Prupe.5G158800_v2.0.a1

3'-UTR-mediated mRNA destabilization

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0000602
Physical Location & Seq
Reverse (-)
14068922 .. 14072401
3480 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G158800.1

Sequence Viewer

Length: 2406 bp
ATGTTGCCATCCGCACGTCTCCTACTACCAGCAGCAGCAGCGGCAGCCCCAGTGCTTTACAGATTTTATAAGTATTTGAGAGCTGAAGTCATCAGGGTTCCCCAAAACCCTCCGGAACTGTCTGATCTTGATCTTGCCATCCTTGAAGAGATTCGGAAACTCGGCCCCGCCCTCCTTGATAAGATTCTCAAGGACCCCGCCCTCCTTGATGAGTTTCGGAAAATCGACCCCGCCGTCCTCCATGAGTTTCGGAAACTCGATCCTGCCATCATTGGCAAGATACTTCAATCCTGTTTGAAAGACAACAAGGAAGGTGAAGAAGAGGCGGACAGGAGTACTTGTAGTGGGCGCGAAACTGCAAAACAAAACGAAAATGGAAACGAAGAGACGGAAGGAGGAGGAGGAGAAAATAAGAATGAGAATGGGGGTGAGGTGGAGAAGAAGGTTGTTGATGAAGAAAGAAGCAGAAGCCAGCATTACCCAGTGAGGCCTGGAGCTGGAGAAGGAAAAACAGCAAGGAAAAACAGAAAAAACAATCAGGTGTCCAAAGACAAGATGAAGGAAAGGGAAGGGTTGGCAGCAGAGAAGCCAGGCCAGACAGAATGCAAGGATTATTCCAGGTCAGGAGGACGTAAATATGAAAAAGCTTGTAGTTTAAATCCCGGAAGAGGGGAACCTTCTGTAGCTCCAATTCTAGAATGTAACTTTCTGGGCCTGCCAATTCGGCCGGGGGAGAAAGACTGTTCCTTCTATATGCGAAATGCCTCCTGCATGTTTGGTACAAACTGCAGGTTTAATCACCCTGATCCCACAGCAGCAAGAGAATCTGAACCCCCATCTGGATATGGTAATGGCAGATCTCCAGCATTACAAGGTGCATCGTCATCAACAGCAGCACCATGGTCTGCACCAAGATCATTGAATGATGTTCCGCTTTATGTGCCAATGGTGAGTCCGCATGTTCAGATAGGAAGCTGGGGTAATGCAGATGGGGTTTGGGCCCAATCGGAGTTAGGAAACAAAGATGAAGCAAGTGGCTGGACAAAACCTGCTTTTATTAATGAGAATCAGAATGACAGTTGGAATAAACCAAGTGGTGTAGATGACAATAAAAGAGCTTCCTGGGGTAAAGCAGATGGAGGTTCTACTTGGACTAAACAAGATGGAGATCCTACATGGAATAAACAAGGTGAAGGTTCTACTTGGAATAAACAAGATGGCAGTTCTGCTTGGAATAAACCAGCAGGAGATTCTTATTGGAGTAAACAAGCTGGATGGTCTTCATGGGGTAAACAAGCTGATGTAACAGCAGGACATGAGTCTGGCAGAGTGGGGAATCAAGATAATGGTTGGAAGAGGGCAAGTTCTTTTGGTGGCAGTCAATCAATAGATGGTGTGAATGGAGACCAACCTGAGGATTTCAATAATAATCGAAGTGGTGGGAATTGGAGAGGTGGTTCAGGTAGAGGAAATTCAGACAGAGGAGGTTTTAGAGGTGGACGGGGTTTTGTAGGTAGAGGTGGTGATAGAGAGGAGGATAGAGGGGGTTTTGGACGTAGATGGGGTTTTGGTGGTAGAGGTGGAGACAGAGGGAGCTTTGGTGGTAGAGGTAGATCAGACAAAGGAGGGTTTGGTGGTAGAGGCTATGGAGGAAGAGGCCGTGGGAGGTATCAAAGTGGTGGTTGCAGCAATAGAAATGAATCTATTGATAATAACTCATCAGGCTGGAGCAAAGGGGCAGACGGTGCTGGCGAGGGATGGAGAAGGGACAAAGGCGGAGGAAGTTGGAACCATGGCAGTAAGAACGATTGGCAGGGTAGGAACTCTAGCGGATGGAGTAACCAGAGCTCCGGTTGGAACCAGTCTGATGTGACTAAAGAAATTGGTGGTTCGGGATCAGGTTGGAATCAGACAGTGGAGGCTAAATATACTGCTGGCACTCAGGACAAGGGAACAGGTTCTCATAATGAAGTGGGCACAAGCTGGGGAAACAATTGGAAATCATCAGATGCTTCTAATGGGGACCAATCGTCTAGGTGGAAACAATCGACTGCAGCCAAAGAATTCAAAGGAAACACTGATCAAGACGGCGGCTGGAACAAGGGACCGAGCTCAAACGCACAAGCTGGGGGCTGGGGCAACCAGGGTTCAGGTTGGAACAAAGGAACAGGTTCAGGATTTGGAGGCGGTACCGGAGAGCAACCAAGTGCTGCTGTTGGAGGTCAATCATCTGACTGGAAGCAATCAAGTGCTGCAAGCAGGGGTCAATCCTCTAGTTGGAATCAATCTGGTGAGGCACAAGGAACTGATGAAGGTGCAAAACCGACTAATTCATGGGGCAAAGCAGCAGTAGCAAGCTCTTGGGGCAAGTGTTCTGATGGTGAAAGTAGCAAAGGAGGGTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04218 map04218
Pfam Domains
Protein Families
zf-CCCH

Protein Analysis

802

Amino Acids

85.29

Weight (kDa)

8.74

Isoelectric Point (pI)

51.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000602)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G48195 AT3G48440 AT5G63260 AT5G63260
fragaria_vesca FvH4_5g07100 FvH4_5g07100 FvH4_5g07100 FvH4_5g07100 FvH4_5g07100 FvH4_5g07100 FvH4_5g07100
malus_domestica MD06G1158800.v1.1 MD06G1159000.v1.1 MD06G1159200.v1.1 MD14G1165100.v1.1 MD14G1165300.v1.1 MD14G1165400.v1.1 MD14G1165500.v1.1
prunus_persica Prupe.5G158300_v2.0.a1 Prupe.5G158300_v2.0.a1 Prupe.5G158400_v2.0.a1 Prupe.5G158400_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158500_v2.0.a1 Prupe.5G158600_v2.0.a1 Prupe.5G158700_v2.0.a1 Prupe.5G158800_v2.0.a1 Prupe.5G158900_v2.0.a1 Prupe.5G159000_v2.0.a1 Prupe.5G159100_v2.0.a1 Prupe.5G159100_v2.0.a1
pyrus_communis pycom02g00910 pycom06g14200 pycom14g13760 pycom14g13790 pycom14g13800
rosa_chinensis RchiOBHm_Chr5g0019351 RchiOBHm_Chr5g0022771 RchiOBHm_Chr7g0191441 RchiOBHm_Chr7g0191531
rosa_laevigata RLG00000004449 RLG00000032440
rosa_multiflora Rmu_sc0001809.1_g000062 Rmu_sc0005292.1_g000027
rosa_roxburghii Rroxscaffold_1G00074260 Rroxscaffold_6G00390280 Rroxscaffold_7G00168660
rosa_rugosa Rorug05G0049600 Rorug05G0049700 Rorug05G0049800 Rorug06G0510400
rosa_samantha Rh5CG151400 Rh5DG140300 Rh7AG118400 Rh7BG120400 Rh7CG123200 Rh7DG121300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 69
AasI GACNNNNNNGTC 1 cut(s) 233
Acc36I ACCTGC 2 cut(s) 780, 1057
Acc65I GGTACC 1 cut(s) 2189
AccB1I GGYRCC 1 cut(s) 2189
AccII CGCG 1 cut(s) 351
AccIII TCCGGA 1 cut(s) 112
AclWI GGATC 4 cut(s) 254, 800, 1163, 1903
AcoI YGGCCR 1 cut(s) 725
AcsI RAATTY 2 cut(s) 1471, 2063
AcuI CTGAAG 1 cut(s) 105
AfaI GTAC 3 cut(s) 337, 781, 2191
