AT2G38100

Protein NRT1 PTR FAMILY

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0001179
Physical Location & Seq
Reverse (-)
15948418 .. 15950994
2577 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G38100.3

Sequence Viewer

Length: 1566 bp
ATGTCAGTTCTGTCATGGGCTTTTACCGTTGCGTGGTTTACCCTCTGGATGTTGATGCTATACTTGACGAACGAGATGAAGCTAAAGTTCACAGACGCAGCTGCGATTGTAAATGTGTTTGCTGGTGTATCAGCTATTGGTCATCTTGGCATGCAATTTCTTGTTGATGCATTTATTGGTCACTTTTGGATGCTCTGTCTCTCTACTTTAGCATTCAGTTTCGGTTTCGGGTTCTTGGCAATATCAGCGTCACCAATACTTTCAGGCAATGGACAAAAGGGCCTGTTCTACGTAGCGCTAACGGTTATATCCGTTGGTATATTTGGACGGTCTATCTCTTTGGGAGTATTTACAGAAGACCAACTAGAAGACGGTAGGAACAAGGGAAACCCCGCCAAGCTCGTTAGCTTTGTCATTGGAAATGTGGGGAATTTTGTGTTCTTGTTACTTGCTGCTATTGCAATGCCTCAGATAAGTCCGTGGTTTGTTAGGTTCACGATCCCCTCGGGCTGTGAGGTATTAGCAATGCTGATTTTTATTTCCGGTGCGTGTTCATACAAACGGGTTAAACCAGGTGGGAGCCCTTTGACAACGGTTTTCCGGGTCTTTATGGCTTCTGCTTCCAAAATGTCTTGTGCATACTCGAACAACTCAAGCCAGCTCTATGAAAAAGCTGAGTGTGATCAAGATATTAAGCCCCACACAAGCAGCTTAAGGTATCTAGATAGAGCTGCAATGATACTCCAAACAGAGTCTTTGGAACAACAGAGGAAAAACAGATGGAAGCTTTGTCGGGTGACAGAAGTGGAGCAAACGAAAAGCGTCATACGCACGGTTCCTTTGTTTGCGACATCTCTCATTTCGGGGATTGTCTTCTCTCTTGGTAATACTTTCTTCCTTGAACAAGCAAACCATATGGACTCCAAGTTCGGATCATGGAACCTTCCTCTCCCACTCCTCTTACTCTTTAGTGAAGCTGCAAGGCTAGGATCCCGAGAACTATGTGTCATGGCTGCAAAACGCCATGCCATTGACTTCCCTGAATCACCTAAACAAACCAAAACGCCTTATGGTATACCAGTCTCCATCATCCTATCGATATTTTGCTGCTCCATCGCTGCACATGTTGAGTCTAGGAGGCTCAAAGTAGTTAGTACTCAAGGTTTACTACATGAAACTGTCCCCATGAGTGTATTCTGGCTGCTCCCACAGTACATTCTACTCGGTTCAATCACAGGAATCTACGAAAACAGCTTTGCGCTTTACCTAGAAGAAACGGTGCCTGAAGAGTTGAGCCAATACATGGTTCTATTAAACGTGGGAGTGTGCGGGGTCGGGATCATGAGCAACATTGCTCTTGTTAGTTTGGTGGGCAGTGTAAGCGGAGGCAAATGGTTTCAAGACACAATAAACAAGAGCCGGGTGGATAACTATTATTGGGTTATAACAGTGTTTTGCATGTTCAATCTCTTGTTATATTTCATTGTAACCTATAGGTACACAGTGTGTAACAAGAAAGATGGTGCAACACAAGAAAATGATCGAAGGATAATCGCTTCTGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PTR2

Protein Analysis

521

Amino Acids

57.84

Weight (kDa)

8.72

Isoelectric Point (pI)

