pycom14g13800

zinc finger CCCH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr14
OG0000602
Physical Location & Seq
Reverse (-)
16655522 .. 16659133
3612 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom14g13800.1

Sequence Viewer

Length: 2025 bp
ATGATTAAGTTGCGTGTTCACAGAAAGGCAAGAAAATCCTCCAAAAGGCGGTTTTCACATCAACCCCGTTTCTATCTCTTTCCCTGTCTGTCAAGGAGAGTCAGTTCATTTCTTCTCAGAAGAGTTAGGGTTTTGAAATGTGGAGGGAGAATGGCAATCTCTGAAGCTATCTCTCTTGTTCCCCCAGATCCCGAAACCCCCAGCACCAGCCACGCTCATTCCGACCAGGGCTTTCTGCCTTCTTCTCCCGATCCCGCTCTCGCACCCTCTGGTGTCGATCATGCGGTCCTCGACGAGAAACTGGATTTGAAAGAGGAGGGGGAGGACGATGGAGAGCCTGATGAGGTGCAGAAGCTGGATTCAATAGAGAAGGTTGAGGAGGATGAAGCTGGTGAGTTGCAGAAGGTGGATTTGAAGGCAGAGGATGAAGCTGGTGAGTTGCAGAAGGTGGATTTGAAGGCGGAGGATGGAGCTGGTGAGTTGCAGAAGGTGGAATTTTATGAAGGCGTCGAAGTTCCCCTAAATCCGACGTCTGTTCCGTCACCTGCGCGGTCCGATCTCGTTCCTGAAATCTTTGATTGGATTCGGACACTCGACCCCCCCGTGCTCAATAGGATTAGGAATGGCGACCCTGCCCTCCTCCACGAGATTCAGCAATTTGACCCCGCCGTTGAGATTCGGAACTTCGAACTTTCCATCGTTGATGAGATTCGGAACTTCGACCGTGCTTTCCCTTCGGATTTGAAGGCGGAGGAGGGTGGAGAGGGAGTGGAGGAAGAAGAGAAGAGTTACGGTGCGCAAGAGGTTGAGATTGTAAATGGAGAGAAAAATGAGAGGCAGAGTGAGCAGAGCGAGCAGAGCGACGGAGGAGAAGGGTGGGGAGGAAATCAGGGGTGGGAGGAGGATGGCGGTGGGGTGGAGGAGAAGAAGGCGGTGGAAACTCAGGAAAGTAACAGAAGGTATCAGTACCCAGTGAGGCCGGAAGCTGAAGACTGTTCGTATTATCTAAAGACCGGGTCTTGCAAGTTTGGATCCAATTGCAAGTTTAATCACCCTGTTAGAAGGAAACCCAACCAGGTGCCTAAGGAAAGGGTCAAGGATAAGGACGAGTCGGCAGAGAATCCAAGCCAGACGGAATGCAAGTATTACTTGAGGTCGGGTGGATGTAAGTATGGGGAAAATTGCAGATACAGCCACAGCAGAGAGAAACCTTCTGTAGCTCCAGTTCTTGAGCTTAACTTTCTGGGCCTGCCAATTCGACCGGGTGAGAGGGAGTGTCCCTACTATATGCGAAATGGTTCCTGCAAGTATGCATCGAACTGCAGGTTTAACCACCCTGATCGATCTACAACTACAGGAGGATCTAATCCCCCATCTGGATATGGTAATGGTGGTCCTGCATCGTTACAAGGTGCATCACAATCAACAGTGGCACCGTGGTCTGCACCAAGGCCTTTGAATGAGGCTCCGGTTTACTCAACTTTGATGATTCCACCACCTCAAGTGGTTTCTTCTCAAAATTCAGAATGGAATGGTTATCAGGCTCCAGCATATGTACCAGAAAGAAGCATGCCTGCACGTCCGCCATACATGATGAACAACTCAGTGGCTGAAACCAACATCTACAAGCAATATCCACACCAGAATCAGGTTGAAGAGTTCCCAGAAAGACCTGGCCAACCCATATGCAATTATTTCTTAAGAACAGGGGATTGCAAGTTTAAATCTAATTGCAAATATCACCATCCAAAAAATCATACTGCAGTAGCCCCCCCAGTCATATTCAGTGACAAGGGCCTGCCTTTGAGACCGGATCAGAACATTTGCACACATTACAGTCGCTATGGCATTTGCAAATTTGGGCCAACTTGTAAATTTGACCACCCGTTACGTATATCATCTTCAACTACATCTGGTCCTGATCATCGACTTCCTTTCAGTGATTCGGCAACTACTAACGGGGCAGGAATGGCTGGGAGCAGAAACGGAACTGATGTTACAAGCCAGCCGCAGCCGGTGCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-CCCH