Rh3DG164700

POT family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0001179
Physical Location & Seq
Reverse (-)
14288711 .. 14290125
1415 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG164700.1

Sequence Viewer

Length: 1290 bp
ATGGCTGGTCAGATAACATCGGTAGAGGCATTCGCCGATCAGAACTCAAAACCAAGTTGGAAGATGATGGGTATTAATGGCTTGGTCATTTCGTTCATTGTGTCGGCCCTTACTTCAATATGCGTAGTATTGGCACTTGGTCATATCAAGCCTTGGTGGATATTGTTTGGGATCGCAGCCATTTGTACCCTGGGAGCAACACTCACTTTCTTGAGTGGTTCAGCTTCGTACAAATATCCGAAATCCCAAGAAAGCGCTATCACCACTTTGCTAAGAGTCTTTGTGGCCTCTTTCTCCAAAATATCCAAAACTCATCCAGGGTGTGATAGTTTGTATATCTCATACAGTTTCTATCAGATACCTTATACTAATCGCCTCAGATGCCTCGACAAGGCTGCAATCATATTACCCGCGTCACCTTCTATTGAGCAACAACAAAAAAGGCGGTGGAGACTCTGCACGGTGACAGAAGTGGAAGAAACAAAAAAGATCATATGCATGATTCCAATATGGATGAACTTTATCCTAATCGGTGTTGTATCTTCTATTGGAAATACTTACTTCGTTGAACAAGCAAACAACTTGAATAAACGGTACGGCCTGAAGATTGAAGGTCATAGTCGTGGTCCTTTTCCTCTTCTTGTCCTTCTTGTGTTGCAGGAGTATGCAAGGGCGTTGTTATCTCACCTTCCTTGGGAAGAACCTTGTAGGCTTTCTAGACCCTTCAAATACCTAGACCCTTCAAACACAAGGAGGTACGCTCCCCTACTTGCACTGTCGATGACAATGGCAAGTTTATGTTGCATTGTAGCTGCATCGGTGGAGCGTCTAAGGTTATCTGTGGTTAAGAGCCACGGTTTGCTTGATGAACCGAACAAAGGAATTCCCATGAACAGAGCTTGGTTGATTCCGCAGTTTATTCTCCTTGGATTCCTTAATGGGTCTAAAGAGACAGCCTTCCGTTTCTTGCTCCTTGGTGAGGTACCTCAACCCGGTAATCGGTACAGGGCTTTGGCTCATGGTGTTTTTGGAGTGGGGACTATAAGCAGTGTGTTGTCTGTTTATTTAGTAGGTAAAACGAAACTCACTTGGTTCCAAGAAACCCTAAACAGAAGTCGTTTGGACAATTACTACTGGACCTTGGCTGCTTTGACTGCAGCTAATCTGCTGTTCTATGTTTCATTGAGCTTTCCATGTTGGTCTTCTCATCATGATCCGGACAGTGTACATCGGCCCAACGACATCCACACTGATTGTGAAGTAGAAGCAGAGATGGACATCGCTCCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PTR2

Protein Analysis

429

Amino Acids

48.06

Weight (kDa)

9.1

Isoelectric Point (pI)