41.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PTR2 PF00854 68 - 416 1.1e-29 POT family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1445
AccB1I GGYRCC 1 cut(s) 1279
AccB7I CCANNNNNTGG 1 cut(s) 1303
AccI GTMKAC 1 cut(s) 1075
AciI CCGC 3 cut(s) 393, 1329, 1383
AclWI GGATC 5 cut(s) 493, 940, 984, 997, 1346
AcsI RAATTY 1 cut(s) 430
AcuI CTGAAG 1 cut(s) 1305
AdeI CACNNNGTG 1 cut(s) 1506
AfaI GTAC 3 cut(s) 1156, 1214, 1499
AfeI AGCGCT 1 cut(s) 297
AfiI CCNNNNNNNGG 2 cut(s) 33, 1303
AflII CTTAAG 1 cut(s) 712
AflIII ACRYGT 1 cut(s) 1123
AgsI TTSAA 4 cut(s) 902, 1230, 1400, 1465
AjnI CCWGG 1 cut(s) 571
AjuI GAANNNNNNNTTGG 2 cut(s) 1290, 1322
AloI GAACNNNNNNTCC 2 cut(s) 911, 943
Alw26I GTCTC 2 cut(s) 203, 1087
AlwI GGATC 5 cut(s) 493, 940, 984, 997, 1346
Ama87I CYCGRG 2 cut(s) 505, 993
Aor51HI AGCGCT 1 cut(s) 297
AoxI GGCC 1 cut(s) 280
ApoI RAATTY 1 cut(s) 430
ArsI GACNNNNNNTTYG 2 cut(s) 911, 943
AspLEI GCGC 2 cut(s) 298, 1261
AspS9I GGNCC 1 cut(s) 280
AsuC2I CCSGG 2 cut(s) 602, 1421
AsuHPI GGTGA 3 cut(s) 243, 808, 1038
AvaI CYCGRG 2 cut(s) 505, 993
BamHI GGATCC 1 cut(s) 989
BanI GGYRCC 1 cut(s) 1279
BanII GRGCYC 1 cut(s) 584
BbsI GAAGAC 3 cut(s) 363, 375, 865
BccI CCATC 4 cut(s) 774, 1094, 1121, 1514
BciT130I CCWGG 1 cut(s) 573
BclI TGATCA 1 cut(s) 682
BcnI CCSGG 2 cut(s) 602, 1421
BcoDI GTCTC 2 cut(s) 203, 1087
BfaI CTAG 5 cut(s) 365, 722, 986, 1134, 1268
BfmI CTRYAG 1 cut(s) 1492
BfoI RGCGCY 1 cut(s) 299
BfrI CTTAAG 1 cut(s) 712
BmcAI AGTACT 1 cut(s) 1156
Bme1390I CCNGG 3 cut(s) 573, 602, 1421
BmeT110I CYCGRG 2 cut(s) 505, 993
BmgT120I GGNCC 1 cut(s) 280
BmiI GGNNCC 5 cut(s) 581, 837, 941, 991, 1281
BmrFI CCNGG 3 cut(s) 573, 602, 1421
BmsI GCATC 3 cut(s) 45, 157, 180
BpiI GAAGAC 3 cut(s) 363, 375, 865
BpuEI CTTGAG 2 cut(s) 637, 1143
BpuMI CCSGG 2 cut(s) 602, 1421
Bsa29I ATCGAT 1 cut(s) 1097
BsaAI YACGTR 1 cut(s) 292
BsaJI CCNNGG 2 cut(s) 479, 504
BsaWI WCCGGW 1 cut(s) 542
Bsc4I CCNNNNNNNGG 2 cut(s) 33, 1303
Bse1I ACTGG 1 cut(s) 1079
Bse3DI GCAATG 5 cut(s) 274, 468, 531, 741, 1350
BseBI CCWGG 1 cut(s) 573
BseCI ATCGAT 1 cut(s) 1097
BseDI CCNNGG 2 cut(s) 479, 504
BseGI GGATG 3 cut(s) 54, 195, 1089
BseLI CCNNNNNNNGG 2 cut(s) 33, 1303
BseMI GCAATG 5 cut(s) 274, 468, 531, 741, 1350
BseMII CTCAG 2 cut(s) 482, 666
BseNI ACTGG 1 cut(s) 1079