zf-CCCH_2

Protein Analysis

675

Amino Acids

75.14

Weight (kDa)

5.52

Isoelectric Point (pI)

60.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-CCCH PF00642 330 - 352 2.6e-10 Zinc finger C-x8-C-x5-C-x3-H type (and similar)
zf-CCCH PF00642 377 - 401 1.4e-07 Zinc finger C-x8-C-x5-C-x3-H type (and similar)
zf_CCCH_4 PF18345 380 - 399 2.2e-06 Zinc finger domain
zf-CCCH_4 PF18044 380 - 399 5.5e-06 CCCH-type zinc finger
zf-CCCH PF00642 421 - 446 5.9e-08 Zinc finger C-x8-C-x5-C-x3-H type (and similar)
zf-CCCH PF00642 558 - 584 1.4e-06 Zinc finger C-x8-C-x5-C-x3-H type (and similar)
zf-CCCH PF00642 605 - 629 1.3e-08 Zinc finger C-x8-C-x5-C-x3-H type (and similar)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000602)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G48195 AT3G48440 AT5G63260 AT5G63260
fragaria_vesca FvH4_5g07100 FvH4_5g07100 FvH4_5g07100 FvH4_5g07100 FvH4_5g07100 FvH4_5g07100 FvH4_5g07100
malus_domestica MD06G1158800.v1.1 MD06G1159000.v1.1 MD06G1159200.v1.1 MD14G1165100.v1.1 MD14G1165300.v1.1 MD14G1165400.v1.1 MD14G1165500.v1.1
prunus_persica Prupe.5G158300_v2.0.a1 Prupe.5G158300_v2.0.a1 Prupe.5G158400_v2.0.a1 Prupe.5G158400_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158600_v2.0.a1 Prupe.5G158700_v2.0.a1 Prupe.5G158800_v2.0.a1 Prupe.5G158900_v2.0.a1 Prupe.5G159000_v2.0.a1 Prupe.5G159100_v2.0.a1 Prupe.5G159100_v2.0.a1
pyrus_communis pycom02g00910 pycom06g14200 pycom14g13760 pycom14g13790 pycom14g13800
rosa_chinensis RchiOBHm_Chr5g0019351 RchiOBHm_Chr5g0022771 RchiOBHm_Chr7g0191441 RchiOBHm_Chr7g0191531
rosa_laevigata RLG00000004449 RLG00000032440
rosa_multiflora Rmu_sc0001809.1_g000062 Rmu_sc0005292.1_g000027
rosa_roxburghii Rroxscaffold_1G00074260 Rroxscaffold_6G00390280 Rroxscaffold_7G00168660