41.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PTR2 PF00854 34 - 316 1.4e-20 POT family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 982
AccB1I GGYRCC 1 cut(s) 982
AccII CGCG 1 cut(s) 413
AccIII TCCGGA 1 cut(s) 1216
AciI CCGC 3 cut(s) 411, 445, 911
AclWI GGATC 2 cut(s) 179, 1208
AcsI RAATTY 1 cut(s) 882
AcuI CTGAAG 1 cut(s) 623
AfaI GTAC 7 cut(s) 187, 230, 596, 758, 984, 1004, 1227
AfeI AGCGCT 1 cut(s) 256
AfiI CCNNNNNNNGG 6 cut(s) 391, 694, 878, 979, 992, 999
AgsI TTSAA 6 cut(s) 117, 569, 586, 611, 727, 744
AjnI CCWGG 2 cut(s) 189, 316
AluBI AGCT 5 cut(s) 224, 812, 899, 1160, 1188
AluI AGCT 5 cut(s) 224, 812, 899, 1160, 1188
Alw26I GTCTC 2 cut(s) 445, 944
AlwI GGATC 2 cut(s) 179, 1208
Aor13HI TCCGGA 1 cut(s) 1216
Aor51HI AGCGCT 1 cut(s) 256
AoxI GGCC 4 cut(s) 105, 285, 598, 1232
ApeKI GCWGC 5 cut(s) 176, 395, 812, 1145, 1157
ApoI RAATTY 1 cut(s) 882
AseI ATTAAT 1 cut(s) 75
Asp718I GGTACC 1 cut(s) 982
AspLEI GCGC 1 cut(s) 257
AspS9I GGNCC 4 cut(s) 106, 626, 1137, 1233
AsuC2I CCSGG 1 cut(s) 993
AsuHPI GGTGA 5 cut(s) 253, 408, 475, 677, 989
AvaII GGWCC 2 cut(s) 626, 1137
BanI GGYRCC 1 cut(s) 982
BbsI GAAGAC 1 cut(s) 1194
BbvI GCAGC 5 cut(s) 188, 382, 799, 1132, 1169
BccI CCATC 2 cut(s) 61, 1267
BceAI ACGGC 1 cut(s) 613
BcgI CGANNNNNNTGC 2 cut(s) 377, 411
BciT130I CCWGG 2 cut(s) 191, 318
BcnI CCSGG 1 cut(s) 993
BcoDI GTCTC 2 cut(s) 445, 944
BfaI CTAG 2 cut(s) 717, 734
BfmI CTRYAG 1 cut(s) 1155
BfoI RGCGCY 1 cut(s) 258
BisI GCNGC 5 cut(s) 177, 396, 813, 1146, 1158
BlsI GCNGC 5 cut(s) 178, 397, 814, 1147, 1159
Bme1390I CCNGG 3 cut(s) 191, 318, 993
Bme18I GGWCC 2 cut(s) 626, 1137
BmgT120I GGNCC 4 cut(s) 106, 626, 1137, 1233
BmiI GGNNCC 2 cut(s) 984, 1094
BmrFI CCNGG 3 cut(s) 191, 318, 993
BmsI GCATC 2 cut(s) 371, 824
BpiI GAAGAC 1 cut(s) 1194
BplI GAGNNNNNCTC 4 cut(s) 186, 218, 745, 777
BpuEI CTTGAG 1 cut(s) 232
BpuMI CCSGG 1 cut(s) 993
BsaBI GATNNNNATC 1 cut(s) 1277
BsaJI CCNNGG 9 cut(s) 152, 189, 190, 317, 692, 853, 925, 973, 1140
BsaWI WCCGGW 1 cut(s) 1216
Bsc4I CCNNNNNNNGG 6 cut(s) 391, 694, 878, 979, 992, 999
Bse1I ACTGG 1 cut(s) 1139
Bse8I GATNNNNATC 1 cut(s) 1277
BseAI TCCGGA 1 cut(s) 1216
BseBI CCWGG 2 cut(s) 191, 318
BseDI CCNNGG 9 cut(s) 152, 189, 190, 317, 692, 853, 925, 973, 1140
BseGI GGATG 3 cut(s) 313, 519, 1242
BseJI GATNNNNATC 1 cut(s) 1277
BseLI CCNNNNNNNGG 6 cut(s) 391, 694, 878, 979, 992, 999