AfiI CCNNNNNNNGG 6 cut(s) 497, 668, 669, 839, 1414, 2277
AgsI TTSAA 6 cut(s) 146, 287, 298, 922, 1423, 2068
AhdI GACNNNNNGTC 1 cut(s) 2029
AjiI CACGTC 1 cut(s) 17
AjnI CCWGG 5 cut(s) 490, 589, 617, 1121, 2142
AloI GAACNNNNNNTCC 2 cut(s) 1441, 1473
Alw21I GWGCWC 2 cut(s) 1850, 2114
Alw26I GTCTC 4 cut(s) 23, 380, 1398, 1578
AlwI GGATC 4 cut(s) 254, 800, 1163, 1903
Aor13HI TCCGGA 1 cut(s) 112
AoxI GGCC 7 cut(s) 163, 488, 592, 712, 725, 999, 1657
ApaI GGGCCC 1 cut(s) 1003
ApoI RAATTY 2 cut(s) 1471, 2063
AseI ATTAAT 1 cut(s) 1059
Asp700I GAANNNNTTC 3 cut(s) 150, 1957, 2170
Asp718I GGTACC 1 cut(s) 2189
AspLEI GCGC 1 cut(s) 351
AspS9I GGNCC 7 cut(s) 164, 193, 712, 999, 1000, 2023, 2105
AsuC2I CCSGG 2 cut(s) 663, 729
AsuHPI GGTGA 8 cut(s) 326, 440, 791, 961, 1202, 1535, 2303, 2393
AvaII GGWCC 3 cut(s) 193, 2023, 2105
AxyI CCTNAGG 1 cut(s) 1413
BaeGI GKGCMC 2 cut(s) 1003, 1979
BanI GGYRCC 1 cut(s) 2189
BanII GRGCYC 3 cut(s) 1003, 1850, 2114
BbsI GAAGAC 1 cut(s) 1272
Bbv12I GWGCWC 2 cut(s) 1850, 2114
BceAI ACGGC 3 cut(s) 218, 1644, 2104
BciT130I CCWGG 5 cut(s) 492, 591, 619, 1123, 2144
BclI TGATCA 1 cut(s) 2080
BcnI CCSGG 2 cut(s) 663, 729
BcoDI GTCTC 4 cut(s) 23, 380, 1398, 1578
BfaI CTAG 4 cut(s) 695, 1827, 2034, 2274
BfmI CTRYAG 3 cut(s) 681, 787, 2052
BfuAI ACCTGC 2 cut(s) 780, 1057
BglI GCCNNNNNGGC 1 cut(s) 724
BglII AGATCT 1 cut(s) 857
BmcAI AGTACT 1 cut(s) 337
Bme1390I CCNGG 7 cut(s) 492, 591, 619, 663, 729, 1123, 2144
Bme18I GGWCC 3 cut(s) 193, 2023, 2105
BmeRI GACNNNNNGTC 1 cut(s) 2029
BmgBI CACGTC 1 cut(s) 17
BmgT120I GGNCC 7 cut(s) 164, 193, 712, 999, 1000, 2023, 2105
BmrFI CCNGG 7 cut(s) 492, 591, 619, 663, 729, 1123, 2144
BmrI ACTGGG 2 cut(s) 44, 476
BmsI GCATC 2 cut(s) 887, 1999
BmuI ACTGGG 2 cut(s) 44, 476
BoxI GACNNNNGTC 1 cut(s) 1318
BpiI GAAGAC 1 cut(s) 1272
BpmI CTGGAG 4 cut(s) 513, 519, 846, 1747
BpuEI CTTGAG 1 cut(s) 173
BpuMI CCSGG 2 cut(s) 663, 729
BsaBI GATNNNNATC 2 cut(s) 129, 1167
BsaI GGTCTC 1 cut(s) 1398
BsaJI CCNNGG 6 cut(s) 728, 899, 1122, 1660, 1792, 2143
BsaWI WCCGGW 3 cut(s) 112, 1850, 2192
BsaXI ACNNNNNCTCC 8 cut(s) 325, 355, 1441, 1471, 1585, 1615, 1832, 1862
Bsc4I CCNNNNNNNGG 6 cut(s) 497, 668, 669, 839, 1414, 2277
Bse1I ACTGG 4 cut(s) 50, 482, 1861, 2240
Bse21I CCTNAGG 1 cut(s) 1413
