Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0001179

Physical Location & Seq

Genomic Coordinates Reverse (-)

66347230 .. 66350488

Gene Structure 3259 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G037690.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

ATGTCCTCATCTAATACTCGGATGATTCAGATGATGGTTTGGGTGAAAATCGCTGTTCTGCAGAAGACGTATTTACTGACTGGATATGCAATGAGCACAATGATTACATACTTGACTAGTGTATGGAAGTTAAATCTCACAGATGCTGCCGCTGTCGTCAATGTGTATGCCGGCGCAGTGGCCGTAATGCCACTGGGCATGCTTTTTGTTGTTGATACTGTAATCGGTAACTATTGGTTGATCATACTCTCCGGTTGTGCTTACACCATGGGGTTTTTCCTCTTGACCATGTCAACACCACCAATTCTTTATGTGGCAACAGGCACTTGTGGTGCATATGAGGCCGAGTGCATTGGCAAAGTACAAAAGATTCTCTTTTACACAGCCTTAACTCTAATAGCTCTGGGAGCCTCTGGTCGCTTTATGGTTCGTGCATTCAGAGAAGAGCAGTTGATCAAGCCACTATTAGAAGGCGCCAAAAAAATGAAGTTTTTGCTCTGTCAGTGTGCCCTAAGAAACTGCATTAGTGGAAAACAGAAGGTTGGCGTGGTTAAGAGACATGGTTTGCTTAACAAGCCCGATGAGACAGTTCCCATGACCATGTTCTGGTTGCTTCCACAGTTTCTTCTCGTTGGAGGCGTTTCTGGGCTTTCCGAGAAGTGCATTGCTCTTTTCTACACTGATGTGAGTACGGAAAAAGATGGTGAGGGGCACATTGATCCCGAAAGGGCAGAACAAAAATCCAAGCGTCAATACATAGAGTTTTTTGTTGATGCTCTTGAGGGAATGGGAAATATAGGCAGTGTGGTGTTGGTCTATGTAGTGGGTGAAATAAAACCTACTTGGTTCCAAGAAACGGTAAACCGAAGTCATTTGGATAATTATTACTGGACTTTGGCTGCATTGACTGCAGCTAATTTGATATTGTTTATTCCAGTAATATTCTTCCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PTR2

Protein Analysis

317

Amino Acids

35.31

Weight (kDa)

8.72

Isoelectric Point (pI)

