Rh5DG140300

zinc finger CCCH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0000602
Physical Location & Seq
Reverse (-)
14244502 .. 14268308
23807 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG140300.1

Sequence Viewer

Length: 2454 bp
ATGGAGCTCTCTGAATCCTCCTCCTCTGTTTTCCCAAATCTGGATTTGCATATCGGCAACAGCAACGAAATCGACCAAGTTCAGCTCAATCATTCCGACATAGGGTCTCAACGGTCCACCGCCGCCGACCAGCAGCTGGACAATCACTCCGGTGGTGACGCGACGGTTAGTCATTCCAGTCCCGATCCTGACGTTGTTGATGTCGTGGATCACGCTGTCGTTGATGAGATTGAGAGATTGGATTTGAGAGGGGACGATGTAGCAGTGGAGGTTGCGGCAGCGGAGGTAGAGGAGAAGAAAGAGGAAGGGGGAGAGGTTGAGGCGGAGGAGAAGAGTTCTAATGGTGGTGGTGGAGAAATCGAAAACGGAAATGAAAGTGAGAGACAGAGCGAGGAAGAAGAGAGCAATGAAGGAGAAAACAGGAGTGAGAATGGAGGTGAGGGAGAGAAGAAGGGGGGAGAATATAACAGAAGGTATCGGTACCCAGTGAGGCCTGAAGCTGAAGACTGTTCCTTTTACCCCAAGACGGGGAATTGCAAGTTCGGTTCCAATTGCAGGTTTAATCACCCTGTTAGAAGGAAAAACAACCAGGTTTTTAAAGACAAGGTGAAGGAAAAGGATGCGTTGTCAGAGAAGCCAAGCCAGACAGAATGCAAGTATTACTTAAGGCCAGGGGGATGTAAGTATGGGAAAGCTTGCAGATACAACCATGGAAAAGGGAAACCTTCGGTTGCTCCAGTTGTGGAACTTAACTTTCTGGGACTACCAATTCGACGGGGGGGGAGAGAGTGTTCCTACTATATGGAAAATGGCTCCTGCAGGTATGGATCAAACTGCAGGTTTAATCACCCTGATCCTACTGCTGCATCATTACAAGGTGGATCGCAATCATCATCTTGGTCTGCACCAAGATCATTGAATGAGAGTCCGCTTTATATGCCAATGATGATGCCGCCATCTCAAGGGGTTCCTTCTCAAAATACAGAATGGAATGGCTATCAGGCACCAGTTTATCTAGAAAGAAGCATGCCTGCACGTCCGCCATATGTTATCAACAACTCGGGGACCAAAACCAATGTTTATAAACAATATCCACCGTCAAATCAAGTTGATGAATTTCCAGAACGACCTGGACAACGTTTGTGCAGTTTCTTTTTAAGAACAGGGGACTGTAAGTTTAAATCTAATTGCAAATATCATCATCCAAAAAGTCAGACTGCAGTATCCCCCTCATTTGCACTGAGTGACAAGGGCCTGCCTTTGAGACCATTGTTTCGACCTGCATACGCTATCATGCTGAAACACCTCCGTTCCGAAGCACTTGAAAATTTTAAAATAAGACTGGAGCGATCATTGGTCCAAAGAGAAGGGTTTGCTTCATCCGTTTTTGCCCATACTGAATCTTGCATGCGTGAGTTTGACCAAGCATGTGCAGATGCTTCGATAGATGTTGCCATAAATTCCAATGGGAATGCATATGGCGTTGATAAGGAAAAAGCCAAAAGGAAACTTAAGTGCGATATAGAAGCATATGCATCATCTCAACTTGACGAACAATTGTCAAGATTGAAACTGGACTGTGAGAGACAACTTTGGGAAGCTTTAAGTCTTAATGATCCTATAGCGGCTCTGCTACTTGATGGTGACGACGACATCTGGAGGAAAAAAAGGGGACTTCTTCATGATGCCATAGAACTTGTAGATGAACGTTTTTCAAATGAGATTAATGGTTATGCGTTGGACCAAGGAAGAAGTGCCGAAATGATGCAAATTTTGAGGGACCATGCAAGAAGAGTGGCGGAGGAAAAACCAAGACAGGAGGCTACTCGTGTTCTGACTCACATGGTTAATAGGTTTCTCCGAGCCTTCAATTACGATAGTGATGCAAATGCTAGAACTTGGACTGTGGAGGTTGACATTAGAATTATTATCCGGAATGCTCGCTATGAGTCTCTTAAGATTTTATCTACTCTGGCTGCCATTCGCCTGGATAAGACGCAAGATGATATTGAACGAGTTCTCTCTTCTACTTTAATCGATGGAGAAATAAGTTCTACAAATGTTCTTGACTCAGTTATTACTTGGGATATGGTTTCTTCAAATGATACCCTAATTACACCACTGGAGTGCCAGTTGTTGTGGAGACAGTTCAAAGAACAAACCGAGCCTGCCGTCTTTCAAGCTTATGCAACACAGGTGCTTCACCGGCGAAATAACGCTCCAAATGCCCCAAATGCCCCAAATGACCCGGAATTTAGCCCATTTTTATGGATAATTGTGGCTATAGTAGTGTTGTTGTCAACAGCCTATGGAATCCCTAACGCCGTATCTCTTGTACCTGAAATTCTAGCACTGCTGCCACGCTTCAGAAGTCAAGCTATGACTCTTTCAGCCATATTTGTAGTTGTGCCGAAAATCGTACAGGCCTACAGAAATCGTCGCTCGCAAAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-CCCH zf-CCCH_2

Protein Analysis

817

Amino Acids

91.75

Weight (kDa)

5.61

Isoelectric Point (pI)

53.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-CCCH PF00642 168 - 190 5.2e-08 Zinc finger C-x8-C-x5-C-x3-H type (and similar)
zf-CCCH PF00642 262 - 284 1.2e-08 Zinc finger C-x8-C-x5-C-x3-H type (and similar)
zf-CCCH_4 PF18044 264 - 284 2.6e-06 CCCH-type zinc finger
zf-CCCH PF00642 377 - 403 1.3e-06 Zinc finger C-x8-C-x5-C-x3-H type (and similar)
Sey1_3HB PF20428 426 - 740 2.9e-49 Sey1 three-helix bundle domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000602)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G48195 AT3G48440 AT5G63260 AT5G63260
fragaria_vesca FvH4_5g07100 FvH4_5g07100 FvH4_5g07100 FvH4_5g07100 FvH4_5g07100 FvH4_5g07100 FvH4_5g07100
malus_domestica MD06G1158800.v1.1 MD06G1159000.v1.1 MD06G1159200.v1.1 MD14G1165100.v1.1 MD14G1165300.v1.1 MD14G1165400.v1.1 MD14G1165500.v1.1
prunus_persica Prupe.5G158300_v2.0.a1 Prupe.5G158300_v2.0.a1 Prupe.5G158400_v2.0.a1 Prupe.5G158400_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158600_v2.0.a1 Prupe.5G158700_v2.0.a1 Prupe.5G158800_v2.0.a1 Prupe.5G158900_v2.0.a1 Prupe.5G159000_v2.0.a1 Prupe.5G159100_v2.0.a1 Prupe.5G159100_v2.0.a1
pyrus_communis pycom02g00910 pycom06g14200 pycom14g13760 pycom14g13790 pycom14g13800
rosa_chinensis RchiOBHm_Chr5g0019351 RchiOBHm_Chr5g0022771 RchiOBHm_Chr7g0191441 RchiOBHm_Chr7g0191531
rosa_laevigata RLG00000004449 RLG00000032440
rosa_multiflora Rmu_sc0001809.1_g000062 Rmu_sc0005292.1_g000027
rosa_roxburghii Rroxscaffold_1G00074260 Rroxscaffold_6G00390280 Rroxscaffold_7G00168660
rosa_rugosa Rorug05G0049600 Rorug05G0049700 Rorug05G0049800 Rorug06G0510400
rosa_samantha Rh5CG151400 Rh5DG140300 Rh7AG118400 Rh7BG120400 Rh7CG123200 Rh7DG121300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1083
Acc36I ACCTGC 4 cut(s) 546, 810, 828, 1288
Acc65I GGTACC 1 cut(s) 480
AccB1I GGYRCC 2 cut(s) 480, 1003
