pycom14g13760

zinc finger CCCH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr14
OG0000602
Physical Location & Seq
Reverse (-)
16605310 .. 16611396
6087 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom14g13760.2

Sequence Viewer

Length: 714 bp
ATGATGAGGGTCTTGAACTATTACATCAGCCCAGGACGACGTATAGGGGTACCTTCTGTAGCTGCAGCTGTGGAATTTAACTTTTTGGGCCTGCCAATTCGTCCGGGGGAGAAAGATTGTTCCTACTATATGCAAACTGCGACCTGCAAGTACGAAACAAACTGCATGTTTAACCACCCTGATCCTACAGCTGCCGGAGAATCTCGTCCGCAATCTGCGTATGGTAATGGTAGGGCTGCATCATTACAAGGTCTTCCAAATTCTCAAGGGATTAATTCTGAAACTACAGAATGGAATGGTTATCAGGCTCCAGCATATCTACCACATAGAAGCAGGCCTGCACCTCCACCATCTGTTCATAGAAGCATGCCGGCACCTGCACCTCCACCATATGTTATGAACAACTCGGTGACCGAAACCAACTACTGCGGACAATATGCACAGCAGACGCAAGCTGAAGAATTTCCAGAACGACCTGGTCAACCTGTTTGCTTCTATTTCACTCAAACAGGGGATTGTGTTAATAAATCTAATTGCCAATATCACCATCCAAAAAATCAGACTGCAGCGACCCCCTCATGTGCACTCAGTGACAGGGGCCTCCCCTTAAGACCGGGTCAGAACATTTGCACAGAGTACAGCCGCTTTGGCGTTTGCAGTTCTGGGCCAACCTGTATATTTGACCATCCGTCATTATCGGATTCCTTTCTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-CCCH zf-CCCH_2

Protein Analysis

238

Amino Acids

26.02

Weight (kDa)

6.97

Isoelectric Point (pI)