32.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001179)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38100 AT2G38100 AT2G38100
fragaria_vesca	FvH4_1g04590 FvH4_1g04590 FvH4_1g04590 FvH4_1g04640 FvH4_1g04640 FvH4_3g23670 FvH4_3g33690 FvH4_4g15600 FvH4_6g11880 FvH4_6g11890 FvH4_6g14971
malus_domestica	MD04G1148300.v1.1 MD12G1161800.v1.1 MD12G1161900.v1.1
prunus_persica	Prupe.6G272300_v2.0.a1 Prupe.6G272400_v2.0.a1 Prupe.6G272500_v2.0.a1 Prupe.6G272600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0061211 RchiOBHm_Chr5g0061221
rosa_laevigata	RLG00000000900 RLG00000002937 RLG00000002938 RLG00000009412 RLG00000019147 RLG00000024767 RLG00000024768 RLG00000035442
rosa_multiflora	Rmu_co8428917.1_g000001 Rmu_sc0001366.1_g000006 Rmu_sc0003267.1_g000026 Rmu_sc0008843.1_g000001
rosa_roxburghii	Rroxscaffold_1G00019490 Rroxscaffold_1G00019500
rosa_rugosa	Rorug03G0066600 Rorug03G0094900 Rorug05G0338700 Rorug05G0338800 Rorug05G0338900 Rorug07G0130600
rosa_samantha	Rh2DG376900 Rh3BG128300 Rh3CG130500 Rh3DG128900 Rh3DG164700 Rh4DG298600 Rh5AG399700 Rh5AG400000 Rh5BG412700 Rh5CG437400 Rh5DG427100
rosa_wichuraiana	Rw3G013480 Rw5G037690 Rw7G022480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	473
AccB7I	CCANNNNNTGG	1 cut(s)	606
AciI	CCGC	1 cut(s)	150
AclWI	GGATC	1 cut(s)	713
AcoI	YGGCCR	1 cut(s)	180
AcyI	GRCGYC	1 cut(s)	474
AfaI	GTAC	2 cut(s)	363, 691
AfiI	CCNNNNNNNGG	2 cut(s)	606, 856
AhlI	ACTAGT	1 cut(s)	116
AleI	CACNNNNGTG	1 cut(s)	683
AluBI	AGCT	2 cut(s)	401, 914
AluI	AGCT	2 cut(s)	401, 914
Alw21I	GWGCWC	1 cut(s)	98
Alw26I	GTCTC	2 cut(s)	550, 578
AlwI	GGATC	1 cut(s)	713
AlwNI	CAGNNNCTG	1 cut(s)	146
AoxI	GGCC	2 cut(s)	180, 342
ApeKI	GCWGC	3 cut(s)	146, 899, 911
AspLEI	GCGC	2 cut(s)	176, 476
AsuHPI	GGTGA	3 cut(s)	55, 716, 839
BaeGI	GKGCMC	2 cut(s)	511, 714
BanI	GGYRCC	1 cut(s)	473
BbsI	GAAGAC	1 cut(s)	71
Bbv12I	GWGCWC	1 cut(s)	98
BbvI	GCAGC	3 cut(s)	133, 886, 923
BccI	CCATC	2 cut(s)	28, 695
BceAI	ACGGC	1 cut(s)	167
BclI	TGATCA	2 cut(s)	240, 453
BcoDI	GTCTC	2 cut(s)	550, 578
BcuI	ACTAGT	1 cut(s)	116
BfaI	CTAG	1 cut(s)	117
BfmI	CTRYAG	2 cut(s)	59, 909
BfoI	RGCGCY	1 cut(s)	477
BisI	GCNGC	4 cut(s)	147, 150, 900, 912
BlsI	GCNGC	4 cut(s)	148, 151, 901, 913
BmiI	GGNNCC	3 cut(s)	409, 475, 848
BmrI	ACTGGG	1 cut(s)	203