rosa_rugosa Rorug05G0049600 Rorug05G0049700 Rorug05G0049800 Rorug06G0510400
rosa_samantha Rh5CG151400 Rh5DG140300 Rh7AG118400 Rh7BG120400 Rh7CG123200 Rh7DG121300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 553
AatII GACGTC 1 cut(s) 533
Acc16I TGCGCA 1 cut(s) 798
Acc36I ACCTGC 2 cut(s) 553, 1314
AccB1I GGYRCC 2 cut(s) 1078, 1432
AccBSI CCGCTC 1 cut(s) 257
AccII CGCG 1 cut(s) 550
AclWI GGATC 6 cut(s) 182, 245, 1026, 1039, 1369, 1821
AcoI YGGCCR 1 cut(s) 1675
AcsI RAATTY 4 cut(s) 494, 1519, 1856, 1874
AcuI CTGAAG 2 cut(s) 183, 1008
AcyI GRCGYC 2 cut(s) 507, 530
AfaI GTAC 2 cut(s) 968, 1557
AfiI CCNNNNNNNGG 4 cut(s) 45, 48, 1376, 1648
AflII CTTAAG 1 cut(s) 1699
AgsI TTSAA 9 cut(s) 136, 310, 363, 415, 457, 745, 1459, 1655, 1905
AjiI CACGTC 1 cut(s) 1580
AjnI CCWGG 3 cut(s) 225, 1074, 1672
AloI GAACNNNNNNTCC 2 cut(s) 88, 120
AluBI AGCT 8 cut(s) 167, 355, 389, 431, 473, 986, 1220, 1234
AluI AGCT 8 cut(s) 167, 355, 389, 431, 473, 986, 1220, 1234
Alw21I GWGCWC 1 cut(s) 609
Alw26I GTCTC 1 cut(s) 1801
AlwI GGATC 6 cut(s) 182, 245, 1026, 1039, 1369, 1821
AlwNI CAGNNNCTG 2 cut(s) 355, 1610
AoxI GGCC 6 cut(s) 977, 1246, 1451, 1675, 1795, 1862
ApeKI GCWGC 1 cut(s) 2011
ApoI RAATTY 4 cut(s) 494, 1519, 1856, 1874
Asp700I GAANNNNTTC 1 cut(s) 1297
AspLEI GCGC 2 cut(s) 550, 799
AspS9I GGNCC 7 cut(s) 286, 552, 1246, 1394, 1795, 1862, 1916
AsuC2I CCSGG 2 cut(s) 1015, 1263
AsuHPI GGTGA 7 cut(s) 404, 446, 488, 534, 1043, 1277, 1733
AsuII TTCGAA 1 cut(s) 687
AvaII GGWCC 4 cut(s) 286, 552, 1394, 1916
AxyI CCTNAGG 1 cut(s) 1083
BalI TGGCCA 1 cut(s) 1677
BamHI GGATCC 1 cut(s) 1031
BanI GGYRCC 2 cut(s) 1078, 1432
BarI GAAGNNNNNNTAC 2 cut(s) 1885, 1917
BauI CACGAG 1 cut(s) 644
BbsI GAAGAC 1 cut(s) 996
Bbv12I GWGCWC 1 cut(s) 609
BccI CCATC 6 cut(s) 323, 461, 704, 899, 1381, 1752
BceAI ACGGC 1 cut(s) 653
BciT130I CCWGG 3 cut(s) 227, 1076, 1674
BclI TGATCA 1 cut(s) 1921
BcnI CCSGG 2 cut(s) 1015, 1263
BcoDI GTCTC 1 cut(s) 1801
BfmI CTRYAG 4 cut(s) 1215, 1321, 1353, 1761
BfrI CTTAAG 1 cut(s) 1699