BseMII CTCAG 1 cut(s) 391
BseNI ACTGG 1 cut(s) 1139
BseXI GCAGC 5 cut(s) 188, 382, 799, 1132, 1169
BsgI GTGCAG 1 cut(s) 442
Bsh1236I CGCG 1 cut(s) 413
BshFI GGCC 4 cut(s) 107, 287, 600, 1234
BshNI GGYRCC 1 cut(s) 982
BsiSI CCGG 2 cut(s) 993, 1217
BslFI GGGAC 1 cut(s) 1051
BslI CCNNNNNNNGG 6 cut(s) 391, 694, 878, 979, 992, 999
BsmAI GTCTC 2 cut(s) 445, 944
BsmFI GGGAC 1 cut(s) 1051
BsmI GAATGC 1 cut(s) 29
BsnI GGCC 4 cut(s) 107, 287, 600, 1234
Bsp13I TCCGGA 1 cut(s) 1216
Bsp1407I TGTACA 1 cut(s) 1225
Bsp143I GATC 4 cut(s) 37, 171, 489, 1213
BspACI CCGC 3 cut(s) 411, 445, 911
BspANI GGCC 4 cut(s) 107, 287, 600, 1234
BspCNI CTCAG 1 cut(s) 390
BspEI TCCGGA 1 cut(s) 1216
BspFNI CGCG 1 cut(s) 413
BspHI TCATGA 1 cut(s) 1210
BspLI GGNNCC 2 cut(s) 984, 1094
BspMAI CTGCAG 1 cut(s) 1159
BspPI GGATC 2 cut(s) 179, 1208
BspT107I GGYRCC 1 cut(s) 982
BsrGI TGTACA 1 cut(s) 1225
BsrI ACTGG 1 cut(s) 1139
BssECI CCNNGG 9 cut(s) 152, 189, 190, 317, 692, 853, 925, 973, 1140
BssMI GATC 4 cut(s) 37, 171, 489, 1213
BssT1I CCWWGG 5 cut(s) 152, 692, 925, 973, 1140
Bst2UI CCWGG 2 cut(s) 191, 318
Bst4CI ACNGT 6 cut(s) 347, 463, 594, 777, 857, 1223
Bst6I CTCTTC 1 cut(s) 642
BstAUI TGTACA 1 cut(s) 1225
BstDEI CTNAG 4 cut(s) 272, 377, 830, 1287
BstDSI CCRYGG 1 cut(s) 853
BstENI CCTNNNNNAGG 2 cut(s) 389, 977
BstF5I GGATG 3 cut(s) 313, 519, 1242
BstFNI CGCG 1 cut(s) 413
BstH2I RGCGCY 1 cut(s) 258
BstHHI GCGC 1 cut(s) 257
BstKTI GATC 4 cut(s) 40, 174, 492, 1216
BstMAI GTCTC 2 cut(s) 445, 944
BstMBI GATC 4 cut(s) 37, 171, 489, 1213
BstMWI GCNNNNNNNGC 2 cut(s) 381, 1154
BstNI CCWGG 2 cut(s) 191, 318
BstSCI CCNGG 3 cut(s) 189, 316, 991
BstSFI CTRYAG 1 cut(s) 1155
BstUI CGCG 1 cut(s) 413
BstV1I GCAGC 5 cut(s) 188, 382, 799, 1132, 1169
BstV2I GAAGAC 1 cut(s) 1194
BsuRI GGCC 4 cut(s) 107, 287, 600, 1234
BtgI CCRYGG 1 cut(s) 853
BtgZI GCGATG 1 cut(s) 1264
BtsCI GGATG 3 cut(s) 313, 519, 1242
BtsI GCAGTG 1 cut(s) 1054
BtsIMutI CAGTG 4 cut(s) 773, 1054, 1228, 1248
CciI TCATGA 1 cut(s) 1210
CfoI GCGC 1 cut(s) 257
Cfr13I GGNCC 4 cut(s) 106, 626, 1137, 1233
CseI GACGC 2 cut(s) 402, 815
Csp6I GTAC 7 cut(s) 186, 229, 595, 757, 983, 1003, 1226
CspCI CAANNNNNGTGG 2 cut(s) 1235, 1270
CviAII CATG 5 cut(s) 499, 889, 1019, 1194, 1211
CviQI GTAC 7 cut(s) 186, 229, 595, 757, 983, 1003, 1226
DdeI CTNAG 4 cut(s) 272, 377, 830, 1287