BmsI	GCATC	2 cut(s)	133, 763
BmuI	ACTGGG	1 cut(s)	203
BpiI	GAAGAC	1 cut(s)	71
BpuEI	CTTGAG	1 cut(s)	800
BsaHI	GRCGYC	1 cut(s)	474
BsaJI	CCNNGG	1 cut(s)	267
BsaWI	WCCGGW	1 cut(s)	251
Bsc4I	CCNNNNNNNGG	2 cut(s)	606, 856
Bse118I	RCCGGY	1 cut(s)	170
Bse1I	ACTGG	4 cut(s)	85, 198, 893, 935
Bse3DI	GCAATG	2 cut(s)	96, 663
BseDI	CCNNGG	1 cut(s)	267
BseGI	GGATG	1 cut(s)	27
BseLI	CCNNNNNNNGG	2 cut(s)	606, 856
BseMI	GCAATG	2 cut(s)	96, 663
BseNI	ACTGG	4 cut(s)	85, 198, 893, 935
BseSI	GKGCMC	2 cut(s)	511, 714
BseXI	GCAGC	3 cut(s)	133, 886, 923
BshFI	GGCC	2 cut(s)	182, 344
BshNI	GGYRCC	1 cut(s)	473
BsiHKAI	GWGCWC	1 cut(s)	98
BsiSI	CCGG	2 cut(s)	171, 252
BslI	CCNNNNNNNGG	2 cut(s)	606, 856
BsmAI	GTCTC	2 cut(s)	550, 578
BsmI	GAATGC	1 cut(s)	434
BsnI	GGCC	2 cut(s)	182, 344
Bsp1286I	GDGCHC	3 cut(s)	98, 511, 714
Bsp143I	GATC	3 cut(s)	240, 453, 718
Bsp19I	CCATGG	1 cut(s)	267
BspACI	CCGC	1 cut(s)	150
BspANI	GGCC	2 cut(s)	182, 344
BspLI	GGNNCC	3 cut(s)	409, 475, 848
BspMAI	CTGCAG	2 cut(s)	63, 913
BspPI	GGATC	1 cut(s)	713
BspQI	GCTCTTC	1 cut(s)	438
BspT107I	GGYRCC	1 cut(s)	473
BsrDI	GCAATG	2 cut(s)	96, 663
BsrFI	RCCGGY	1 cut(s)	170
BsrI	ACTGG	4 cut(s)	85, 198, 893, 935
BssAI	RCCGGY	1 cut(s)	170
BssECI	CCNNGG	1 cut(s)	267
BssMI	GATC	3 cut(s)	240, 453, 718
BssNI	GRCGYC	1 cut(s)	474
BssT1I	CCWWGG	1 cut(s)	267
Bst4CI	ACNGT	4 cut(s)	220, 589, 621, 859
Bst6I	CTCTTC	1 cut(s)	438
BstACI	GRCGYC	1 cut(s)	474
BstAPI	GCANNNNNTGC	1 cut(s)	908
BstC8I	GCNNGC	2 cut(s)	172, 200
BstDEI	CTNAG	1 cut(s)	512
BstDSI	CCRYGG	1 cut(s)	267
BstF5I	GGATG	1 cut(s)	27
BstH2I	RGCGCY	1 cut(s)	477
BstHHI	GCGC	2 cut(s)	176, 476
BstKTI	GATC	3 cut(s)	243, 456, 721
BstMAI	GTCTC	2 cut(s)	550, 578
BstMBI	GATC	3 cut(s)	240, 453, 718
BstMWI	GCNNNNNNNGC	4 cut(s)	341, 407, 574, 908
BstNSI	RCATGY	1 cut(s)	202
BstSFI	CTRYAG	2 cut(s)	59, 909
BstSLI	GKGCMC	2 cut(s)	511, 714
BstV1I	GCAGC	3 cut(s)	133, 886, 923
BstV2I	GAAGAC	1 cut(s)	71
BsuRI	GGCC	2 cut(s)	182, 344
BtgI	CCRYGG	1 cut(s)	267
BtsCI	GGATG	1 cut(s)	27
BtsI	GCAGTG	2 cut(s)	183, 808
BtsIMutI	CAGTG	5 cut(s)	183, 191, 509, 678, 808
Cac8I	GCNNGC	2 cut(s)	172, 200
CaiI	CAGNNNCTG	1 cut(s)	146
CfoI	GCGC	2 cut(s)	176, 476
Cfr10I	RCCGGY	1 cut(s)	170
CseI	GACGC	1 cut(s)	737
Csp6I	GTAC	2 cut(s)	362, 690
CviAII	CATG	6 cut(s)	199, 268, 289, 560, 595, 601