BseRI GAGGAG 1 cut(s) 947
BsgI GTGCAG 1 cut(s) 1104
BshFI GGCC 1 cut(s) 282
BshNI GGYRCC 1 cut(s) 1279
BshVI ATCGAT 1 cut(s) 1097
BsiHKCI CYCGRG 2 cut(s) 505, 993
BsiSI CCGG 3 cut(s) 543, 601, 1420
BslFI GGGAC 1 cut(s) 1166
BslI CCNNNNNNNGG 2 cut(s) 33, 1303
BsmAI GTCTC 2 cut(s) 203, 1087
BsmFI GGGAC 1 cut(s) 1166
BsmI GAATGC 1 cut(s) 212
BsnI GGCC 1 cut(s) 282
BsoBI CYCGRG 2 cut(s) 505, 993
Bsp1286I GDGCHC 1 cut(s) 584
Bsp143I GATC 6 cut(s) 498, 682, 932, 989, 1338, 1540
BspACI CCGC 3 cut(s) 393, 1329, 1383
BspANI GGCC 1 cut(s) 282
BspCNI CTCAG 2 cut(s) 481, 667
BspDI ATCGAT 1 cut(s) 1097
BspHI TCATGA 1 cut(s) 1341
BspLI GGNNCC 5 cut(s) 581, 837, 941, 991, 1281
BspPI GGATC 5 cut(s) 493, 940, 984, 997, 1346
BspT107I GGYRCC 1 cut(s) 1279
BspTI CTTAAG 1 cut(s) 712
BsrDI GCAATG 5 cut(s) 274, 468, 531, 741, 1350
BsrI ACTGG 1 cut(s) 1079
BssECI CCNNGG 2 cut(s) 479, 504
BssMI GATC 6 cut(s) 498, 682, 932, 989, 1338, 1540
BssNAI GTATAC 1 cut(s) 1076
Bst1107I GTATAC 1 cut(s) 1076
Bst2UI CCWGG 1 cut(s) 573
Bst6I CTCTTC 1 cut(s) 1281
BstAFI CTTAAG 1 cut(s) 712
BstBAI YACGTR 1 cut(s) 292
BstC8I GCNNGC 2 cut(s) 152, 659
BstDEI CTNAG 2 cut(s) 468, 675
BstDSI CCRYGG 1 cut(s) 479
BstF5I GGATG 3 cut(s) 54, 195, 1089
BstH2I RGCGCY 1 cut(s) 299
BstHHI GCGC 2 cut(s) 298, 1261
BstKTI GATC 6 cut(s) 501, 685, 935, 992, 1341, 1543
BstMAI GTCTC 2 cut(s) 203, 1087
BstMBI GATC 6 cut(s) 498, 682, 932, 989, 1338, 1540
BstMWI GCNNNNNNNGC 4 cut(s) 245, 458, 828, 1380
BstNI CCWGG 1 cut(s) 573
BstNSI RCATGY 3 cut(s) 154, 1127, 1462
BstSCI CCNGG 3 cut(s) 571, 600, 1419
BstSFI CTRYAG 1 cut(s) 1492
BstSNI TACGTA 1 cut(s) 292
BstV2I GAAGAC 3 cut(s) 363, 375, 865
BstX2I RGATCY 1 cut(s) 989
BstYI RGATCY 1 cut(s) 989
BstZ17I GTATAC 1 cut(s) 1076
Bsu15I ATCGAT 1 cut(s) 1097
BsuRI GGCC 1 cut(s) 282
BsuTUI ATCGAT 1 cut(s) 1097
BtgI CCRYGG 1 cut(s) 479
BtgZI GCGATG 1 cut(s) 1099
BtsCI GGATG 3 cut(s) 54, 195, 1089
BtsI GCAGTG 1 cut(s) 1381
BtsIMutI CAGTG 3 cut(s) 1381, 1455, 1509
Cac8I GCNNGC 2 cut(s) 152, 659
CciI TCATGA 1 cut(s) 1341
CfoI GCGC 2 cut(s) 298, 1261
Cfr13I GGNCC 1 cut(s) 280
ClaI ATCGAT 1 cut(s) 1097
CseI GACGC 3 cut(s) 104, 237, 811
CsiI ACCWGGT 1 cut(s) 571
Csp6I GTAC 3 cut(s) 1155, 1213, 1498
CviQI GTAC 3 cut(s) 1155, 1213, 1498
DdeI CTNAG 2 cut(s) 468, 675