AccB7I CCANNNNNTGG 1 cut(s) 136
AccII CGCG 1 cut(s) 161
AccIII TCCGGA 1 cut(s) 1932
AclI AACGTT 2 cut(s) 1138, 1708
AclWI GGATC 6 cut(s) 179, 216, 835, 848, 889, 1610
AcsI RAATTY 6 cut(s) 1115, 1327, 1459, 1770, 2252, 2343
AcuI CTGAAG 3 cut(s) 516, 522, 2350
AdeI CACNNNGTG 1 cut(s) 1244
AfaI GTAC 3 cut(s) 482, 2337, 2421
AfiI CCNNNNNNNGG 8 cut(s) 40, 102, 136, 526, 527, 528, 555, 962
AflII CTTAAG 3 cut(s) 664, 1511, 1955
AgsI TTSAA 9 cut(s) 919, 1325, 1570, 1716, 1870, 2012, 2100, 2152, 2180
AhdI GACNNNNNGTC 2 cut(s) 103, 168
AjiI CACGTC 1 cut(s) 1037
AjnI CCWGG 4 cut(s) 588, 670, 1129, 1986
AleI CACNNNNGTG 2 cut(s) 150, 2125
AloI GAACNNNNNNTCC 2 cut(s) 775, 807
AluBI AGCT 8 cut(s) 7, 85, 136, 500, 695, 1601, 2183, 2378
AluI AGCT 8 cut(s) 7, 85, 136, 500, 695, 1601, 2183, 2378
Alw21I GWGCWC 1 cut(s) 9
Alw26I GTCTC 6 cut(s) 111, 376, 1258, 1579, 1956, 2137
AlwI GGATC 6 cut(s) 179, 216, 835, 848, 889, 1610
AlwNI CAGNNNCTG 1 cut(s) 136
Ama87I CYCGRG 1 cut(s) 1060
Aor13HI TCCGGA 1 cut(s) 1932
AoxI GGCC 4 cut(s) 491, 668, 1252, 2424
ApeKI GCWGC 5 cut(s) 133, 278, 863, 1976, 2356
ApoI RAATTY 6 cut(s) 1115, 1327, 1459, 1770, 2252, 2343
ArsI GACNNNNNNTTYG 4 cut(s) 753, 785, 1257, 1289
AseI ATTAAT 1 cut(s) 1725
Asp700I GAANNNNTTC 1 cut(s) 2016
Asp718I GGTACC 1 cut(s) 480
AspS9I GGNCC 6 cut(s) 114, 1065, 1252, 1357, 1741, 1780
AsuC2I CCSGG 1 cut(s) 2249
AsuHPI GGTGA 7 cut(s) 167, 449, 557, 619, 839, 1655, 2195
AvaI CYCGRG 1 cut(s) 1060
AvaII GGWCC 5 cut(s) 114, 1065, 1357, 1741, 1780
BaeI ACNNNNGTAYC 2 cut(s) 1206, 1239
BanI GGYRCC 2 cut(s) 480, 1003
BanII GRGCYC 1 cut(s) 9
BauI CACGAG 1 cut(s) 1827
BbsI GAAGAC 1 cut(s) 510
Bbv12I GWGCWC 1 cut(s) 9
BbvI GCAGC 5 cut(s) 145, 290, 850, 1963, 2343
BccI CCATC 3 cut(s) 964, 1634, 2033
BceAI ACGGC 2 cut(s) 2156, 2309
BcgI CGANNNNNNTGC 6 cut(s) 52, 86, 1422, 1456, 1865, 1899
BciT130I CCWGG 4 cut(s) 590, 672, 1131, 1988
BciVI GTATCC 1 cut(s) 1234
BcnI CCSGG 1 cut(s) 2249
BcoDI GTCTC 6 cut(s) 111, 376, 1258, 1579, 1956, 2137
BfaI CTAG 3 cut(s) 1016, 1893, 2348
BfmI CTRYAG 6 cut(s) 817, 835, 1218, 1620, 2283, 2428
BfrI CTTAAG 3 cut(s) 664, 1511, 1955
BfuAI ACCTGC 4 cut(s) 546, 810, 828, 1288
BfuI GTATCC 1 cut(s) 1234
BisI GCNGC 9 cut(s) 123, 134, 276, 279, 864, 953, 1626, 1977, 2357
BlsI GCNGC 9 cut(s) 124, 135, 277, 280, 865, 954, 1627, 1978, 2358
Bme1390I CCNGG 5 cut(s) 590, 672, 1131, 1988, 2249