BfuAI ACCTGC 2 cut(s) 553, 1314
BisI GCNGC 2 cut(s) 2009, 2012
BlsI GCNGC 2 cut(s) 2010, 2013
Bme1390I CCNGG 5 cut(s) 227, 1015, 1076, 1263, 1674
Bme18I GGWCC 4 cut(s) 286, 552, 1394, 1916
BmgBI CACGTC 1 cut(s) 1580
BmgT120I GGNCC 7 cut(s) 286, 552, 1246, 1394, 1795, 1862, 1916
BmiI GGNNCC 6 cut(s) 1033, 1080, 1300, 1434, 1467, 1545
BmrFI CCNGG 5 cut(s) 227, 1015, 1076, 1263, 1674
BmrI ACTGGG 2 cut(s) 965, 1769
BmsI GCATC 3 cut(s) 1322, 1409, 1424
BmuI ACTGGG 2 cut(s) 965, 1769
BpiI GAAGAC 1 cut(s) 996
BpmI CTGGAG 2 cut(s) 1206, 1530
Bpu14I TTCGAA 1 cut(s) 687
BpuEI CTTGAG 3 cut(s) 1171, 1250, 1485
BpuMI CCSGG 2 cut(s) 1015, 1263
Bsa29I ATCGAT 1 cut(s) 1342
BsaAI YACGTR 1 cut(s) 1892
BsaHI GRCGYC 2 cut(s) 507, 530
BsaI GGTCTC 1 cut(s) 1801
BsaJI CCNNGG 3 cut(s) 226, 1436, 1448
BsaWI WCCGGW 2 cut(s) 1468, 1810
BsaXI ACNNNNNCTCC 4 cut(s) 88, 118, 753, 783
Bsc4I CCNNNNNNNGG 4 cut(s) 45, 48, 1376, 1648
Bse118I RCCGGY 1 cut(s) 2014
Bse1I ACTGG 4 cut(s) 306, 971, 1223, 1775
Bse21I CCTNAGG 1 cut(s) 1083
BseBI CCWGG 3 cut(s) 227, 1076, 1674
BseCI ATCGAT 1 cut(s) 1342
BseDI CCNNGG 3 cut(s) 226, 1436, 1448
BseGI GGATG 6 cut(s) 388, 430, 472, 910, 1169, 1744
BseLI CCNNNNNNNGG 4 cut(s) 45, 48, 1376, 1648
BseMII CTCAG 3 cut(s) 130, 956, 1617
BseNI ACTGG 4 cut(s) 306, 971, 1223, 1775
BseRI GAGGAG 7 cut(s) 329, 392, 629, 767, 882, 914, 935
BseYI CCCAGC 2 cut(s) 200, 1973
BsgI GTGCAG 3 cut(s) 368, 1428, 1560
Bsh1236I CGCG 1 cut(s) 550
Bsh1285I CGRYCG 2 cut(s) 724, 1262
BshFI GGCC 6 cut(s) 979, 1248, 1453, 1677, 1797, 1864
BshNI GGYRCC 2 cut(s) 1078, 1432
BshVI ATCGAT 1 cut(s) 1342
BsiEI CGRYCG 2 cut(s) 724, 1262
BsiHKAI GWGCWC 1 cut(s) 609
BsiSI CCGG 6 cut(s) 980, 1014, 1262, 1469, 1811, 2015
BslFI GGGAC 1 cut(s) 1263
BslI CCNNNNNNNGG 4 cut(s) 45, 48, 1376, 1648
BsmAI GTCTC 1 cut(s) 1801
BsmFI GGGAC 1 cut(s) 1263
BsmI GAATGC 1 cut(s) 1142
BsnI GGCC 6 cut(s) 979, 1248, 1453, 1677, 1797, 1864
Bso31I GGTCTC 1 cut(s) 1801
Bsp119I TTCGAA 1 cut(s) 687
Bsp1286I GDGCHC 1 cut(s) 609
BspANI GGCC 6 cut(s) 979, 1248, 1453, 1677, 1797, 1864