62.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000602)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G48195 AT3G48440 AT5G63260 AT5G63260
fragaria_vesca FvH4_5g07100 FvH4_5g07100 FvH4_5g07100 FvH4_5g07100 FvH4_5g07100 FvH4_5g07100 FvH4_5g07100
malus_domestica MD06G1158800.v1.1 MD06G1159000.v1.1 MD06G1159200.v1.1 MD14G1165100.v1.1 MD14G1165300.v1.1 MD14G1165400.v1.1 MD14G1165500.v1.1
prunus_persica Prupe.5G158300_v2.0.a1 Prupe.5G158300_v2.0.a1 Prupe.5G158400_v2.0.a1 Prupe.5G158400_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158600_v2.0.a1 Prupe.5G158700_v2.0.a1 Prupe.5G158800_v2.0.a1 Prupe.5G158900_v2.0.a1 Prupe.5G159000_v2.0.a1 Prupe.5G159100_v2.0.a1 Prupe.5G159100_v2.0.a1
pyrus_communis pycom02g00910 pycom06g14200 pycom14g13760 pycom14g13790 pycom14g13800
rosa_chinensis RchiOBHm_Chr5g0019351 RchiOBHm_Chr5g0022771 RchiOBHm_Chr7g0191441 RchiOBHm_Chr7g0191531
rosa_laevigata RLG00000004449 RLG00000032440
rosa_multiflora Rmu_sc0001809.1_g000062 Rmu_sc0005292.1_g000027
rosa_roxburghii Rroxscaffold_1G00074260 Rroxscaffold_6G00390280 Rroxscaffold_7G00168660
rosa_rugosa Rorug05G0049600 Rorug05G0049700 Rorug05G0049800 Rorug06G0510400
rosa_samantha Rh5CG151400 Rh5DG140300 Rh7AG118400 Rh7BG120400 Rh7CG123200 Rh7DG121300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 385
Acc36I ACCTGC 2 cut(s) 152, 385
Acc65I GGTACC 1 cut(s) 49
AccB1I GGYRCC 2 cut(s) 49, 373
AciI CCGC 3 cut(s) 209, 429, 643
AclWI GGATC 1 cut(s) 176
AcsI RAATTY 3 cut(s) 74, 259, 461
AcuI CTGAAG 1 cut(s) 477
AdeI CACNNNGTG 1 cut(s) 590
AfaI GTAC 3 cut(s) 51, 152, 638
AflII CTTAAG 1 cut(s) 607
AgsI TTSAA 1 cut(s) 16
AhdI GACNNNNNGTC 1 cut(s) 688
AjnI CCWGG 2 cut(s) 31, 475
AluBI AGCT 4 cut(s) 62, 68, 191, 455
AluI AGCT 4 cut(s) 62, 68, 191, 455
Alw21I GWGCWC 1 cut(s) 586
Alw44I GTGCAC 1 cut(s) 582
AlwI GGATC 1 cut(s) 176
AoxI GGCC 4 cut(s) 88, 335, 598, 665
ApaLI GTGCAC 1 cut(s) 582
ApeKI GCWGC 5 cut(s) 62, 65, 191, 236, 566
ApoI RAATTY 3 cut(s) 74, 259, 461
AseI ATTAAT 1 cut(s) 273
Asp700I GAANNNNTTC 1 cut(s) 462
Asp718I GGTACC 1 cut(s) 49
AspS9I GGNCC 3 cut(s) 88, 598, 665
AsuC2I CCSGG 2 cut(s) 105, 615
AsuHPI GGTGA 2 cut(s) 421, 536
BaeGI GKGCMC 1 cut(s) 586
BanI GGYRCC 2 cut(s) 49, 373
BbsI GAAGAC 1 cut(s) 245
Bbv12I GWGCWC 1 cut(s) 586
BbvI GCAGC 5 cut(s) 49, 77, 178, 223, 578
BccI CCATC 3 cut(s) 358, 555, 693
BciT130I CCWGG 2 cut(s) 33, 477
BcnI CCSGG 2 cut(s) 105, 615
BfmI CTRYAG 5 cut(s) 57, 63, 186, 285, 564
BfrI CTTAAG 1 cut(s) 607
BfuAI ACCTGC 2 cut(s) 152, 385
BglI GCCNNNNNGGC 1 cut(s) 648
BisI GCNGC 6 cut(s) 63, 66, 192, 237, 567, 643
BlsI GCNGC 6 cut(s) 64, 67, 193, 238, 568, 644
Bme1390I CCNGG 4 cut(s) 33, 105, 477, 615
BmeRI GACNNNNNGTC 1 cut(s) 688
BmgT120I GGNCC 3 cut(s) 88, 598, 665
BmiI GGNNCC 4 cut(s) 51, 309, 375, 599
BmrFI CCNGG 4 cut(s) 33, 105, 477, 615
BmsI GCATC 1 cut(s) 248
BpiI GAAGAC 1 cut(s) 245
BpmI CTGGAG 1 cut(s) 294
BpuEI CTTGAG 1 cut(s) 249
BpuMI CCSGG 2 cut(s) 105, 615
BsaJI CCNNGG 2 cut(s) 31, 104