Bme18I GGWCC 5 cut(s) 114, 1065, 1357, 1741, 1780
BmeRI GACNNNNNGTC 2 cut(s) 103, 168
BmeT110I CYCGRG 1 cut(s) 1060
BmgBI CACGTC 1 cut(s) 1037
BmgT120I GGNCC 6 cut(s) 114, 1065, 1252, 1357, 1741, 1780
BmiI GGNNCC 7 cut(s) 482, 547, 814, 969, 1005, 1066, 1781
BmrFI CCNGG 5 cut(s) 590, 672, 1131, 1988, 2249
BmrI ACTGGG 1 cut(s) 479
BmsI GCATC 8 cut(s) 610, 875, 939, 1426, 1544, 1675, 1755, 1873
BmuI ACTGGG 1 cut(s) 479
BpiI GAAGAC 1 cut(s) 510
BpmI CTGGAG 4 cut(s) 720, 1364, 1678, 2144
BpuEI CTTGAG 1 cut(s) 945
BpuMI CCSGG 1 cut(s) 2249
Bsa29I ATCGAT 1 cut(s) 2037
BsaBI GATNNNNATC 1 cut(s) 886
BsaI GGTCTC 2 cut(s) 111, 1258
BsaJI CCNNGG 3 cut(s) 671, 709, 1744
BsaWI WCCGGW 2 cut(s) 149, 1932
BsaXI ACNNNNNCTCC 6 cut(s) 131, 161, 775, 805, 2117, 2147
Bsc4I CCNNNNNNNGG 8 cut(s) 40, 102, 136, 526, 527, 528, 555, 962
Bse118I RCCGGY 1 cut(s) 2205
Bse1I ACTGG 8 cut(s) 177, 485, 737, 1007, 1347, 1578, 2127, 2131
Bse3DI GCAATG 1 cut(s) 412
Bse8I GATNNNNATC 1 cut(s) 886
BseAI TCCGGA 1 cut(s) 1932
BseBI CCWGG 4 cut(s) 590, 672, 1131, 1988
BseCI ATCGAT 1 cut(s) 2037
BseDI CCNNGG 3 cut(s) 671, 709, 1744
BseGI GGATG 4 cut(s) 625, 683, 1201, 1379
BseJI GATNNNNATC 1 cut(s) 886
BseLI CCNNNNNNNGG 8 cut(s) 40, 102, 136, 526, 527, 528, 555, 962
BseMI GCAATG 1 cut(s) 412
BseMII CTCAG 2 cut(s) 1232, 2085
BseNI ACTGG 8 cut(s) 177, 485, 737, 1007, 1347, 1578, 2127, 2131
BseRI GAGGAG 4 cut(s) 10, 13, 305, 341
BseXI GCAGC 5 cut(s) 145, 290, 850, 1963, 2343
BsgI GTGCAG 4 cut(s) 888, 1017, 1165, 1452
Bsh1236I CGCG 1 cut(s) 161
BshFI GGCC 4 cut(s) 493, 670, 1254, 2426
BshNI GGYRCC 2 cut(s) 480, 1003
BshVI ATCGAT 1 cut(s) 2037
BsiHKAI GWGCWC 1 cut(s) 9
BsiHKCI CYCGRG 1 cut(s) 1060
BsiSI CCGG 4 cut(s) 150, 1933, 2206, 2249
BslFI GGGAC 7 cut(s) 165, 266, 774, 1078, 1181, 1686, 1793
BslI CCNNNNNNNGG 8 cut(s) 40, 102, 136, 526, 527, 528, 555, 962
BsmAI GTCTC 6 cut(s) 111, 376, 1258, 1579, 1956, 2137
BsmFI GGGAC 7 cut(s) 165, 266, 774, 1078, 1181, 1686, 1793
BsmI GAATGC 3 cut(s) 656, 1477, 1942
BsnI GGCC 4 cut(s) 493, 670, 1254, 2426
Bso31I GGTCTC 2 cut(s) 111, 1258
BsoBI CYCGRG 1 cut(s) 1060
Bsp1286I GDGCHC 1 cut(s) 9
Bsp13I TCCGGA 1 cut(s) 1932
Bsp143I GATC 8 cut(s) 184, 208, 827, 853, 881, 911, 1349, 1615
Bsp19I CCATGG 1 cut(s) 709
BspANI GGCC 4 cut(s) 493, 670, 1254, 2426
BspCNI CTCAG 2 cut(s) 1233, 2084
BspDI ATCGAT 1 cut(s) 2037
