Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0001179

Physical Location & Seq

Genomic Coordinates Forward (+)

52529428 .. 52530510

Gene Structure 1083 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000009412

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGTGCTCTCTTCCCCACATTCTCACGGTCAAAAAGGAAAATGAACATGATGTGTTAAAATGTTATAGTATGGCTTTGCTTTTTAAACATGAAAGATTGTTTAATTACTTTGTGGTGAGCAGGTTATCAAAAGACCAAAAGCAGAAGAATATTGCAGCATGCACATCGAAGTCTAAACAATCCTTGTATTTACAAAGAGGATGGGTTGGGTTGGCGGCGGCGGCGGCGGTGGAGGGTGATAGGAGAAGTGGAGTTTGGCAGGGATCGAGAGTTGGGGTTGGCGGCGAGGTCGAGACAGGAGATGAGGGACTTGAGGGAGGGGTCGCGGTCGATGAAGGCGGGGAGAAGGAGAGGAGAGGATATCGGCAAAGGAGCGAAGGAGGAACTATCACCGGCACCTCTCCTCCTCAGTTCGAGCTGCTAGACTTCTTCTCCTATTCGCGAGAGTTTCACTTGCTCAGATTTGTTGTTTTTGGTTCTTTGCATATTACTCGGAGGCTTGACAAAACAATTGAGATTTCAAACCGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

177

Amino Acids

19.76

Weight (kDa)

9.01

Isoelectric Point (pI)