Bse118I RCCGGY 1 cut(s) 370
BseBI CCWGG 2 cut(s) 33, 477
BseDI CCNNGG 2 cut(s) 31, 104
BseGI GGATG 2 cut(s) 547, 685
BseMII CTCAG 1 cut(s) 601
BseSI GKGCMC 1 cut(s) 586
BseXI GCAGC 5 cut(s) 49, 77, 178, 223, 578
BsgI GTGCAG 2 cut(s) 324, 363
BshFI GGCC 4 cut(s) 90, 337, 600, 667
BshNI GGYRCC 2 cut(s) 49, 373
BsiHKAI GWGCWC 1 cut(s) 586
BsiSI CCGG 4 cut(s) 104, 195, 371, 614
BsnI GGCC 4 cut(s) 90, 337, 600, 667
Bsp1286I GDGCHC 1 cut(s) 586
Bsp143I GATC 1 cut(s) 181
BspACI CCGC 3 cut(s) 209, 429, 643
BspANI GGCC 4 cut(s) 90, 337, 600, 667
BspCNI CTCAG 1 cut(s) 600
BspLI GGNNCC 4 cut(s) 51, 309, 375, 599
BspMAI CTGCAG 2 cut(s) 67, 568
BspMI ACCTGC 2 cut(s) 152, 385
BspPI GGATC 1 cut(s) 176
BspT107I GGYRCC 2 cut(s) 49, 373
BspTI CTTAAG 1 cut(s) 607
BsrFI RCCGGY 1 cut(s) 370
BssAI RCCGGY 1 cut(s) 370
BssECI CCNNGG 2 cut(s) 31, 104
BssMI GATC 1 cut(s) 181
Bst2UI CCWGG 2 cut(s) 33, 477
BstAFI CTTAAG 1 cut(s) 607
BstC8I GCNNGC 6 cut(s) 92, 335, 339, 368, 372, 453
BstDEI CTNAG 1 cut(s) 587
BstEII GGTNACC 1 cut(s) 409
BstF5I GGATG 2 cut(s) 547, 685
BstKTI GATC 1 cut(s) 184
BstMBI GATC 1 cut(s) 181
BstMWI GCNNNNNNNGC 1 cut(s) 648
BstNI CCWGG 2 cut(s) 33, 477
BstNSI RCATGY 2 cut(s) 169, 370
BstPI GGTNACC 1 cut(s) 409
BstSCI CCNGG 4 cut(s) 31, 103, 475, 613
BstSFI CTRYAG 5 cut(s) 57, 63, 186, 285, 564
BstSLI GKGCMC 1 cut(s) 586
BstV1I GCAGC 5 cut(s) 49, 77, 178, 223, 578
BstV2I GAAGAC 1 cut(s) 245
BsuRI GGCC 4 cut(s) 90, 337, 600, 667
BtsCI GGATG 2 cut(s) 547, 685
BtsIMutI CAGTG 1 cut(s) 595
BveI ACCTGC 2 cut(s) 152, 385
Cac8I GCNNGC 6 cut(s) 92, 335, 339, 368, 372, 453
Cfr10I RCCGGY 1 cut(s) 370
Cfr13I GGNCC 3 cut(s) 88, 598, 665
CseI GACGC 1 cut(s) 457
CsiI ACCWGGT 1 cut(s) 475
Csp6I GTAC 3 cut(s) 50, 151, 637
CviAII CATG 3 cut(s) 166, 367, 579
CviQI GTAC 3 cut(s) 50, 151, 637
DdeI CTNAG 1 cut(s) 587
DpnI GATC 1 cut(s) 183
DpnII GATC 1 cut(s) 181
DraIII CACNNNGTG 1 cut(s) 590
DriI GACNNNNNGTC 1 cut(s) 688
Eam1105I GACNNNNNGTC 1 cut(s) 688
Eco147I AGGCCT 1 cut(s) 337
Eco57I CTGAAG 1 cut(s) 477
Eco91I GGTNACC 1 cut(s) 409
EcoO109I RGGNCCY 1 cut(s) 598
EcoO65I GGTNACC 1 cut(s) 409
EcoRII CCWGG 2 cut(s) 31, 475
FaeI CATG 3 cut(s) 169, 370, 582
FatI CATG 3 cut(s) 165, 366, 578
FauNDI CATATG 1 cut(s) 391
Fnu4HI GCNGC 6 cut(s) 63, 66, 192, 237, 567, 643
FokI GGATG 2 cut(s) 534, 672
Fsp4HI GCNGC 6 cut(s) 63, 66, 192, 237, 567, 643
GluI GCNGC 6 cut(s) 63, 66, 192, 237, 567, 643
GsuI CTGGAG 1 cut(s) 294
HaeIII GGCC 4 cut(s) 90, 337, 600, 667
HapII CCGG 4 cut(s) 104, 195, 371, 614
HgaI GACGC 1 cut(s) 457
Hin1II CATG 3 cut(s) 169, 370, 582
HincII GTYRAC 1 cut(s) 482
HindII GTYRAC 1 cut(s) 482
HinfI GANTC 2 cut(s) 200, 701
HpaII CCGG 4 cut(s) 104, 195, 371, 614
HphI GGTGA 2 cut(s) 421, 536
Hpy166II GTNNAC 2 cut(s) 482, 584
Hpy188I TCNGA 4 cut(s) 280, 561, 621, 700
Hpy188III TCNNGA 2 cut(s) 13, 467
Hpy8I GTNNAC 2 cut(s) 482, 584
Hpy99I CGWCG 1 cut(s) 42
HpyAV CCTTC 1 cut(s) 63
HpyCH4IV ACGT 1 cut(s) 40
HpyF10VI GCNNNNNNNGC 1 cut(s) 648