BspEI TCCGGA 1 cut(s) 1932
BspFNI CGCG 1 cut(s) 161
BspHI TCATGA 1 cut(s) 1681
BspLI GGNNCC 7 cut(s) 482, 547, 814, 969, 1005, 1066, 1781
BspMAI CTGCAG 3 cut(s) 821, 839, 1222
BspMI ACCTGC 4 cut(s) 546, 810, 828, 1288
BspPI GGATC 6 cut(s) 179, 216, 835, 848, 889, 1610
BspT107I GGYRCC 2 cut(s) 480, 1003
BspTI CTTAAG 3 cut(s) 664, 1511, 1955
BspTNI GGTCTC 2 cut(s) 111, 1258
BsrDI GCAATG 1 cut(s) 412
BsrFI RCCGGY 1 cut(s) 2205
BsrI ACTGG 8 cut(s) 177, 485, 737, 1007, 1347, 1578, 2127, 2131
BssAI RCCGGY 1 cut(s) 2205
BssECI CCNNGG 3 cut(s) 671, 709, 1744
BssMI GATC 8 cut(s) 184, 208, 827, 853, 881, 911, 1349, 1615
BssSI CACGAG 1 cut(s) 1827
BssT1I CCWWGG 2 cut(s) 709, 1744
Bst2BI CACGAG 1 cut(s) 1827
Bst2UI CCWGG 4 cut(s) 590, 672, 1131, 1988
Bst4CI ACNGT 8 cut(s) 114, 166, 509, 1098, 1172, 1580, 1906, 2148
Bst6I CTCTTC 4 cut(s) 326, 393, 1786, 2029
BstAFI CTTAAG 3 cut(s) 664, 1511, 1955
BstC8I GCNNGC 8 cut(s) 697, 1028, 1032, 1256, 1409, 1942, 2169, 2444
BstDEI CTNAG 2 cut(s) 1241, 2071
BstDSI CCRYGG 1 cut(s) 709
BstF5I GGATG 4 cut(s) 625, 683, 1201, 1379
BstFNI CGCG 1 cut(s) 161
BstKTI GATC 8 cut(s) 187, 211, 830, 856, 884, 914, 1352, 1618
BstMAI GTCTC 6 cut(s) 111, 376, 1258, 1579, 1956, 2137
BstMBI GATC 8 cut(s) 184, 208, 827, 853, 881, 911, 1349, 1615
BstMWI GCNNNNNNNGC 4 cut(s) 937, 2206, 2225, 2234
BstNI CCWGG 4 cut(s) 590, 672, 1131, 1988
BstNSI RCATGY 3 cut(s) 1030, 1411, 1431
BstSCI CCNGG 5 cut(s) 588, 670, 1129, 1986, 2247
BstSFI CTRYAG 6 cut(s) 817, 835, 1218, 1620, 2283, 2428
BstUI CGCG 1 cut(s) 161
BstV1I GCAGC 5 cut(s) 145, 290, 850, 1963, 2343
BstV2I GAAGAC 1 cut(s) 510
BstXI CCANNNNNNTGG 2 cut(s) 1987, 2268
Bsu15I ATCGAT 1 cut(s) 2037
BsuI GTATCC 1 cut(s) 1234
BsuRI GGCC 4 cut(s) 493, 670, 1254, 2426
BsuTUI ATCGAT 1 cut(s) 2037
BtgI CCRYGG 1 cut(s) 709
BtrI CACGTC 1 cut(s) 1037
BtsCI GGATG 4 cut(s) 625, 683, 1201, 1379
BtsI GCAGTG 2 cut(s) 270, 2351
BtsIMutI CAGTG 5 cut(s) 270, 492, 1238, 2120, 2351
BveI ACCTGC 4 cut(s) 546, 810, 828, 1288
Cac8I GCNNGC 8 cut(s) 697, 1028, 1032, 1256, 1409, 1942, 2169, 2444
CaiI CAGNNNCTG 1 cut(s) 136
CciI TCATGA 1 cut(s) 1681
Cfr10I RCCGGY 1 cut(s) 2205
Cfr13I GGNCC 6 cut(s) 114, 1065, 1252, 1357, 1741, 1780
ClaI ATCGAT 1 cut(s) 2037
CseI GACGC 2 cut(s) 167, 2005
CsiI ACCWGGT 1 cut(s) 588
Csp6I GTAC 3 cut(s) 481, 2336, 2420
CspCI CAANNNNNGTGG 2 cut(s) 1776, 1811