BspCNI CTCAG 3 cut(s) 129, 955, 1616
BspDI ATCGAT 1 cut(s) 1342
BspFNI CGCG 1 cut(s) 550
BspLI GGNNCC 6 cut(s) 1033, 1080, 1300, 1434, 1467, 1545
BspMAI CTGCAG 2 cut(s) 1325, 1765
BspMI ACCTGC 2 cut(s) 553, 1314
BspPI GGATC 6 cut(s) 182, 245, 1026, 1039, 1369, 1821
BspT104I TTCGAA 1 cut(s) 687
BspT107I GGYRCC 2 cut(s) 1078, 1432
BspTI CTTAAG 1 cut(s) 1699
BspTNI GGTCTC 1 cut(s) 1801
BsrBI CCGCTC 1 cut(s) 257
BsrFI RCCGGY 1 cut(s) 2014
BsrI ACTGG 4 cut(s) 306, 971, 1223, 1775
BssAI RCCGGY 1 cut(s) 2014
BssECI CCNNGG 3 cut(s) 226, 1436, 1448
BssNI GRCGYC 2 cut(s) 507, 530
BssSI CACGAG 1 cut(s) 644
BssT1I CCWWGG 1 cut(s) 1448
Bst2BI CACGAG 1 cut(s) 644
Bst2UI CCWGG 3 cut(s) 227, 1076, 1674
Bst4CI ACNGT 6 cut(s) 725, 794, 995, 1429, 1437, 1838
Bst6I CTCTTC 4 cut(s) 115, 774, 779, 1650
BstACI GRCGYC 2 cut(s) 507, 530
BstAFI CTTAAG 1 cut(s) 1699
BstAPI GCANNNNNTGC 1 cut(s) 2017
BstBAI YACGTR 1 cut(s) 1892
BstBI TTCGAA 1 cut(s) 687
BstC8I GCNNGC 6 cut(s) 854, 1250, 1571, 1575, 1799, 2006
BstDEI CTNAG 4 cut(s) 116, 942, 1083, 1603
BstDSI CCRYGG 1 cut(s) 1436
BstENI CCTNNNNNAGG 1 cut(s) 43
BstF5I GGATG 6 cut(s) 388, 430, 472, 910, 1169, 1744
BstFNI CGCG 1 cut(s) 550
BstHHI GCGC 2 cut(s) 550, 799
BstMAI GTCTC 1 cut(s) 1801
BstMCI CGRYCG 2 cut(s) 724, 1262
BstMWI GCNNNNNNNGC 6 cut(s) 844, 853, 858, 1191, 1970, 2017
BstNI CCWGG 3 cut(s) 227, 1076, 1674
BstNSI RCATGY 1 cut(s) 1573
BstSCI CCNGG 5 cut(s) 225, 1013, 1074, 1261, 1672
BstSFI CTRYAG 4 cut(s) 1215, 1321, 1353, 1761
BstSNI TACGTA 1 cut(s) 1892
BstUI CGCG 1 cut(s) 550
BstV2I GAAGAC 1 cut(s) 996
BstX2I RGATCY 3 cut(s) 187, 1031, 1361
BstYI RGATCY 3 cut(s) 187, 1031, 1361
Bsu15I ATCGAT 1 cut(s) 1342
Bsu36I CCTNAGG 1 cut(s) 1083
BsuRI GGCC 6 cut(s) 979, 1248, 1453, 1677, 1797, 1864
BsuTUI ATCGAT 1 cut(s) 1342
BtgI CCRYGG 1 cut(s) 1436
BtrI CACGTC 1 cut(s) 1580
BtsCI GGATG 6 cut(s) 388, 430, 472, 910, 1169, 1744
BtsIMutI CAGTG 5 cut(s) 978, 1434, 1611, 1792, 1945
BveI ACCTGC 2 cut(s) 553, 1314
Cac8I GCNNGC 6 cut(s) 854, 1250, 1571, 1575, 1799, 2006
CaiI CAGNNNCTG 2 cut(s) 355, 1610