53.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001179)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38100 AT2G38100 AT2G38100
fragaria_vesca	FvH4_1g04590 FvH4_1g04590 FvH4_1g04590 FvH4_1g04640 FvH4_1g04640 FvH4_3g23670 FvH4_3g33690 FvH4_4g15600 FvH4_6g11880 FvH4_6g11890 FvH4_6g14971
malus_domestica	MD04G1148300.v1.1 MD12G1161800.v1.1 MD12G1161900.v1.1
prunus_persica	Prupe.6G272300_v2.0.a1 Prupe.6G272400_v2.0.a1 Prupe.6G272500_v2.0.a1 Prupe.6G272600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0061211 RchiOBHm_Chr5g0061221
rosa_laevigata	RLG00000000900 RLG00000002937 RLG00000002938 RLG00000009412 RLG00000019147 RLG00000024767 RLG00000024768 RLG00000035442
rosa_multiflora	Rmu_co8428917.1_g000001 Rmu_sc0001366.1_g000006 Rmu_sc0003267.1_g000026 Rmu_sc0008843.1_g000001
rosa_roxburghii	Rroxscaffold_1G00019490 Rroxscaffold_1G00019500
rosa_rugosa	Rorug03G0066600 Rorug03G0094900 Rorug05G0338700 Rorug05G0338800 Rorug05G0338900 Rorug07G0130600
rosa_samantha	Rh2DG376900 Rh3BG128300 Rh3CG130500 Rh3DG128900 Rh3DG164700 Rh4DG298600 Rh5AG399700 Rh5AG400000 Rh5BG412700 Rh5CG437400 Rh5DG427100
rosa_wichuraiana	Rw3G013480 Rw5G037690 Rw7G022480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	111
AccB1I	GGYRCC	1 cut(s)	395
AccII	CGCG	2 cut(s)	326, 442
AciI	CCGC	9 cut(s)	215, 218, 221, 224, 227, 282, 326, 339, 526
AclWI	GGATC	1 cut(s)	271
AgsI	TTSAA	1 cut(s)	522
AjuI	GAANNNNNNNTTGG	2 cut(s)	238, 270
AluBI	AGCT	1 cut(s)	418
AluI	AGCT	1 cut(s)	418
Alw21I	GWGCWC	1 cut(s)	8
Alw26I	GTCTC	1 cut(s)	287
AlwI	GGATC	1 cut(s)	271
ApeKI	GCWGC	2 cut(s)	155, 418
AsuHPI	GGTGA	3 cut(s)	127, 248, 382
BanI	GGYRCC	1 cut(s)	395
Bbv12I	GWGCWC	1 cut(s)	8
BbvI	GCAGC	2 cut(s)	167, 405
BccI	CCATC	1 cut(s)	195
BcgI	CGANNNNNNTGC	4 cut(s)	147, 181, 473, 507
BcoDI	GTCTC	1 cut(s)	287
BfaI	CTAG	1 cut(s)	422
BfuAI	ACCTGC	1 cut(s)	111
BisI	GCNGC	7 cut(s)	156, 216, 219, 222, 225, 283, 419
BlsI	GCNGC	7 cut(s)	157, 217, 220, 223, 226, 284, 420
BmiI	GGNNCC	1 cut(s)	397
BpuEI	CTTGAG	1 cut(s)	332
BsaXI	ACNNNNNCTCC	4 cut(s)	388, 416, 418, 446
Bse118I	RCCGGY	1 cut(s)	392
BseGI	GGATG	1 cut(s)	206
BseMII	CTCAG	2 cut(s)	422, 472
BseRI	GAGGAG	3 cut(s)	367, 393, 396
BseXI	GCAGC	2 cut(s)	167, 405
Bsh1236I	CGCG	2 cut(s)	326, 442
Bsh1285I	CGRYCG	1 cut(s)	330
BshNI	GGYRCC	1 cut(s)	395
BsiEI	CGRYCG	1 cut(s)	330
BsiHKAI	GWGCWC	1 cut(s)	8
BsiSI	CCGG	1 cut(s)	393
BslFI	GGGAC	1 cut(s)	321
BsmAI	GTCTC	1 cut(s)	287
BsmFI	GGGAC	1 cut(s)	321
Bsp1286I	GDGCHC	1 cut(s)	8
Bsp143I	GATC	1 cut(s)	263
Bsp68I	TCGCGA	1 cut(s)	442
BspACI	CCGC	9 cut(s)	215, 218, 221, 224, 227, 282, 326, 339, 526
BspCNI	CTCAG	2 cut(s)	421, 471
BspFNI	CGCG	2 cut(s)	326, 442
BspLI	GGNNCC	1 cut(s)	397
BspMI	ACCTGC	1 cut(s)	111
BspPI	GGATC	1 cut(s)	271
BspT107I	GGYRCC	1 cut(s)	395
BsrFI	RCCGGY	1 cut(s)	392
BssAI	RCCGGY	1 cut(s)	392
BssMI	GATC	1 cut(s)	263
Bst4CI	ACNGT	1 cut(s)	28
Bst6I	CTCTTC	1 cut(s)	15
BstC8I	GCNNGC	1 cut(s)	160
BstDEI	CTNAG	2 cut(s)	408, 458
BstF5I	GGATG	1 cut(s)	206