CviAII CATG 8 cut(s) 710, 1027, 1294, 1408, 1428, 1682, 1784, 1843
CviQI GTAC 3 cut(s) 481, 2336, 2420
DdeI CTNAG 2 cut(s) 1241, 2071
DpnI GATC 8 cut(s) 186, 210, 829, 855, 883, 913, 1351, 1617
DpnII GATC 8 cut(s) 184, 208, 827, 853, 881, 911, 1349, 1615
DraI TTTAAA 3 cut(s) 598, 1180, 1333
DraIII CACNNNGTG 1 cut(s) 1244
DriI GACNNNNNGTC 2 cut(s) 103, 168
Eam1104I CTCTTC 4 cut(s) 326, 393, 1786, 2029
Eam1105I GACNNNNNGTC 2 cut(s) 103, 168
EarI CTCTTC 4 cut(s) 326, 393, 1786, 2029
EciI GGCGGA 3 cut(s) 338, 1029, 1814
Ecl136II GAGCTC 1 cut(s) 7
Eco130I CCWWGG 2 cut(s) 709, 1744
Eco147I AGGCCT 2 cut(s) 493, 2426
Eco24I GRGCYC 1 cut(s) 9
Eco31I GGTCTC 2 cut(s) 111, 1258
Eco47I GGWCC 5 cut(s) 114, 1065, 1357, 1741, 1780
Eco53kI GAGCTC 1 cut(s) 7
Eco57I CTGAAG 3 cut(s) 516, 522, 2350
Eco88I CYCGRG 1 cut(s) 1060
EcoICRI GAGCTC 1 cut(s) 7
EcoO109I RGGNCCY 1 cut(s) 1252
EcoRII CCWGG 4 cut(s) 588, 670, 1129, 1986
EcoT14I CCWWGG 2 cut(s) 709, 1744
EcoT22I ATGCAT 2 cut(s) 1477, 1537
EcoT38I GRGCYC 1 cut(s) 9
ErhI CCWWGG 2 cut(s) 709, 1744
FaeI CATG 8 cut(s) 713, 1030, 1297, 1411, 1431, 1685, 1787, 1846
FalI AAGNNNNNCTT 2 cut(s) 647, 679
FaqI GGGAC 7 cut(s) 165, 266, 774, 1078, 1181, 1686, 1793
FatI CATG 8 cut(s) 709, 1026, 1293, 1407, 1427, 1681, 1783, 1842
FauNDI CATATG 3 cut(s) 1045, 1477, 1531
Fnu4HI GCNGC 9 cut(s) 123, 134, 276, 279, 864, 953, 1626, 1977, 2357
FokI GGATG 4 cut(s) 632, 690, 1188, 1366
FriOI GRGCYC 1 cut(s) 9
Fsp4HI GCNGC 9 cut(s) 123, 134, 276, 279, 864, 953, 1626, 1977, 2357
FspBI CTAG 3 cut(s) 1016, 1893, 2348
GluI GCNGC 9 cut(s) 123, 134, 276, 279, 864, 953, 1626, 1977, 2357
GsuI CTGGAG 4 cut(s) 720, 1364, 1678, 2144
HaeIII GGCC 4 cut(s) 493, 670, 1254, 2426
HapII CCGG 4 cut(s) 150, 1933, 2206, 2249
HgaI GACGC 2 cut(s) 167, 2005
Hin1II CATG 8 cut(s) 713, 1030, 1297, 1411, 1431, 1685, 1787, 1846
HincII GTYRAC 2 cut(s) 1915, 2301
HindII GTYRAC 2 cut(s) 1915, 2301
HindIII AAGCTT 3 cut(s) 693, 1599, 2181
HinfI GANTC 8 cut(s) 14, 925, 1400, 1837, 1949, 2069, 2313, 2383
HpaII CCGG 4 cut(s) 150, 1933, 2206, 2249
HphI GGTGA 7 cut(s) 167, 449, 557, 619, 839, 1655, 2195
Hpy166II GTNNAC 3 cut(s) 117, 1915, 2301
Hpy188I TCNGA 8 cut(s) 13, 97, 631, 1215, 1315, 1836, 1862, 2369
Hpy8I GTNNAC 3 cut(s) 117, 1915, 2301
Hpy99I CGWCG 4 cut(s) 166, 777, 1652, 2442
HpyCH4III ACNGT 8 cut(s) 114, 166, 509, 1098, 1172, 1580, 1906, 2148