CviQI	GTAC	2 cut(s)	362, 690
DdeI	CTNAG	1 cut(s)	512
DinI	GGCGCC	1 cut(s)	475
DpnI	GATC	3 cut(s)	242, 455, 720
DpnII	GATC	3 cut(s)	240, 453, 718
EaeI	YGGCCR	1 cut(s)	180
Eam1104I	CTCTTC	1 cut(s)	438
EarI	CTCTTC	1 cut(s)	438
Eco130I	CCWWGG	1 cut(s)	267
EcoT14I	CCWWGG	1 cut(s)	267
EgeI	GGCGCC	1 cut(s)	475
EheI	GGCGCC	1 cut(s)	475
ErhI	CCWWGG	1 cut(s)	267
FaeI	CATG	6 cut(s)	202, 271, 292, 563, 598, 604
FalI	AAGNNNNNCTT	2 cut(s)	359, 391
FatI	CATG	6 cut(s)	198, 267, 288, 559, 594, 600
FauNDI	CATATG	1 cut(s)	337
FbaI	TGATCA	2 cut(s)	240, 453
Fnu4HI	GCNGC	4 cut(s)	147, 150, 900, 912
FokI	GGATG	1 cut(s)	34
Fsp4HI	GCNGC	4 cut(s)	147, 150, 900, 912
FspBI	CTAG	1 cut(s)	117
GlaI	GCGC	2 cut(s)	175, 475
GluI	GCNGC	4 cut(s)	147, 150, 900, 912
HaeII	RGCGCY	1 cut(s)	477
HaeIII	GGCC	2 cut(s)	182, 344
HapII	CCGG	2 cut(s)	171, 252
HgaI	GACGC	1 cut(s)	737
HhaI	GCGC	2 cut(s)	176, 476
Hin1I	GRCGYC	1 cut(s)	474
Hin1II	CATG	6 cut(s)	202, 271, 292, 563, 598, 604
Hin6I	GCGC	2 cut(s)	174, 474
HinP1I	GCGC	2 cut(s)	174, 474
HincII	GTYRAC	1 cut(s)	294
HindII	GTYRAC	1 cut(s)	294
HinfI	GANTC	2 cut(s)	25, 370
HpaII	CCGG	2 cut(s)	171, 252
HphI	GGTGA	3 cut(s)	55, 716, 839
Hpy166II	GTNNAC	2 cut(s)	294, 862
Hpy188I	TCNGA	4 cut(s)	21, 30, 440, 655
Hpy188III	TCNNGA	3 cut(s)	283, 722, 779
Hpy8I	GTNNAC	2 cut(s)	294, 862
HpyAV	CCTTC	2 cut(s)	464, 532
HpyCH4III	ACNGT	4 cut(s)	220, 589, 621, 859
HpyCH4IV	ACGT	1 cut(s)	68
HpyCH4V	TGCA	9 cut(s)	61, 89, 335, 351, 434, 522, 663, 902, 911
HpyF10VI	GCNNNNNNNGC	4 cut(s)	341, 407, 574, 908
HpyF3I	CTNAG	1 cut(s)	512
HpySE526I	ACGT	1 cut(s)	68
Hsp92I	GRCGYC	1 cut(s)	474
Hsp92II	CATG	6 cut(s)	202, 271, 292, 563, 598, 604
HspAI	GCGC	2 cut(s)	174, 474
KasI	GGCGCC	1 cut(s)	473
KroI	GCCGGC	1 cut(s)	170
KroNI	GCCGGC	1 cut(s)	172
Ksp22I	TGATCA	2 cut(s)	240, 453
Kzo9I	GATC	3 cut(s)	240, 453, 718
LguI	GCTCTTC	1 cut(s)	438
LmnI	GCTCC	1 cut(s)	407
Lsp1109I	GCAGC	3 cut(s)	133, 886, 923
LweI	GCATC	2 cut(s)	133, 763
MaeI	CTAG	1 cut(s)	117
MaeII	ACGT	1 cut(s)	68
MaeIII	GTNAC	1 cut(s)	227
MalI	GATC	3 cut(s)	242, 455, 720
MboI	GATC	3 cut(s)	240, 453, 718
MboII	GAAGA	4 cut(s)	76, 455, 617, 937
MhlI	GDGCHC	3 cut(s)	98, 511, 714
MluCI	AATT	3 cut(s)	303, 880, 916
Mly113I	GGCGCC	1 cut(s)	474
MmeI	TCCRAC	1 cut(s)	613
MnlI	CCTC	7 cut(s)	16, 290, 334, 421, 629, 700, 775