DpnI GATC 4 cut(s) 39, 173, 491, 1215
DpnII GATC 4 cut(s) 37, 171, 489, 1213
Eam1104I CTCTTC 1 cut(s) 642
EarI CTCTTC 1 cut(s) 642
Eco130I CCWWGG 5 cut(s) 152, 692, 925, 973, 1140
Eco47I GGWCC 2 cut(s) 626, 1137
Eco47III AGCGCT 1 cut(s) 256
Eco57I CTGAAG 1 cut(s) 623
EcoNI CCTNNNNNAGG 2 cut(s) 389, 977
EcoRI GAATTC 1 cut(s) 882
EcoRII CCWGG 2 cut(s) 189, 316
EcoT14I CCWWGG 5 cut(s) 152, 692, 925, 973, 1140
EcoT22I ATGCAT 1 cut(s) 500
ErhI CCWWGG 5 cut(s) 152, 692, 925, 973, 1140
FaeI CATG 5 cut(s) 502, 892, 1022, 1197, 1214
FaqI GGGAC 1 cut(s) 1051
FatI CATG 5 cut(s) 498, 888, 1018, 1193, 1210
FauI CCCGC 1 cut(s) 418
FauNDI CATATG 1 cut(s) 494
Fnu4HI GCNGC 5 cut(s) 177, 396, 813, 1146, 1158
FokI GGATG 3 cut(s) 300, 526, 1229
Fsp4HI GCNGC 5 cut(s) 177, 396, 813, 1146, 1158
FspBI CTAG 2 cut(s) 717, 734
GlaI GCGC 1 cut(s) 256
GluI GCNGC 5 cut(s) 177, 396, 813, 1146, 1158
HaeII RGCGCY 1 cut(s) 258
HaeIII GGCC 4 cut(s) 107, 287, 600, 1234
HapII CCGG 2 cut(s) 993, 1217
HgaI GACGC 2 cut(s) 402, 815
HhaI GCGC 1 cut(s) 257
Hin1II CATG 5 cut(s) 502, 892, 1022, 1197, 1214
Hin6I GCGC 1 cut(s) 255
HinP1I GCGC 1 cut(s) 255
HinfI GANTC 5 cut(s) 276, 453, 502, 907, 930
HpaII CCGG 2 cut(s) 993, 1217
HphI GGTGA 5 cut(s) 253, 408, 475, 677, 989
Hpy166II GTNNAC 1 cut(s) 1226
Hpy188I TCNGA 5 cut(s) 12, 42, 240, 357, 380
Hpy188III TCNNGA 4 cut(s) 211, 717, 1211, 1217
Hpy8I GTNNAC 1 cut(s) 1226
HpyAV CCTTC 7 cut(s) 429, 605, 656, 698, 733, 750, 967
HpyCH4III ACNGT 6 cut(s) 347, 463, 594, 777, 857, 1223
HpyCH4V TGCA 9 cut(s) 398, 459, 498, 658, 668, 773, 804, 815, 1157
HpyF10VI GCNNNNNNNGC 2 cut(s) 381, 1154
HpyF3I CTNAG 4 cut(s) 272, 377, 830, 1287
Hsp92II CATG 5 cut(s) 502, 892, 1022, 1197, 1214
HspAI GCGC 1 cut(s) 255
Kpn2I TCCGGA 1 cut(s) 1216
KpnI GGTACC 1 cut(s) 986
Kzo9I GATC 4 cut(s) 37, 171, 489, 1213
LmnI GCTCC 5 cut(s) 194, 766, 823, 975, 1288
Lsp1109I GCAGC 5 cut(s) 188, 382, 799, 1132, 1169
LweI GCATC 2 cut(s) 371, 824
MaeI CTAG 2 cut(s) 717, 734
MaeIII GTNAC 2 cut(s) 414, 463
MalI GATC 4 cut(s) 39, 173, 491, 1215
MboI GATC 4 cut(s) 37, 171, 489, 1213
MboII GAAGA 7 cut(s) 73, 488, 534, 616, 629, 710, 1194
MluCI AATT 2 cut(s) 882, 1126
MlyI GAGTC 2 cut(s) 285, 447
MmeI TCCRAC 1 cut(s) 38
MnlI CCTC 8 cut(s) 19, 298, 386, 395, 645, 747, 973, 996
Mph1103I ATGCAT 1 cut(s) 500
MroI TCCGGA 1 cut(s) 1216
MseI TTAA 3 cut(s) 75, 846, 936
