCTGC 1 cut(s) 121
Cac8I GCNNGC 1 cut(s) 118
CviAII CATG 1 cut(s) 207
CviJI RGCY 2 cut(s) 228, 246
CviKI_1 RGCY 2 cut(s) 228, 246
DdeI CTNAG 1 cut(s) 215
DraIII CACNNNGTG 1 cut(s) 218
EcoRII CCWGG 1 cut(s) 103
FaeI CATG 1 cut(s) 210
FaiI YATR 6 cut(s) 19, 21, 26, 57, 155, 208
FatI CATG 1 cut(s) 206
FauNDI CATATG 1 cut(s) 19
FokI GGATG 2 cut(s) 51, 162
FspBI CTAG 2 cut(s) 242, 247
HaeIII GGCC 1 cut(s) 228
Hin1II CATG 1 cut(s) 210
HphI GGTGA 1 cut(s) 164
Hpy166II GTNNAC 1 cut(s) 212
Hpy188I TCNGA 1 cut(s) 189
Hpy188III TCNNGA 1 cut(s) 132
Hpy8I GTNNAC 1 cut(s) 212
HpyCH4V TGCA 4 cut(s) 120, 165, 194, 212
HpyF3I CTNAG 1 cut(s) 215
Hsp92II CATG 1 cut(s) 210
LpnPI CCDG 5 cut(s) 90, 108, 117, 123, 126
MaeI CTAG 2 cut(s) 242, 247
MaeIII GTNAC 1 cut(s) 37
MhlI GDGCHC 1 cut(s) 214
MluCI AATT 1 cut(s) 160
MnlI CCTC 2 cut(s) 21, 214
MspR9I CCNGG 1 cut(s) 105
MvaI CCWGG 1 cut(s) 105
NdeI CATATG 1 cut(s) 19
NlaIII CATG 1 cut(s) 210
Psp6I CCWGG 1 cut(s) 103
PspGI CCWGG 1 cut(s) 103
ScrFI CCNGG 1 cut(s) 105
SduI GDGCHC 1 cut(s) 214
SetI ASST 2 cut(s) 106, 115
SmlI CTYRAG 1 cut(s) 130
SmoI CTYRAG 1 cut(s) 130
Sse9I AATT 1 cut(s) 160
SspMI CTAG 2 cut(s) 242, 247
StyD4I CCNGG 1 cut(s) 103
TasI AATT 1 cut(s) 160
TscAI CASTG 1 cut(s) 219
TspDTI ATGAA 2 cut(s) 41, 72
TspRI CASTG 1 cut(s) 219
VneI GTGCAC 1 cut(s) 210
XspI CTAG 2 cut(s) 242, 247
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.