MroNI	GCCGGC	1 cut(s)	170
MseI	TTAA	4 cut(s)	131, 389, 552, 570
MslI	CAYNNNNRTG	2 cut(s)	599, 683
MspA1I	CMGCKG	1 cut(s)	152
MspI	CCGG	2 cut(s)	171, 252
Mva1269I	GAATGC	1 cut(s)	434
MwoI	GCNNNNNNNGC	4 cut(s)	341, 407, 574, 908
NaeI	GCCGGC	1 cut(s)	172
NarI	GGCGCC	1 cut(s)	474
NcoI	CCATGG	1 cut(s)	267
NdeI	CATATG	1 cut(s)	337
NdeII	GATC	3 cut(s)	240, 453, 718
NgoMIV	GCCGGC	1 cut(s)	170
NlaIII	CATG	6 cut(s)	202, 271, 292, 563, 598, 604
NlaIV	GGNNCC	3 cut(s)	409, 475, 848
NmeAIII	GCCGAG	1 cut(s)	370
NspI	RCATGY	1 cut(s)	202
OliI	CACNNNNGTG	1 cut(s)	683
PaeI	GCATGC	1 cut(s)	202
PciSI	GCTCTTC	1 cut(s)	438
PcsI	WCGNNNNNNNCGW	1 cut(s)	636
PctI	GAATGC	1 cut(s)	434
PdiI	GCCGGC	1 cut(s)	172
PfeI	GAWTC	2 cut(s)	25, 370
PflFI	GACNNNGTC	1 cut(s)	289
PflMI	CCANNNNNTGG	1 cut(s)	606
PkrI	GCNGC	4 cut(s)	148, 151, 901, 913
PluTI	GGCGCC	1 cut(s)	477
PspN4I	GGNNCC	3 cut(s)	409, 475, 848
PstI	CTGCAG	2 cut(s)	63, 913
PstNI	CAGNNNCTG	1 cut(s)	146
PsyI	GACNNNGTC	1 cut(s)	289
RsaI	GTAC	2 cut(s)	363, 691
RsaNI	GTAC	2 cut(s)	362, 690
RseI	CAYNNNNRTG	2 cut(s)	599, 683
SapI	GCTCTTC	1 cut(s)	438
SaqAI	TTAA	4 cut(s)	131, 389, 552, 570
SatI	GCNGC	4 cut(s)	147, 150, 900, 912
Sau3AI	GATC	3 cut(s)	240, 453, 718
SduI	GDGCHC	3 cut(s)	98, 511, 714
SetI	ASST	5 cut(s)	71, 403, 543, 841, 916
SfaNI	GCATC	2 cut(s)	133, 763
SfcI	CTRYAG	2 cut(s)	59, 909
SfoI	GGCGCC	1 cut(s)	475
SmiMI	CAYNNNNRTG	2 cut(s)	599, 683
SmlI	CTYRAG	1 cut(s)	779
SmoI	CTYRAG	1 cut(s)	779
SpeI	ACTAGT	1 cut(s)	116
SphI	GCATGC	1 cut(s)	202
Sse9I	AATT	3 cut(s)	303, 880, 916
SsiI	CCGC	1 cut(s)	150
SspDI	GGCGCC	1 cut(s)	473
SspI	AATATT	1 cut(s)	942
SspMI	CTAG	1 cut(s)	117
StyI	CCWWGG	1 cut(s)	267
TaaI	ACNGT	4 cut(s)	220, 589, 621, 859
TaiI	ACGT	1 cut(s)	71
TasI	AATT	3 cut(s)	303, 880, 916
TatI	WGTACW	1 cut(s)	361
TauI	GCSGC	1 cut(s)	152
TfiI	GAWTC	2 cut(s)	25, 370
Tru1I	TTAA	4 cut(s)	131, 389, 552, 570
Tru9I	TTAA	4 cut(s)	131, 389, 552, 570
TscAI	CASTG	5 cut(s)	183, 198, 509, 685, 808
TseI	GCWGC	3 cut(s)	146, 899, 911
TspDTI	ATGAA	1 cut(s)	500
TspGWI	ACGGA	2 cut(s)	707, 938
TspRI	CASTG	5 cut(s)	183, 198, 509, 685, 808
Tth111I	GACNNNGTC	1 cut(s)	289
Van91I	CCANNNNNTGG	1 cut(s)	606
XceI	RCATGY	1 cut(s)	202
XspI	CTAG	1 cut(s)	117

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.