Bse8I GATNNNNATC 2 cut(s) 129, 1167
BseAI TCCGGA 1 cut(s) 112
BseBI CCWGG 5 cut(s) 492, 591, 619, 1123, 2144
BseDI CCNNGG 6 cut(s) 728, 899, 1122, 1660, 1792, 2143
BseGI GGATG 5 cut(s) 8, 138, 1280, 1763, 1838
BseJI GATNNNNATC 2 cut(s) 129, 1167
BseLI CCNNNNNNNGG 6 cut(s) 497, 668, 669, 839, 1414, 2277
BseMII CTCAG 2 cut(s) 1404, 1955
BseNI ACTGG 4 cut(s) 50, 482, 1861, 2240
BseRI GAGGAG 5 cut(s) 411, 414, 417, 1497, 1547
BseSI GKGCMC 2 cut(s) 1003, 1979
BseX3I CGGCCG 1 cut(s) 725
BseYI CCCAGC 4 cut(s) 975, 1983, 2126, 2133
BsgI GTGCAG 1 cut(s) 891
Bsh1236I CGCG 1 cut(s) 351
Bsh1285I CGRYCG 1 cut(s) 728
BshFI GGCC 7 cut(s) 165, 490, 594, 714, 727, 1001, 1659
BshNI GGYRCC 1 cut(s) 2189
BsiEI CGRYCG 1 cut(s) 728
BsiHKAI GWGCWC 2 cut(s) 1850, 2114
BsiSI CCGG 5 cut(s) 113, 663, 728, 1851, 2193
BslFI GGGAC 3 cut(s) 1781, 2036, 2118
BslI CCNNNNNNNGG 6 cut(s) 497, 668, 669, 839, 1414, 2277
BsmAI GTCTC 4 cut(s) 23, 380, 1398, 1578
BsmBI CGTCTC 2 cut(s) 23, 380
BsmFI GGGAC 3 cut(s) 1781, 2036, 2118
BsmI GAATGC 1 cut(s) 608
BsnI GGCC 7 cut(s) 165, 490, 594, 714, 727, 1001, 1659
Bso31I GGTCTC 1 cut(s) 1398
Bsp120I GGGCCC 1 cut(s) 999
Bsp1286I GDGCHC 4 cut(s) 1003, 1850, 1979, 2114
Bsp13I TCCGGA 1 cut(s) 112
Bsp19I CCATGG 2 cut(s) 899, 1792
BspANI GGCC 7 cut(s) 165, 490, 594, 714, 727, 1001, 1659
BspCNI CTCAG 2 cut(s) 1405, 1954
BspEI TCCGGA 1 cut(s) 112
BspFNI CGCG 1 cut(s) 351
BspMAI CTGCAG 2 cut(s) 791, 2056
BspMI ACCTGC 2 cut(s) 780, 1057
BspPI GGATC 4 cut(s) 254, 800, 1163, 1903
BspT107I GGYRCC 1 cut(s) 2189
BspTNI GGTCTC 1 cut(s) 1398
BsrI ACTGG 4 cut(s) 50, 482, 1861, 2240
BssECI CCNNGG 6 cut(s) 728, 899, 1122, 1660, 1792, 2143
BssT1I CCWWGG 2 cut(s) 899, 1792
Bst2UI CCWGG 5 cut(s) 492, 591, 619, 1123, 2144
Bst4CI ACNGT 5 cut(s) 120, 743, 1079, 1745, 1915
Bst6I CTCTTC 6 cut(s) 141, 315, 378, 661, 1349, 1648
BstAPI GCANNNNNTGC 1 cut(s) 1745
BstC8I GCNNGC 6 cut(s) 473, 716, 1750, 1936, 2257, 2356
BstDEI CTNAG 2 cut(s) 1413, 1941
BstDSI CCRYGG 3 cut(s) 899, 1660, 1792
BstF5I GGATG 5 cut(s) 8, 138, 1280, 1763, 1838
BstFNI CGCG 1 cut(s) 351
BstHHI GCGC 1 cut(s) 351
BstMAI GTCTC 4 cut(s) 23, 380, 1398, 1578
BstMCI CGRYCG 1 cut(s) 728
BstMWI GCNNNNNNNGC 8 cut(s) 38, 41, 44, 724, 940, 1745, 2351, 2364
BstNI CCWGG 5 cut(s) 492, 591, 619, 1123, 2144