DpnI GATC 6 cut(s) 500, 684, 934, 991, 1340, 1542
DpnII GATC 6 cut(s) 498, 682, 932, 989, 1338, 1540
DraIII CACNNNGTG 1 cut(s) 1506
Eam1104I CTCTTC 1 cut(s) 1281
EarI CTCTTC 1 cut(s) 1281
Eco105I TACGTA 1 cut(s) 292
Eco24I GRGCYC 1 cut(s) 584
Eco47III AGCGCT 1 cut(s) 297
Eco57I CTGAAG 1 cut(s) 1305
Eco88I CYCGRG 2 cut(s) 505, 993
EcoO109I RGGNCCY 1 cut(s) 280
EcoRII CCWGG 1 cut(s) 571
EcoT22I ATGCAT 1 cut(s) 172
EcoT38I GRGCYC 1 cut(s) 584
FaqI GGGAC 1 cut(s) 1166
FauI CCCGC 2 cut(s) 400, 1322
FauNDI CATATG 1 cut(s) 915
FbaI TGATCA 1 cut(s) 682
FblI GTMKAC 1 cut(s) 1075
FokI GGATG 3 cut(s) 61, 202, 1076
FriOI GRGCYC 1 cut(s) 584
FspBI CTAG 5 cut(s) 365, 722, 986, 1134, 1268
GlaI GCGC 2 cut(s) 297, 1260
HaeII RGCGCY 1 cut(s) 299
HaeIII GGCC 1 cut(s) 282
HapII CCGG 3 cut(s) 543, 601, 1420
HgaI GACGC 3 cut(s) 104, 237, 811
HhaI GCGC 2 cut(s) 298, 1261
Hin6I GCGC 2 cut(s) 296, 1259
HinP1I GCGC 2 cut(s) 296, 1259
HindIII AAGCTT 1 cut(s) 785
HinfI GANTC 5 cut(s) 752, 920, 1043, 1130, 1239
HpaII CCGG 3 cut(s) 543, 601, 1420
HphI GGTGA 3 cut(s) 243, 808, 1038
Hpy166II GTNNAC 6 cut(s) 39, 90, 495, 1076, 1166, 1500
Hpy188I TCNGA 2 cut(s) 471, 932
Hpy188III TCNNGA 8 cut(s) 46, 496, 686, 722, 993, 1336, 1342, 1400
Hpy8I GTNNAC 6 cut(s) 39, 90, 495, 1076, 1166, 1500
HpyAV CCTTC 2 cut(s) 953, 1539
HpyCH4IV ACGT 2 cut(s) 291, 1317
HpyF10VI GCNNNNNNNGC 4 cut(s) 245, 458, 828, 1380
HpyF3I CTNAG 2 cut(s) 468, 675
HpySE526I ACGT 2 cut(s) 291, 1317
HspAI GCGC 2 cut(s) 296, 1259
Ksp22I TGATCA 1 cut(s) 682
Kzo9I GATC 6 cut(s) 498, 682, 932, 989, 1338, 1540
LmnI GCTCC 4 cut(s) 579, 808, 1115, 1209
LweI GCATC 3 cut(s) 45, 157, 180
MabI ACCWGGT 1 cut(s) 571
MaeI CTAG 5 cut(s) 365, 722, 986, 1134, 1268
MaeII ACGT 2 cut(s) 291, 1317
MaeIII GTNAC 6 cut(s) 179, 249, 444, 796, 1486, 1508
MalI GATC 6 cut(s) 500, 684, 934, 991, 1340, 1542
MboI GATC 6 cut(s) 498, 682, 932, 989, 1338, 1540
MboII GAAGA 6 cut(s) 368, 380, 865, 886, 1283, 1298
MflI RGATCY 1 cut(s) 989
MhlI GDGCHC 1 cut(s) 584
MluCI AATT 2 cut(s) 155, 430
MlyI GAGTC 3 cut(s) 761, 914, 1139
MnlI CCTC 9 cut(s) 53, 477, 508, 514, 762, 957, 968, 1131, 1379
Mph1103I ATGCAT 1 cut(s) 172
MseI TTAA 4 cut(s) 567, 693, 713, 1313
MspA1I CMGCKG 1 cut(s) 101
MspCI CTTAAG 1 cut(s) 712
MspI CCGG 3 cut(s) 543, 601, 1420
MspR9I CCNGG 3 cut(s) 573, 602, 1421