MslI CAYNNNNRTG 2 cut(s) 497, 621
MspI CCGG 2 cut(s) 993, 1217
MspR9I CCNGG 3 cut(s) 191, 318, 993
Mva1269I GAATGC 1 cut(s) 29
MvaI CCWGG 2 cut(s) 191, 318
MvnI CGCG 1 cut(s) 413
MwoI GCNNNNNNNGC 2 cut(s) 381, 1154
NciI CCSGG 1 cut(s) 993
NdeI CATATG 1 cut(s) 494
NdeII GATC 4 cut(s) 37, 171, 489, 1213
NlaIII CATG 5 cut(s) 502, 892, 1022, 1197, 1214
NlaIV GGNNCC 2 cut(s) 984, 1094
NmuCI GTSAC 2 cut(s) 414, 463
NsiI ATGCAT 1 cut(s) 500
PagI TCATGA 1 cut(s) 1210
PasI CCCWGGG 1 cut(s) 190
PctI GAATGC 1 cut(s) 29
PfeI GAWTC 3 cut(s) 502, 907, 930
PkrI GCNGC 5 cut(s) 178, 397, 814, 1147, 1159
PleI GAGTC 2 cut(s) 284, 447
PpsI GAGTC 2 cut(s) 284, 447
PshBI ATTAAT 1 cut(s) 75
Psp6I CCWGG 2 cut(s) 189, 316
PspGI CCWGG 2 cut(s) 189, 316
PspN4I GGNNCC 2 cut(s) 984, 1094
PspPI GGNCC 4 cut(s) 106, 626, 1137, 1233
PstI CTGCAG 1 cut(s) 1159
RsaI GTAC 7 cut(s) 187, 230, 596, 758, 984, 1004, 1227
RsaNI GTAC 7 cut(s) 186, 229, 595, 757, 983, 1003, 1226
RseI CAYNNNNRTG 2 cut(s) 497, 621
SaqAI TTAA 3 cut(s) 75, 846, 936
SatI GCNGC 5 cut(s) 177, 396, 813, 1146, 1158
Sau3AI GATC 4 cut(s) 37, 171, 489, 1213
Sau96I GGNCC 4 cut(s) 106, 626, 1137, 1233
SchI GAGTC 2 cut(s) 285, 447
ScrFI CCNGG 3 cut(s) 191, 318, 993
SfaNI GCATC 2 cut(s) 371, 824
SfcI CTRYAG 1 cut(s) 1155
SinI GGWCC 2 cut(s) 626, 1137
SmiMI CAYNNNNRTG 2 cut(s) 497, 621
SmlI CTYRAG 1 cut(s) 211
SmoI CTYRAG 1 cut(s) 211
Sse9I AATT 2 cut(s) 882, 1126
SsiI CCGC 3 cut(s) 411, 445, 911
SspMI CTAG 2 cut(s) 717, 734
StyD4I CCNGG 3 cut(s) 189, 316, 991
StyI CCWWGG 5 cut(s) 152, 692, 925, 973, 1140
TaaI ACNGT 6 cut(s) 347, 463, 594, 777, 857, 1223
TaqI TCGA 2 cut(s) 387, 779
TasI AATT 2 cut(s) 882, 1126
TatI WGTACW 1 cut(s) 1225
TfiI GAWTC 3 cut(s) 502, 907, 930
Tru1I TTAA 3 cut(s) 75, 846, 936
Tru9I TTAA 3 cut(s) 75, 846, 936
TscAI CASTG 4 cut(s) 780, 1054, 1228, 1255
TseFI GTSAC 2 cut(s) 414, 463
TseI GCWGC 5 cut(s) 176, 395, 812, 1145, 1157
Tsp45I GTSAC 2 cut(s) 414, 463
TspDTI ATGAA 5 cut(s) 85, 530, 882, 905, 1170
TspGWI ACGGA 1 cut(s) 950
TspRI CASTG 4 cut(s) 780, 1054, 1228, 1255
VpaK11BI GGWCC 2 cut(s) 626, 1137
VspI ATTAAT 1 cut(s) 75
XagI CCTNNNNNAGG 2 cut(s) 389, 977
XapI RAATTY 1 cut(s) 882
XbaI TCTAGA 1 cut(s) 716
XcmI CCANNNNNNNNNTGG 1 cut(s) 187
XspI CTAG 2 cut(s) 717, 734
Zsp2I ATGCAT 1 cut(s) 500
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.