BstNSI RCATGY 2 cut(s) 775, 962
BstPAI GACNNNNGTC 1 cut(s) 1318
BstSCI CCNGG 7 cut(s) 490, 589, 617, 661, 727, 1121, 2142
BstSFI CTRYAG 3 cut(s) 681, 787, 2052
BstSLI GKGCMC 2 cut(s) 1003, 1979
BstUI CGCG 1 cut(s) 351
BstV2I GAAGAC 1 cut(s) 1272
BstX2I RGATCY 2 cut(s) 857, 1168
BstYI RGATCY 2 cut(s) 857, 1168
BstZI CGGCCG 1 cut(s) 725
Bsu36I CCTNAGG 1 cut(s) 1413
BsuRI GGCC 7 cut(s) 165, 490, 594, 714, 727, 1001, 1659
BtgI CCRYGG 3 cut(s) 899, 1660, 1792
BtrI CACGTC 1 cut(s) 17
BtsCI GGATG 5 cut(s) 8, 138, 1280, 1763, 1838
BtsIMutI CAGTG 4 cut(s) 57, 489, 1920, 2076
BveI ACCTGC 2 cut(s) 780, 1057
Cac8I GCNNGC 6 cut(s) 473, 716, 1750, 1936, 2257, 2356
CfoI GCGC 1 cut(s) 351
Cfr13I GGNCC 7 cut(s) 164, 193, 712, 999, 1000, 2023, 2105
Csp6I GTAC 3 cut(s) 336, 780, 2190
CviAII CATG 9 cut(s) 242, 772, 900, 959, 1176, 1284, 1316, 1793, 2334
CviQI GTAC 3 cut(s) 336, 780, 2190
DdeI CTNAG 2 cut(s) 1413, 1941
DraI TTTAAA 1 cut(s) 657
DrdI GACNNNNNNGTC 1 cut(s) 233
DriI GACNNNNNGTC 1 cut(s) 2029
DseDI GACNNNNNNGTC 1 cut(s) 233
EaeI YGGCCR 1 cut(s) 725
EagI CGGCCG 1 cut(s) 725
Eam1104I CTCTTC 6 cut(s) 141, 315, 378, 661, 1349, 1648
Eam1105I GACNNNNNGTC 1 cut(s) 2029
EarI CTCTTC 6 cut(s) 141, 315, 378, 661, 1349, 1648
EciI GGCGGA 2 cut(s) 341, 1791
Ecl136II GAGCTC 2 cut(s) 1848, 2112
EclXI CGGCCG 1 cut(s) 725
Eco130I CCWWGG 2 cut(s) 899, 1792
Eco147I AGGCCT 1 cut(s) 490
Eco24I GRGCYC 3 cut(s) 1003, 1850, 2114
Eco31I GGTCTC 1 cut(s) 1398
Eco47I GGWCC 3 cut(s) 193, 2023, 2105
Eco52I CGGCCG 1 cut(s) 725
Eco53kI GAGCTC 2 cut(s) 1848, 2112
Eco57I CTGAAG 1 cut(s) 105
Eco81I CCTNAGG 1 cut(s) 1413
EcoICRI GAGCTC 2 cut(s) 1848, 2112
EcoO109I RGGNCCY 1 cut(s) 193
EcoRI GAATTC 1 cut(s) 2063
EcoRII CCWGG 5 cut(s) 490, 589, 617, 1121, 2142
EcoT14I CCWWGG 2 cut(s) 899, 1792
EcoT38I GRGCYC 3 cut(s) 1003, 1850, 2114
ErhI CCWWGG 2 cut(s) 899, 1792
Esp3I CGTCTC 2 cut(s) 23, 380
FaeI CATG 9 cut(s) 245, 775, 903, 962, 1179, 1287, 1319, 1796, 2337
FaqI GGGAC 3 cut(s) 1781, 2036, 2118
FatI CATG 9 cut(s) 241, 771, 899, 958, 1175, 1283, 1315, 1792, 2333
FauI CCCGC 3 cut(s) 175, 205, 238
FbaI TGATCA 1 cut(s) 2080
FokI GGATG 4 cut(s) 125, 1287, 1770, 1845
FriOI GRGCYC 3 cut(s) 1003, 1850, 2114
FspBI CTAG 4 cut(s) 695, 1827, 2034, 2274
GlaI GCGC 1 cut(s) 350