HpyCH4IV ACGT 4 cut(s) 192, 1036, 1138, 1708
HpyF10VI GCNNNNNNNGC 4 cut(s) 937, 2206, 2225, 2234
HpyF3I CTNAG 2 cut(s) 1241, 2071
HpySE526I ACGT 4 cut(s) 192, 1036, 1138, 1708
Hsp92II CATG 8 cut(s) 713, 1030, 1297, 1411, 1431, 1685, 1787, 1846
Kpn2I TCCGGA 1 cut(s) 1932
KpnI GGTACC 1 cut(s) 484
Kzo9I GATC 8 cut(s) 184, 208, 827, 853, 881, 911, 1349, 1615
LmnI GCTCC 5 cut(s) 4, 739, 818, 1345, 2224
Lsp1109I GCAGC 5 cut(s) 145, 290, 850, 1963, 2343
LweI GCATC 8 cut(s) 610, 875, 939, 1426, 1544, 1675, 1755, 1873
MabI ACCWGGT 1 cut(s) 588
MaeI CTAG 3 cut(s) 1016, 1893, 2348
MaeII ACGT 4 cut(s) 192, 1036, 1138, 1708
MaeIII GTNAC 3 cut(s) 155, 1244, 1643
MalI GATC 8 cut(s) 186, 210, 829, 855, 883, 913, 1351, 1617
MboI GATC 8 cut(s) 184, 208, 827, 853, 881, 911, 1349, 1615
MfeI CAATTG 2 cut(s) 550, 1556
MhlI GDGCHC 1 cut(s) 9
MlyI GAGTC 5 cut(s) 934, 1831, 1958, 2063, 2377
MmeI TCCRAC 2 cut(s) 120, 1719
Mph1103I ATGCAT 2 cut(s) 1477, 1537
MroI TCCGGA 1 cut(s) 1932
MroXI GAANNNNTTC 1 cut(s) 2016
MslI CAYNNNNRTG 3 cut(s) 150, 2125, 2266
MspA1I CMGCKG 2 cut(s) 136, 281
MspCI CTTAAG 3 cut(s) 664, 1511, 1955
MspI CCGG 4 cut(s) 150, 1933, 2206, 2249
MspR9I CCNGG 5 cut(s) 590, 672, 1131, 1988, 2249
MunI CAATTG 2 cut(s) 550, 1556
Mva1269I GAATGC 3 cut(s) 656, 1477, 1942
MvaI CCWGG 4 cut(s) 590, 672, 1131, 1988
MvnI CGCG 1 cut(s) 161
MwoI GCNNNNNNNGC 4 cut(s) 937, 2206, 2225, 2234
NciI CCSGG 1 cut(s) 2249
NcoI CCATGG 1 cut(s) 709
NdeI CATATG 3 cut(s) 1045, 1477, 1531
NdeII GATC 8 cut(s) 184, 208, 827, 853, 881, 911, 1349, 1615
NlaIII CATG 8 cut(s) 713, 1030, 1297, 1411, 1431, 1685, 1787, 1846
NlaIV GGNNCC 7 cut(s) 482, 547, 814, 969, 1005, 1066, 1781
NmuCI GTSAC 3 cut(s) 155, 1244, 1643
NsiI ATGCAT 2 cut(s) 1477, 1537
NspI RCATGY 3 cut(s) 1030, 1411, 1431
OliI CACNNNNGTG 2 cut(s) 150, 2125
PaeI GCATGC 2 cut(s) 1030, 1411
PagI TCATGA 1 cut(s) 1681
PceI AGGCCT 2 cut(s) 493, 2426
PctI GAATGC 3 cut(s) 656, 1477, 1942
PdmI GAANNNNTTC 1 cut(s) 2016
PfeI GAWTC 3 cut(s) 14, 1400, 2313
PflMI CCANNNNNTGG 1 cut(s) 136
PkrI GCNGC 9 cut(s) 124, 135, 277, 280, 865, 954, 1627, 1978, 2358
PleI GAGTC 5 cut(s) 933, 1831, 1957, 2063, 2377
PpsI GAGTC 5 cut(s) 933, 1831, 1957, 2063, 2377
PshBI ATTAAT 1 cut(s) 1725
PsiI TTATAA 1 cut(s) 1083
Psp124BI GAGCTC 1 cut(s) 9
Psp1406I AACGTT 2 cut(s) 1138, 1708