CfoI GCGC 2 cut(s) 550, 799
Cfr10I RCCGGY 1 cut(s) 2014
Cfr13I GGNCC 7 cut(s) 286, 552, 1246, 1394, 1795, 1862, 1916
ClaI ATCGAT 1 cut(s) 1342
CpoI CGGWCCG 1 cut(s) 552
CseI GACGC 1 cut(s) 496
CsiI ACCWGGT 1 cut(s) 1074
Csp6I GTAC 2 cut(s) 967, 1556
CspI CGGWCCG 1 cut(s) 552
CviAII CATG 3 cut(s) 281, 1570, 1591
CviQI GTAC 2 cut(s) 967, 1556
DdeI CTNAG 4 cut(s) 116, 942, 1083, 1603
DraI TTTAAA 1 cut(s) 1723
EaeI YGGCCR 1 cut(s) 1675
Eam1104I CTCTTC 4 cut(s) 115, 774, 779, 1650
EarI CTCTTC 4 cut(s) 115, 774, 779, 1650
EciI GGCGGA 3 cut(s) 476, 764, 1572
Eco105I TACGTA 1 cut(s) 1892
Eco130I CCWWGG 1 cut(s) 1448
Eco147I AGGCCT 1 cut(s) 1453
Eco31I GGTCTC 1 cut(s) 1801
Eco47I GGWCC 4 cut(s) 286, 552, 1394, 1916
Eco57I CTGAAG 2 cut(s) 183, 1008
Eco81I CCTNAGG 1 cut(s) 1083
EcoNI CCTNNNNNAGG 1 cut(s) 43
EcoO109I RGGNCCY 1 cut(s) 1795
EcoRII CCWGG 3 cut(s) 225, 1074, 1672
EcoT14I CCWWGG 1 cut(s) 1448
EcoT22I ATGCAT 1 cut(s) 1315
ErhI CCWWGG 1 cut(s) 1448
FaeI CATG 3 cut(s) 284, 1573, 1594
FalI AAGNNNNNCTT 2 cut(s) 1133, 1165
FaqI GGGAC 1 cut(s) 1263
FatI CATG 3 cut(s) 280, 1569, 1590
FauI CCCGC 2 cut(s) 262, 673
FauNDI CATATG 2 cut(s) 1552, 1685
FbaI TGATCA 1 cut(s) 1921
Fnu4HI GCNGC 2 cut(s) 2009, 2012
FokI GGATG 6 cut(s) 395, 437, 479, 917, 1176, 1731
Fsp4HI GCNGC 2 cut(s) 2009, 2012
FspI TGCGCA 1 cut(s) 798
GlaI GCGC 2 cut(s) 549, 798
GluI GCNGC 2 cut(s) 2009, 2012
GsaI CCCAGC 2 cut(s) 204, 1977
GsuI CTGGAG 2 cut(s) 1206, 1530
HaeIII GGCC 6 cut(s) 979, 1248, 1453, 1677, 1797, 1864
HapII CCGG 6 cut(s) 980, 1014, 1262, 1469, 1811, 2015
HgaI GACGC 1 cut(s) 496
HhaI GCGC 2 cut(s) 550, 799
Hin1I GRCGYC 2 cut(s) 507, 530
Hin1II CATG 3 cut(s) 284, 1573, 1594
Hin6I GCGC 2 cut(s) 548, 797
HinP1I GCGC 2 cut(s) 548, 797
HpaII CCGG 6 cut(s) 980, 1014, 1262, 1469, 1811, 2015
HphI GGTGA 7 cut(s) 404, 446, 488, 534, 1043, 1277, 1733
Hpy166II GTNNAC 2 cut(s) 19, 1474
Hpy188III TCNNGA 7 cut(s) 191, 248, 566, 944, 1229, 1377, 1919
Hpy8I GTNNAC 2 cut(s) 19, 1474
Hpy99I CGWCG 4 cut(s) 296, 512, 532, 866