Mva1269I GAATGC 1 cut(s) 212
MvaI CCWGG 1 cut(s) 573
MwoI GCNNNNNNNGC 4 cut(s) 245, 458, 828, 1380
NciI CCSGG 2 cut(s) 602, 1421
NdeI CATATG 1 cut(s) 915
NdeII GATC 6 cut(s) 498, 682, 932, 989, 1338, 1540
NlaIV GGNNCC 5 cut(s) 581, 837, 941, 991, 1281
NmuCI GTSAC 3 cut(s) 179, 249, 796
NsiI ATGCAT 1 cut(s) 172
NspI RCATGY 3 cut(s) 154, 1127, 1462
PaeI GCATGC 1 cut(s) 154
PagI TCATGA 1 cut(s) 1341
PciI ACATGT 1 cut(s) 1123
PctI GAATGC 1 cut(s) 212
PfeI GAWTC 2 cut(s) 1043, 1239
PflMI CCANNNNNTGG 1 cut(s) 1303
PleI GAGTC 3 cut(s) 760, 914, 1138
PpsI GAGTC 3 cut(s) 760, 914, 1138
Ppu21I YACGTR 1 cut(s) 292
PscI ACATGT 1 cut(s) 1123
PsiI TTATAA 1 cut(s) 1445
Psp6I CCWGG 1 cut(s) 571
PspGI CCWGG 1 cut(s) 571
PspN4I GGNNCC 5 cut(s) 581, 837, 941, 991, 1281
PspPI GGNCC 1 cut(s) 280
PsuI RGATCY 1 cut(s) 989
PvuII CAGCTG 1 cut(s) 101
RsaI GTAC 3 cut(s) 1156, 1214, 1499
RsaNI GTAC 3 cut(s) 1155, 1213, 1498
SaqAI TTAA 4 cut(s) 567, 693, 713, 1313
Sau3AI GATC 6 cut(s) 498, 682, 932, 989, 1338, 1540
Sau96I GGNCC 1 cut(s) 280
ScaI AGTACT 1 cut(s) 1156
SchI GAGTC 3 cut(s) 761, 914, 1139
ScrFI CCNGG 3 cut(s) 573, 602, 1421
SduI GDGCHC 1 cut(s) 584
SexAI ACCWGGT 1 cut(s) 571
SfaNI GCATC 3 cut(s) 45, 157, 180
SfcI CTRYAG 1 cut(s) 1492
SmlI CTYRAG 3 cut(s) 652, 712, 1158
SmoI CTYRAG 3 cut(s) 652, 712, 1158
SnaBI TACGTA 1 cut(s) 292
SphI GCATGC 1 cut(s) 154
Sse9I AATT 2 cut(s) 155, 430
SsiI CCGC 3 cut(s) 393, 1329, 1383
SspMI CTAG 5 cut(s) 365, 722, 986, 1134, 1268
StyD4I CCNGG 3 cut(s) 571, 600, 1419
TaiI ACGT 2 cut(s) 294, 1320
TaqI TCGA 3 cut(s) 644, 1097, 1543
TasI AATT 2 cut(s) 155, 430
TatI WGTACW 2 cut(s) 1154, 1212
TfiI GAWTC 2 cut(s) 1043, 1239
Tru1I TTAA 4 cut(s) 567, 693, 713, 1313
Tru9I TTAA 4 cut(s) 567, 693, 713, 1313
TscAI CASTG 3 cut(s) 1381, 1455, 1509
TseFI GTSAC 3 cut(s) 179, 249, 796
Tsp45I GTSAC 3 cut(s) 179, 249, 796
TspDTI ATGAA 5 cut(s) 92, 543, 681, 1188, 1471
TspGWI ACGGA 2 cut(s) 301, 468
TspRI CASTG 3 cut(s) 1381, 1455, 1509
Van91I CCANNNNNTGG 1 cut(s) 1303
Vha464I CTTAAG 1 cut(s) 712
XapI RAATTY 1 cut(s) 430
XbaI TCTAGA 1 cut(s) 721
XceI RCATGY 3 cut(s) 154, 1127, 1462
XmiI GTMKAC 1 cut(s) 1075
XspI CTAG 5 cut(s) 365, 722, 986, 1134, 1268
ZrmI AGTACT 1 cut(s) 1156
Zsp2I ATGCAT 1 cut(s) 172
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.