Prupe.6G272400_v2.0.a1

Protein NRT1 PTR FAMILY

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0001179
Physical Location & Seq
Forward (+)
25775870 .. 25778248
2379 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G272400.1

Sequence Viewer

Length: 1632 bp
ATGGCACCGTCTAAGCTGAAGGCCGGTTTTGTGGTTTGGCCGAATCTACTCACCACATTGATCATGTCGATAATGGCTTCATACTTAACCGGTGCATGGGAGCTCAGTATCACACACGCTGCTGCAATTGTCAATTTGTATTCGGGTGTGGTGGGCATAATGCCAGTGGGCATGATATGTATAGTCTACATGACTGGTTACATGGGTAGCTATTGGATGATCTTGCTCTCCAGATTTGCCTACACTGCTGGCTTGGTTCTTTTGGCGATGTCAACACCTCCAGTCCTTGCTGGGGCAACAGGCACTTGCAGCTCATATAAGGCCGAGTGCATTGGCCAAGTACAAAAGGTTCTGTTTTACACGTCATTACCTCTAATAGCTGTGGGTGTGTCTGCTTACTTGGGCTCTGCGCTGACATTCATCGATGAGTTGTTGCCCCAAACAAATCCTGAACAGTTGCCGCCACCAGAATCTGAGCAGTTGCCGCCACCACCAGAATCTGAGCAGTTGCCGCCACCACCAGAATCTGAGCAGTTGCCGCCACCACCAGAACCTGAGAAGTTACCGCCTCCAGCACCAGCAGCTGAGCAGTTGCAGCCACCAGCATCTAAGAAGTTGCCACCAAAAGAAGTTGACAAGCAGATTACTCCAGAATCAAATGGCACTAGTTGGGCCAAATTTTTTAAAAGCGAGTGGTTCTTTGGTGTGATATCAATGATCTTCTTCCCTGGAGCTGCACTTCTGGCGATTGGTTATATAAATCCTTGGTCGATTAAGTTTGGCATAGGAGCCATATGCACAGTGGTATCAACAATTATCTTCTTGTGTGGTTTACGTTCATTCCCACGTGGACGTGGAGCTGGACAAAAACCGATCAGTCTTACCAAAATGTTTAGGAAACAAGATGCCAAAAGCATCCTACGCCTGATGCCTACATGCATGACCTGTATCCTGACAGGTATTGTAGTTTCTATCGGAAATACTTACTTCATTGAACAAGCAACCGACATGAATCCCCATGTTGGGCGCTTATTGGTTCCTATTATTGTCCTTCCAATTTGTTTCCAAGGGTATCTGAAAGCGTATTTGGCGAACCAAATAAAATGGTGTGCTGCGGATCCCAGATTTGGAATTGCTGTGTCAAAGATAATTGCAACTCTGTGTTGTATCACAGCTGCAAAAGTGGAGACCCGAAGATTAGGTGTGGTGAGGAGTGAGGGTTTGATCGAGGACGACGACGAGGACACGAAAAAAATTTCCATGACCATGTTTTGGTTGGTTCCACAGTTTCTTCTTCTCGGATTAGCTGAAGAGCTTTCAGAGAAGAGCATTGTTTGTTTCTTCACCGATAAGCTGGAAATTAAAACCCCGGAGGAAGACGAGGCAACAAAAGAGTCCAAGAATATGTACATGAAAATATTTGCTCAAGCGGTTAGTGGAGTGGGAATTATATGTGGTGTGTTGTCAGTTTATGCAGTGGGTGAGACAAGTGCAAGGGTGGGAGGGTCCAGTTGGTTCCAGTTCACGCTAAACAGGAGTCGTTTGGACAATTACTATTGGACCTTGGCTGCATTGACTGCAATTAATCTTGTGCTGGATCTTTTGGTGAGATGTGTAGTCTTTAGGGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PTR2

Protein Analysis

544

Amino Acids

59.39

Weight (kDa)

6.76

Isoelectric Point (pI)