HpyCH4III ACNGT 6 cut(s) 725, 794, 995, 1429, 1437, 1838
HpyCH4IV ACGT 3 cut(s) 530, 1579, 1891
HpyF10VI GCNNNNNNNGC 6 cut(s) 844, 853, 858, 1191, 1970, 2017
HpyF3I CTNAG 4 cut(s) 116, 942, 1083, 1603
HpySE526I ACGT 3 cut(s) 530, 1579, 1891
Hsp92I GRCGYC 2 cut(s) 507, 530
Hsp92II CATG 3 cut(s) 284, 1573, 1594
HspAI GCGC 2 cut(s) 548, 797
Ksp22I TGATCA 1 cut(s) 1921
LmnI GCTCC 5 cut(s) 470, 1225, 1471, 1549, 1977
LweI GCATC 3 cut(s) 1322, 1409, 1424
MabI ACCWGGT 1 cut(s) 1074
MaeII ACGT 3 cut(s) 530, 1579, 1891
MaeIII GTNAC 7 cut(s) 540, 788, 950, 1404, 1787, 1887, 1996
MbiI CCGCTC 1 cut(s) 257
MfeI CAATTG 1 cut(s) 1036
MflI RGATCY 3 cut(s) 187, 1031, 1361
MhlI GDGCHC 1 cut(s) 609
MlsI TGGCCA 1 cut(s) 1677
MluNI TGGCCA 1 cut(s) 1677
MlyI GAGTC 2 cut(s) 108, 1118
MmeI TCCRAC 2 cut(s) 246, 551
Mox20I TGGCCA 1 cut(s) 1677
Mph1103I ATGCAT 1 cut(s) 1315
MroXI GAANNNNTTC 1 cut(s) 1297
MscI TGGCCA 1 cut(s) 1677
MseI TTAA 6 cut(s) 6, 1047, 1236, 1329, 1700, 1722
Msp20I TGGCCA 1 cut(s) 1677
MspCI CTTAAG 1 cut(s) 1699
MspI CCGG 6 cut(s) 980, 1014, 1262, 1469, 1811, 2015
MspR9I CCNGG 5 cut(s) 227, 1015, 1076, 1263, 1674
MunI CAATTG 1 cut(s) 1036
Mva1269I GAATGC 1 cut(s) 1142
MvaI CCWGG 3 cut(s) 227, 1076, 1674
MvnI CGCG 1 cut(s) 550
MwoI GCNNNNNNNGC 6 cut(s) 844, 853, 858, 1191, 1970, 2017
NciI CCSGG 2 cut(s) 1015, 1263
NdeI CATATG 2 cut(s) 1552, 1685
NlaIII CATG 3 cut(s) 284, 1573, 1594
NlaIV GGNNCC 6 cut(s) 1033, 1080, 1300, 1434, 1467, 1545
NmuCI GTSAC 2 cut(s) 540, 1787
NsbI TGCGCA 1 cut(s) 798
NsiI ATGCAT 1 cut(s) 1315
NspI RCATGY 1 cut(s) 1573
NspV TTCGAA 1 cut(s) 687
PaeI GCATGC 1 cut(s) 1573
PaqCI CACCTGC 1 cut(s) 553
PceI AGGCCT 1 cut(s) 1453
PcsI WCGNNNNNNNCGW 3 cut(s) 219, 536, 600
PctI GAATGC 1 cut(s) 1142
PdmI GAANNNNTTC 1 cut(s) 1297
PfeI GAWTC 9 cut(s) 359, 583, 649, 676, 709, 1120, 1489, 1645, 1943
PflFI GACNNNGTC 1 cut(s) 1015
PkrI GCNGC 2 cut(s) 2010, 2013
PleI GAGTC 2 cut(s) 107, 1117
PpsI GAGTC 2 cut(s) 107, 1117
Ppu21I YACGTR 1 cut(s) 1892
Psp6I CCWGG 3 cut(s) 225, 1074, 1672
PspFI CCCAGC 2 cut(s) 200, 1973