GsaI CCCAGC 4 cut(s) 979, 1987, 2130, 2137
GsuI CTGGAG 4 cut(s) 513, 519, 846, 1747
HaeIII GGCC 7 cut(s) 165, 490, 594, 714, 727, 1001, 1659
HapII CCGG 5 cut(s) 113, 663, 728, 1851, 2193
HhaI GCGC 1 cut(s) 351
Hin1II CATG 9 cut(s) 245, 775, 903, 962, 1179, 1287, 1319, 1796, 2337
Hin6I GCGC 1 cut(s) 349
HinP1I GCGC 1 cut(s) 349
HindIII AAGCTT 1 cut(s) 645
HpaII CCGG 5 cut(s) 113, 663, 728, 1851, 2193
HphI GGTGA 8 cut(s) 326, 440, 791, 961, 1202, 1535, 2303, 2393
Hpy166II GTNNAC 3 cut(s) 1265, 1292, 1499
Hpy8I GTNNAC 3 cut(s) 1265, 1292, 1499
HpyCH4III ACNGT 5 cut(s) 120, 743, 1079, 1745, 1915
HpyCH4IV ACGT 3 cut(s) 16, 631, 1555
HpyF10VI GCNNNNNNNGC 8 cut(s) 38, 41, 44, 724, 940, 1745, 2351, 2364
HpyF3I CTNAG 2 cut(s) 1413, 1941
HpySE526I ACGT 3 cut(s) 16, 631, 1555
Hsp92II CATG 9 cut(s) 245, 775, 903, 962, 1179, 1287, 1319, 1796, 2337
HspAI GCGC 1 cut(s) 349
Kpn2I TCCGGA 1 cut(s) 112
KpnI GGTACC 1 cut(s) 2193
Ksp22I TGATCA 1 cut(s) 2080
LmnI GCTCC 5 cut(s) 494, 691, 1593, 1728, 1853
LweI GCATC 2 cut(s) 887, 1999
MaeI CTAG 4 cut(s) 695, 1827, 2034, 2274
MaeII ACGT 3 cut(s) 16, 631, 1555
MaeIII GTNAC 4 cut(s) 701, 1303, 1838, 1870
MfeI CAATTG 1 cut(s) 1993
MflI RGATCY 2 cut(s) 857, 1168
MhlI GDGCHC 4 cut(s) 1003, 1850, 1979, 2114
MluCI AATT 8 cut(s) 690, 720, 1444, 1471, 1881, 1993, 2063, 2329
MlyI GAGTC 2 cut(s) 961, 1328
MmeI TCCRAC 8 cut(s) 1061, 1331, 1766, 1835, 1883, 2135, 2197, 2258
MroI TCCGGA 1 cut(s) 112
MroXI GAANNNNTTC 3 cut(s) 150, 1957, 2170
MseI TTAA 3 cut(s) 656, 795, 1059
MspA1I CMGCKG 1 cut(s) 41
MspI CCGG 5 cut(s) 113, 663, 728, 1851, 2193
MspR9I CCNGG 7 cut(s) 492, 591, 619, 663, 729, 1123, 2144
MunI CAATTG 1 cut(s) 1993
Mva1269I GAATGC 1 cut(s) 608
MvaI CCWGG 5 cut(s) 492, 591, 619, 1123, 2144
MvnI CGCG 1 cut(s) 351
MwoI GCNNNNNNNGC 8 cut(s) 38, 41, 44, 724, 940, 1745, 2351, 2364
NciI CCSGG 2 cut(s) 663, 729
NcoI CCATGG 2 cut(s) 899, 1792
NlaIII CATG 9 cut(s) 245, 775, 903, 962, 1179, 1287, 1319, 1796, 2337
NmeAIII GCCGAG 1 cut(s) 141
NmuCI GTSAC 1 cut(s) 1870
NspI RCATGY 2 cut(s) 775, 962
PceI AGGCCT 1 cut(s) 490
PcsI WCGNNNNNNNCGW 2 cut(s) 231, 1749
PctI GAATGC 1 cut(s) 608
PdmI GAANNNNTTC 3 cut(s) 150, 1957, 2170
PfeI GAWTC 9 cut(s) 151, 184, 824, 1066, 1250, 1336, 1700, 1906, 2281
PfoI TCCNGGA 1 cut(s) 661