44.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 4
AccB7I CCANNNNNTGG 1 cut(s) 1272
AccI GTMKAC 1 cut(s) 186
AciI CCGC 7 cut(s) 461, 485, 512, 539, 566, 1115, 1430
AclWI GGATC 3 cut(s) 1112, 1125, 1605
AcoI YGGCCR 2 cut(s) 38, 334
AcsI RAATTY 2 cut(s) 677, 1254
AcuI CTGAAG 2 cut(s) 38, 1329
AcvI CACGTG 1 cut(s) 848
AfaI GTAC 2 cut(s) 342, 1409
AfiI CCNNNNNNNGG 6 cut(s) 96, 292, 1022, 1023, 1127, 1272
AflIII ACRYGT 1 cut(s) 360
AgeI ACCGGT 1 cut(s) 89
AgsI TTSAA 1 cut(s) 995
AhlI ACTAGT 1 cut(s) 665
AjiI CACGTC 2 cut(s) 363, 854
AjnI CCWGG 1 cut(s) 727
AjuI GAANNNNNNNTTGG 2 cut(s) 1070, 1102
Alw21I GWGCWC 1 cut(s) 105
Alw26I GTCTC 2 cut(s) 1181, 1478
AlwI GGATC 3 cut(s) 1112, 1125, 1605
AlwNI CAGNNNCTG 5 cut(s) 473, 500, 527, 554, 584
AoxI GGCC 5 cut(s) 21, 38, 321, 334, 672
ApeKI GCWGC 9 cut(s) 119, 122, 309, 581, 595, 734, 1112, 1175, 1568
ApoI RAATTY 2 cut(s) 677, 1254
AseI ATTAAT 1 cut(s) 1584
AsiGI ACCGGT 1 cut(s) 89
AspLEI GCGC 2 cut(s) 412, 1029
AspS9I GGNCC 3 cut(s) 672, 1506, 1560
AsuC2I CCSGG 1 cut(s) 1370
AsuHPI GGTGA 5 cut(s) 43, 1219, 1336, 1493, 1618
AvaII GGWCC 2 cut(s) 1506, 1560
BaeI ACNNNNGTAYC 2 cut(s) 789, 822
BalI TGGCCA 1 cut(s) 336
BamHI GGATCC 1 cut(s) 1117
BanI GGYRCC 1 cut(s) 4
BanII GRGCYC 2 cut(s) 105, 407
BbrPI CACGTG 1 cut(s) 848
BbsI GAAGAC 1 cut(s) 1383
Bbv12I GWGCWC 1 cut(s) 105
BbvI GCAGC 9 cut(s) 106, 109, 321, 593, 607, 721, 1099, 1162, 1555
BciT130I CCWGG 1 cut(s) 729
BciVI GTATCC 1 cut(s) 959
BclI TGATCA 1 cut(s) 60
BcnI CCSGG 1 cut(s) 1370
BcoDI GTCTC 2 cut(s) 1181, 1478
BcuI ACTAGT 1 cut(s) 665
BfaI CTAG 1 cut(s) 666
BfoI RGCGCY 1 cut(s) 1030
BfuI GTATCC 1 cut(s) 959
BlpI GCTNAGC 1 cut(s) 585
Bme1390I CCNGG 2 cut(s) 729, 1370
Bme18I GGWCC 2 cut(s) 1506, 1560
BmgBI CACGTC 2 cut(s) 363, 854
BmgT120I GGNCC 3 cut(s) 672, 1506, 1560
BmiI GGNNCC 7 cut(s) 6, 790, 1038, 1119, 1281, 1507, 1517
BmrFI CCNGG 2 cut(s) 729, 1370
BmsI GCATC 4 cut(s) 614, 895, 918, 924
BpiI GAAGAC 1 cut(s) 1383
BpmI CTGGAG 5 cut(s) 214, 264, 555, 633, 750
Bpu1102I GCTNAGC 1 cut(s) 585
BpuEI CTTGAG 1 cut(s) 1410
BpuMI CCSGG 1 cut(s) 1370
Bsa29I ATCGAT 1 cut(s) 423
BsaAI YACGTR 1 cut(s) 848
BsaI GGTCTC 1 cut(s) 1181
BsaJI CCNNGG 5 cut(s) 727, 764, 1066, 1368, 1563
BsaWI WCCGGW 1 cut(s) 89
BsaXI ACNNNNNCTCC 2 cut(s) 1204, 1234
Bsc4I CCNNNNNNNGG 6 cut(s) 96, 292, 1022, 1023, 1127, 1272
Bse118I RCCGGY 2 cut(s) 23, 89
Bse1I ACTGG 5 cut(s) 164, 199, 281, 1509, 1519
BseBI CCWGG 1 cut(s) 729
BseCI ATCGAT 1 cut(s) 423
BseDI CCNNGG 5 cut(s) 727, 764, 1066, 1368, 1563
BseGI GGATG 2 cut(s) 222, 915
BseLI CCNNNNNNNGG 6 cut(s) 96, 292, 1022, 1023, 1127, 1272
BseMII CTCAG 6 cut(s) 118, 465, 492, 519, 546, 576
BseNI ACTGG 5 cut(s) 164, 199, 281, 1509, 1519