HpyF3I CTNAG 1 cut(s) 587
HpySE526I ACGT 1 cut(s) 40
Hsp92II CATG 3 cut(s) 169, 370, 582
KpnI GGTACC 1 cut(s) 53
KroI GCCGGC 1 cut(s) 370
KroNI GCCGGC 1 cut(s) 372
Kzo9I GATC 1 cut(s) 181
LmnI GCTCC 1 cut(s) 313
Lsp1109I GCAGC 5 cut(s) 49, 77, 178, 223, 578
LweI GCATC 1 cut(s) 248
MabI ACCWGGT 1 cut(s) 475
MaeII ACGT 1 cut(s) 40
MaeIII GTNAC 2 cut(s) 409, 590
MalI GATC 1 cut(s) 183
MboI GATC 1 cut(s) 181
MboII GAAGA 2 cut(s) 245, 470
MhlI GDGCHC 1 cut(s) 586
MluCI AATT 6 cut(s) 74, 96, 259, 274, 461, 532
MnlI CCTC 4 cut(s) 354, 393, 586, 611
MroNI GCCGGC 1 cut(s) 370
MroXI GAANNNNTTC 1 cut(s) 462
MseI TTAA 5 cut(s) 78, 171, 273, 522, 608
MspA1I CMGCKG 2 cut(s) 68, 191
MspCI CTTAAG 1 cut(s) 607
MspI CCGG 4 cut(s) 104, 195, 371, 614
MspR9I CCNGG 4 cut(s) 33, 105, 477, 615
MvaI CCWGG 2 cut(s) 33, 477
MwoI GCNNNNNNNGC 1 cut(s) 648
NaeI GCCGGC 1 cut(s) 372
NciI CCSGG 2 cut(s) 105, 615
NdeI CATATG 1 cut(s) 391
NdeII GATC 1 cut(s) 181
NgoMIV GCCGGC 1 cut(s) 370
NlaIII CATG 3 cut(s) 169, 370, 582
NlaIV GGNNCC 4 cut(s) 51, 309, 375, 599
NmuCI GTSAC 2 cut(s) 409, 590
NspI RCATGY 2 cut(s) 169, 370
PaeI GCATGC 1 cut(s) 370
PaqCI CACCTGC 1 cut(s) 385
PceI AGGCCT 1 cut(s) 337
PdiI GCCGGC 1 cut(s) 372
PdmI GAANNNNTTC 1 cut(s) 462
PfeI GAWTC 2 cut(s) 200, 701
PflFI GACNNNGTC 2 cut(s) 477, 615
PkrI GCNGC 6 cut(s) 64, 67, 193, 238, 568, 644
PshBI ATTAAT 1 cut(s) 273
Psp6I CCWGG 2 cut(s) 31, 475
PspEI GGTNACC 1 cut(s) 409
PspGI CCWGG 2 cut(s) 31, 475
PspN4I GGNNCC 4 cut(s) 51, 309, 375, 599
PspPI GGNCC 3 cut(s) 88, 598, 665
PstI CTGCAG 2 cut(s) 67, 568
PsyI GACNNNGTC 2 cut(s) 477, 615
PvuII CAGCTG 2 cut(s) 68, 191
RsaI GTAC 3 cut(s) 51, 152, 638
RsaNI GTAC 3 cut(s) 50, 151, 637
SaqAI TTAA 5 cut(s) 78, 171, 273, 522, 608
SatI GCNGC 6 cut(s) 63, 66, 192, 237, 567, 643
Sau3AI GATC 1 cut(s) 181
Sau96I GGNCC 3 cut(s) 88, 598, 665
ScrFI CCNGG 4 cut(s) 33, 105, 477, 615
SduI GDGCHC 1 cut(s) 586
SexAI ACCWGGT 1 cut(s) 475
SfaNI GCATC 1 cut(s) 248
SfcI CTRYAG 5 cut(s) 57, 63, 186, 285, 564
SmlI CTYRAG 2 cut(s) 264, 607
SmoI CTYRAG 2 cut(s) 264, 607
SphI GCATGC 1 cut(s) 370
Sse9I AATT 6 cut(s) 74, 96, 259, 274, 461, 532
SseBI AGGCCT 1 cut(s) 337
SsiI CCGC 3 cut(s) 209, 429, 643
StuI AGGCCT 1 cut(s) 337
StyD4I CCNGG 4 cut(s) 31, 103, 475, 613
TaiI ACGT 1 cut(s) 43
TaqII GACCGA 1 cut(s) 428
TasI AATT 6 cut(s) 74, 96, 259, 274, 461, 532
TatI WGTACW 1 cut(s) 636
TauI GCSGC 1 cut(s) 645
TfiI GAWTC 2 cut(s) 200, 701
Tru1I TTAA 5 cut(s) 78, 171, 273, 522, 608
Tru9I TTAA 5 cut(s) 78, 171, 273, 522, 608
TscAI CASTG 1 cut(s) 595
TseFI GTSAC 2 cut(s) 409, 590
TseI GCWGC 5 cut(s) 62, 65, 191, 236, 566
Tsp45I GTSAC 2 cut(s) 409, 590
TspDTI ATGAA 2 cut(s) 347, 413
TspGWI ACGGA 1 cut(s) 678
TspRI CASTG 1 cut(s) 595
Tth111I GACNNNGTC 2 cut(s) 477, 615
Vha464I CTTAAG 1 cut(s) 607
VneI GTGCAC 1 cut(s) 582
VspI ATTAAT 1 cut(s) 273
XapI RAATTY 3 cut(s) 74, 259, 461
XceI RCATGY 2 cut(s) 169, 370
XmnI GAANNNNTTC 1 cut(s) 462
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.