BstFNI	CGCG	2 cut(s)	326, 442
BstKTI	GATC	1 cut(s)	266
BstMAI	GTCTC	1 cut(s)	287
BstMBI	GATC	1 cut(s)	263
BstMCI	CGRYCG	1 cut(s)	330
BstMWI	GCNNNNNNNGC	2 cut(s)	221, 224
BstNSI	RCATGY	1 cut(s)	162
BstUI	CGCG	2 cut(s)	326, 442
BstV1I	GCAGC	2 cut(s)	167, 405
BtsCI	GGATG	1 cut(s)	206
BtuMI	TCGCGA	1 cut(s)	442
BveI	ACCTGC	1 cut(s)	111
Cac8I	GCNNGC	1 cut(s)	160
Cfr10I	RCCGGY	1 cut(s)	392
CviAII	CATG	3 cut(s)	47, 89, 159
CviJI	RGCY	3 cut(s)	74, 418, 499
CviKI_1	RGCY	3 cut(s)	74, 418, 499
DdeI	CTNAG	2 cut(s)	408, 458
DpnI	GATC	1 cut(s)	265
DpnII	GATC	1 cut(s)	263
DraI	TTTAAA	1 cut(s)	85
Eam1104I	CTCTTC	1 cut(s)	15
EarI	CTCTTC	1 cut(s)	15
Eco32I	GATATC	1 cut(s)	362
EcoRV	GATATC	1 cut(s)	362
FaeI	CATG	3 cut(s)	50, 92, 162
FaiI	YATR	6 cut(s)	48, 66, 71, 90, 160, 486
FaqI	GGGAC	1 cut(s)	321
FatI	CATG	3 cut(s)	46, 88, 158
FauI	CCCGC	1 cut(s)	332
Fnu4HI	GCNGC	7 cut(s)	156, 216, 219, 222, 225, 283, 419
FokI	GGATG	1 cut(s)	213
Fsp4HI	GCNGC	7 cut(s)	156, 216, 219, 222, 225, 283, 419
FspBI	CTAG	1 cut(s)	422
GluI	GCNGC	7 cut(s)	156, 216, 219, 222, 225, 283, 419
HapII	CCGG	1 cut(s)	393
Hin1II	CATG	3 cut(s)	50, 92, 162
HpaII	CCGG	1 cut(s)	393
HphI	GGTGA	3 cut(s)	127, 248, 382
Hpy188I	TCNGA	2 cut(s)	461, 495
Hpy188III	TCNNGA	3 cut(s)	267, 292, 441
HpyAV	CCTTC	3 cut(s)	329, 340, 371
HpyCH4III	ACNGT	1 cut(s)	28
HpyCH4V	TGCA	3 cut(s)	155, 162, 484
HpyF10VI	GCNNNNNNNGC	2 cut(s)	221, 224
HpyF3I	CTNAG	2 cut(s)	408, 458
Hsp92II	CATG	3 cut(s)	50, 92, 162
Kzo9I	GATC	1 cut(s)	263
LmnI	GCTCC	1 cut(s)	372
LpnPI	CCDG	4 cut(s)	106, 245, 282, 406
Lsp1109I	GCAGC	2 cut(s)	167, 405
MaeI	CTAG	1 cut(s)	422
MalI	GATC	1 cut(s)	265
MboI	GATC	1 cut(s)	263
MboII	GAAGA	2 cut(s)	157, 421
MfeI	CAATTG	1 cut(s)	510
MhlI	GDGCHC	1 cut(s)	8
MluCI	AATT	2 cut(s)	103, 510
MseI	TTAA	3 cut(s)	56, 84, 102
MspA1I	CMGCKG	1 cut(s)	528
MspI	CCGG	1 cut(s)	393
MunI	CAATTG	1 cut(s)	510
MvnI	CGCG	2 cut(s)	326, 442
MwoI	GCNNNNNNNGC	2 cut(s)	221, 224
NdeII	GATC	1 cut(s)	263
NlaIII	CATG	3 cut(s)	50, 92, 162
NlaIV	GGNNCC	1 cut(s)	397
NruI	TCGCGA	1 cut(s)	442
NspI	RCATGY	1 cut(s)	162
PaeI	GCATGC	1 cut(s)	162
PkrI	GCNGC	7 cut(s)	157, 217, 220, 223, 226, 284, 420
PspN4I	GGNNCC	1 cut(s)	397
RruI	TCGCGA	1 cut(s)	442
SaqAI	TTAA	3 cut(s)	56, 84, 102
SatI	GCNGC	7 cut(s)	156, 216, 219, 222, 225, 283, 419
Sau3AI	GATC	1 cut(s)	263
SduI	GDGCHC	1 cut(s)	8
SetI	ASST	4 cut(s)	125, 291, 401, 420
SmlI	CTYRAG	1 cut(s)	311
SmoI	CTYRAG	1 cut(s)	311
SphI	GCATGC	1 cut(s)	162
Sse9I	AATT	2 cut(s)	103, 510
SsiI	CCGC	9 cut(s)	215, 218, 221, 224, 227, 282, 326, 339, 526
SspI	AATATT	1 cut(s)	151
SspMI	CTAG	1 cut(s)	422
TaaI	ACNGT	1 cut(s)	28
TaqI	TCGA	5 cut(s)	167, 266, 291, 330, 414
TasI	AATT	2 cut(s)	103, 510
TauI	GCSGC	5 cut(s)	218, 221, 224, 227, 285
Tru1I	TTAA	3 cut(s)	56, 84, 102
Tru9I	TTAA	3 cut(s)	56, 84, 102
TseI	GCWGC	2 cut(s)	155, 418
TspDTI	ATGAA	3 cut(s)	57, 105, 348
XceI	RCATGY	1 cut(s)	162
XspI	CTAG	1 cut(s)	422

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.