PleI GAGTC 2 cut(s) 960, 1327
PpsI GAGTC 2 cut(s) 960, 1327
PpuMI RGGWCCY 1 cut(s) 193
PshAI GACNNNNGTC 1 cut(s) 1318
PshBI ATTAAT 1 cut(s) 1059
PsiI TTATAA 1 cut(s) 69
Psp124BI GAGCTC 2 cut(s) 1850, 2114
Psp5II RGGWCCY 1 cut(s) 193
Psp6I CCWGG 5 cut(s) 490, 589, 617, 1121, 2142
PspFI CCCAGC 4 cut(s) 975, 1983, 2126, 2133
PspGI CCWGG 5 cut(s) 490, 589, 617, 1121, 2142
PspOMI GGGCCC 1 cut(s) 999
PspPI GGNCC 7 cut(s) 164, 193, 712, 999, 1000, 2023, 2105
PspPPI RGGWCCY 1 cut(s) 193
PstI CTGCAG 2 cut(s) 791, 2056
PsuI RGATCY 2 cut(s) 857, 1168
RsaI GTAC 3 cut(s) 337, 781, 2191
RsaNI GTAC 3 cut(s) 336, 780, 2190
SacI GAGCTC 2 cut(s) 1850, 2114
SaqAI TTAA 3 cut(s) 656, 795, 1059
Sau96I GGNCC 7 cut(s) 164, 193, 712, 999, 1000, 2023, 2105
ScaI AGTACT 1 cut(s) 337
SchI GAGTC 2 cut(s) 961, 1328
ScrFI CCNGG 7 cut(s) 492, 591, 619, 663, 729, 1123, 2144
SduI GDGCHC 4 cut(s) 1003, 1850, 1979, 2114
SfaNI GCATC 2 cut(s) 887, 1999
SfcI CTRYAG 3 cut(s) 681, 787, 2052
SinI GGWCC 3 cut(s) 193, 2023, 2105
SmlI CTYRAG 1 cut(s) 188
SmoI CTYRAG 1 cut(s) 188
Sse9I AATT 8 cut(s) 690, 720, 1444, 1471, 1881, 1993, 2063, 2329
SseBI AGGCCT 1 cut(s) 490
SspMI CTAG 4 cut(s) 695, 1827, 2034, 2274
SstI GAGCTC 2 cut(s) 1850, 2114
StuI AGGCCT 1 cut(s) 490
StyD4I CCNGG 7 cut(s) 490, 589, 617, 661, 727, 1121, 2142
StyI CCWWGG 2 cut(s) 899, 1792
TaaI ACNGT 5 cut(s) 120, 743, 1079, 1745, 1915
TaiI ACGT 3 cut(s) 19, 634, 1558
TaqI TCGA 4 cut(s) 225, 258, 1432, 2048
TaqII GACCGA 1 cut(s) 2122
TasI AATT 8 cut(s) 690, 720, 1444, 1471, 1881, 1993, 2063, 2329
TatI WGTACW 1 cut(s) 335
TauI GCSGC 2 cut(s) 44, 2094
TfiI GAWTC 9 cut(s) 151, 184, 824, 1066, 1250, 1336, 1700, 1906, 2281
Tru1I TTAA 3 cut(s) 656, 795, 1059
Tru9I TTAA 3 cut(s) 656, 795, 1059
TscAI CASTG 4 cut(s) 57, 489, 1920, 2083
TseFI GTSAC 1 cut(s) 1870
Tsp45I GTSAC 1 cut(s) 1870
TspDTI ATGAA 9 cut(s) 468, 572, 654, 1041, 1272, 1713, 1983, 2322, 2325
TspGWI ACGGA 1 cut(s) 404
TspRI CASTG 4 cut(s) 57, 489, 1920, 2083
VpaK11BI GGWCC 3 cut(s) 193, 2023, 2105
VspI ATTAAT 1 cut(s) 1059
XapI RAATTY 2 cut(s) 1471, 2063
XbaI TCTAGA 1 cut(s) 694
XceI RCATGY 2 cut(s) 775, 962
XmnI GAANNNNTTC 3 cut(s) 150, 1957, 2170
XspI CTAG 4 cut(s) 695, 1827, 2034, 2274
ZrmI AGTACT 1 cut(s) 337
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.