PspGI CCWGG 3 cut(s) 225, 1074, 1672
PspN4I GGNNCC 6 cut(s) 1033, 1080, 1300, 1434, 1467, 1545
PspPI GGNCC 7 cut(s) 286, 552, 1246, 1394, 1795, 1862, 1916
PsrI GAACNNNNNNTAC 4 cut(s) 1209, 1241, 1981, 2013
PstI CTGCAG 2 cut(s) 1325, 1765
PstNI CAGNNNCTG 2 cut(s) 355, 1610
PsuI RGATCY 3 cut(s) 187, 1031, 1361
PsyI GACNNNGTC 1 cut(s) 1015
RsaI GTAC 2 cut(s) 968, 1557
RsaNI GTAC 2 cut(s) 967, 1556
Rsr2I CGGWCCG 1 cut(s) 552
RsrII CGGWCCG 1 cut(s) 552
SaqAI TTAA 6 cut(s) 6, 1047, 1236, 1329, 1700, 1722
SatI GCNGC 2 cut(s) 2009, 2012
Sau96I GGNCC 7 cut(s) 286, 552, 1246, 1394, 1795, 1862, 1916
SchI GAGTC 2 cut(s) 108, 1118
ScrFI CCNGG 5 cut(s) 227, 1015, 1076, 1263, 1674
SduI GDGCHC 1 cut(s) 609
SexAI ACCWGGT 1 cut(s) 1074
SfaNI GCATC 3 cut(s) 1322, 1409, 1424
SfcI CTRYAG 4 cut(s) 1215, 1321, 1353, 1761
SfuI TTCGAA 1 cut(s) 687
SinI GGWCC 4 cut(s) 286, 552, 1394, 1916
SmlI CTYRAG 4 cut(s) 1150, 1229, 1500, 1699
SmoI CTYRAG 4 cut(s) 1150, 1229, 1500, 1699
SnaBI TACGTA 1 cut(s) 1892
SphI GCATGC 1 cut(s) 1573
SseBI AGGCCT 1 cut(s) 1453
StuI AGGCCT 1 cut(s) 1453
StyD4I CCNGG 5 cut(s) 225, 1013, 1074, 1261, 1672
StyI CCWWGG 1 cut(s) 1448
TaaI ACNGT 6 cut(s) 725, 794, 995, 1429, 1437, 1838
TaiI ACGT 3 cut(s) 533, 1582, 1894
TauI GCSGC 1 cut(s) 2011
TfiI GAWTC 9 cut(s) 359, 583, 649, 676, 709, 1120, 1489, 1645, 1943
Tru1I TTAA 6 cut(s) 6, 1047, 1236, 1329, 1700, 1722
Tru9I TTAA 6 cut(s) 6, 1047, 1236, 1329, 1700, 1722
TscAI CASTG 5 cut(s) 978, 1434, 1611, 1792, 1945
TseFI GTSAC 2 cut(s) 540, 1787
TseI GCWGC 1 cut(s) 2011
Tsp45I GTSAC 2 cut(s) 540, 1787
TspDTI ATGAA 5 cut(s) 96, 399, 441, 516, 1610
TspGWI ACGGA 4 cut(s) 528, 879, 1148, 2001
TspRI CASTG 5 cut(s) 978, 1434, 1611, 1792, 1945
Tth111I GACNNNGTC 1 cut(s) 1015
Vha464I CTTAAG 1 cut(s) 1699
VpaK11BI GGWCC 4 cut(s) 286, 552, 1394, 1916
XagI CCTNNNNNAGG 1 cut(s) 43
XapI RAATTY 4 cut(s) 494, 1519, 1856, 1874
XceI RCATGY 1 cut(s) 1573
XmnI GAANNNNTTC 1 cut(s) 1297
ZraI GACGTC 1 cut(s) 531
Zsp2I ATGCAT 1 cut(s) 1315
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.