Psp6I CCWGG 4 cut(s) 588, 670, 1129, 1986
PspGI CCWGG 4 cut(s) 588, 670, 1129, 1986
PspN4I GGNNCC 7 cut(s) 482, 547, 814, 969, 1005, 1066, 1781
PspPI GGNCC 6 cut(s) 114, 1065, 1252, 1357, 1741, 1780
PstI CTGCAG 3 cut(s) 821, 839, 1222
PstNI CAGNNNCTG 1 cut(s) 136
PvuII CAGCTG 1 cut(s) 136
RsaI GTAC 3 cut(s) 482, 2337, 2421
RsaNI GTAC 3 cut(s) 481, 2336, 2420
RseI CAYNNNNRTG 3 cut(s) 150, 2125, 2266
SacI GAGCTC 1 cut(s) 9
SatI GCNGC 9 cut(s) 123, 134, 276, 279, 864, 953, 1626, 1977, 2357
Sau3AI GATC 8 cut(s) 184, 208, 827, 853, 881, 911, 1349, 1615
Sau96I GGNCC 6 cut(s) 114, 1065, 1252, 1357, 1741, 1780
SbfI CCTGCAGG 1 cut(s) 821
SchI GAGTC 5 cut(s) 934, 1831, 1958, 2063, 2377
ScrFI CCNGG 5 cut(s) 590, 672, 1131, 1988, 2249
SdaI CCTGCAGG 1 cut(s) 821
SduI GDGCHC 1 cut(s) 9
SexAI ACCWGGT 1 cut(s) 588
SfaNI GCATC 8 cut(s) 610, 875, 939, 1426, 1544, 1675, 1755, 1873
SfcI CTRYAG 6 cut(s) 817, 835, 1218, 1620, 2283, 2428
SgrAI CRCCGGYG 1 cut(s) 2205
SinI GGWCC 5 cut(s) 114, 1065, 1357, 1741, 1780
SmiMI CAYNNNNRTG 3 cut(s) 150, 2125, 2266
SmlI CTYRAG 4 cut(s) 664, 960, 1511, 1955
SmoI CTYRAG 4 cut(s) 664, 960, 1511, 1955
SphI GCATGC 2 cut(s) 1030, 1411
Sse8387I CCTGCAGG 1 cut(s) 821
SseBI AGGCCT 2 cut(s) 493, 2426
SspMI CTAG 3 cut(s) 1016, 1893, 2348
SstI GAGCTC 1 cut(s) 9
StuI AGGCCT 2 cut(s) 493, 2426
StyD4I CCNGG 5 cut(s) 588, 670, 1129, 1986, 2247
StyI CCWWGG 2 cut(s) 709, 1744
TaaI ACNGT 8 cut(s) 114, 166, 509, 1098, 1172, 1580, 1906, 2148
TaiI ACGT 4 cut(s) 195, 1039, 1141, 1711
TaqI TCGA 6 cut(s) 72, 360, 772, 1276, 1442, 2037
TauI GCSGC 4 cut(s) 125, 278, 955, 1628
TfiI GAWTC 3 cut(s) 14, 1400, 2313
TscAI CASTG 5 cut(s) 270, 492, 1245, 2127, 2358
TseFI GTSAC 3 cut(s) 155, 1244, 1643
TseI GCWGC 5 cut(s) 133, 278, 863, 1976, 2356
Tsp45I GTSAC 3 cut(s) 155, 1244, 1643
TspDTI ATGAA 6 cut(s) 387, 423, 1128, 1368, 1670, 1719
TspGWI ACGGA 3 cut(s) 381, 1298, 1372
TspRI CASTG 5 cut(s) 270, 492, 1245, 2127, 2358
Van91I CCANNNNNTGG 1 cut(s) 136
Vha464I CTTAAG 3 cut(s) 664, 1511, 1955
VpaK11BI GGWCC 5 cut(s) 114, 1065, 1357, 1741, 1780
VspI ATTAAT 1 cut(s) 1725
XapI RAATTY 6 cut(s) 1115, 1327, 1459, 1770, 2252, 2343
XbaI TCTAGA 1 cut(s) 1015
XceI RCATGY 3 cut(s) 1030, 1411, 1431
XmnI GAANNNNTTC 1 cut(s) 2016
XspI CTAG 3 cut(s) 1016, 1893, 2348
Zsp2I ATGCAT 2 cut(s) 1477, 1537
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.