BseRI GAGGAG 1 cut(s) 1225
BseXI GCAGC 9 cut(s) 106, 109, 321, 593, 607, 721, 1099, 1162, 1555
BseYI CCCAGC 1 cut(s) 290
BsgI GTGCAG 1 cut(s) 720
BshFI GGCC 5 cut(s) 23, 40, 323, 336, 674
BshNI GGYRCC 1 cut(s) 4
BshTI ACCGGT 1 cut(s) 89
BshVI ATCGAT 1 cut(s) 423
BsiHKAI GWGCWC 1 cut(s) 105
BsiSI CCGG 3 cut(s) 24, 90, 1370
BslI CCNNNNNNNGG 6 cut(s) 96, 292, 1022, 1023, 1127, 1272
BsmAI GTCTC 2 cut(s) 1181, 1478
BsnI GGCC 5 cut(s) 23, 40, 323, 336, 674
Bso31I GGTCTC 1 cut(s) 1181
Bsp1286I GDGCHC 2 cut(s) 105, 407
Bsp1407I TGTACA 1 cut(s) 1407
Bsp143I GATC 7 cut(s) 60, 219, 717, 873, 1117, 1224, 1597
Bsp1720I GCTNAGC 1 cut(s) 585
BspACI CCGC 7 cut(s) 461, 485, 512, 539, 566, 1115, 1430
BspANI GGCC 5 cut(s) 23, 40, 323, 336, 674
BspCNI CTCAG 6 cut(s) 117, 466, 493, 520, 547, 577
BspDI ATCGAT 1 cut(s) 423
BspLI GGNNCC 7 cut(s) 6, 790, 1038, 1119, 1281, 1507, 1517
BspPI GGATC 3 cut(s) 1112, 1125, 1605
BspQI GCTCTTC 2 cut(s) 1305, 1319
BspT107I GGYRCC 1 cut(s) 4
BspTNI GGTCTC 1 cut(s) 1181
BsrFI RCCGGY 2 cut(s) 23, 89
BsrGI TGTACA 1 cut(s) 1407
BsrI ACTGG 5 cut(s) 164, 199, 281, 1509, 1519
BssAI RCCGGY 2 cut(s) 23, 89
BssECI CCNNGG 5 cut(s) 727, 764, 1066, 1368, 1563
BssMI GATC 7 cut(s) 60, 219, 717, 873, 1117, 1224, 1597
BssT1I CCWWGG 3 cut(s) 764, 1066, 1563
Bst2UI CCWGG 1 cut(s) 729
Bst4CI ACNGT 4 cut(s) 9, 456, 802, 1287
Bst6I CTCTTC 2 cut(s) 1305, 1319
BstAPI GCANNNNNTGC 1 cut(s) 1577
BstAUI TGTACA 1 cut(s) 1407
BstBAI YACGTR 1 cut(s) 848
BstC8I GCNNGC 1 cut(s) 250
BstDEI CTNAG 8 cut(s) 12, 104, 474, 501, 528, 555, 585, 609
BstF5I GGATG 2 cut(s) 222, 915
BstH2I RGCGCY 1 cut(s) 1030
BstHHI GCGC 2 cut(s) 412, 1029
BstKTI GATC 7 cut(s) 63, 222, 720, 876, 1120, 1227, 1600
BstMAI GTCTC 2 cut(s) 1181, 1478
BstMBI GATC 7 cut(s) 60, 219, 717, 873, 1117, 1224, 1597
BstNI CCWGG 1 cut(s) 729
BstNSI RCATGY 1 cut(s) 939
BstSCI CCNGG 2 cut(s) 727, 1368
BstV1I GCAGC 9 cut(s) 106, 109, 321, 593, 607, 721, 1099, 1162, 1555
BstV2I GAAGAC 1 cut(s) 1383
BstX2I RGATCY 2 cut(s) 1117, 1597
BstYI RGATCY 2 cut(s) 1117, 1597
Bsu15I ATCGAT 1 cut(s) 423
BsuI GTATCC 1 cut(s) 959
BsuRI GGCC 5 cut(s) 23, 40, 323, 336, 674
BsuTUI ATCGAT 1 cut(s) 423
BtgZI GCGATG 1 cut(s) 281
BtrI CACGTC 2 cut(s) 363, 854
BtsCI GGATG 2 cut(s) 222, 915
BtsI GCAGTG 2 cut(s) 243, 1482
BtsIMutI CAGTG 4 cut(s) 171, 243, 807, 1482
Cac8I GCNNGC 1 cut(s) 250
CaiI CAGNNNCTG 5 cut(s) 473, 500, 527, 554, 584
CfoI GCGC 2 cut(s) 412, 1029
Cfr10I RCCGGY 2 cut(s) 23, 89
Cfr13I GGNCC 3 cut(s) 672, 1506, 1560
ClaI ATCGAT 1 cut(s) 423
Csp6I GTAC 2 cut(s) 341, 1408
CspAI ACCGGT 1 cut(s) 89
CviQI GTAC 2 cut(s) 341, 1408
DdeI CTNAG 8 cut(s) 12, 104, 474, 501, 528, 555, 585, 609
DpnI GATC 7 cut(s) 62, 221, 719, 875, 1119, 1226, 1599
DpnII GATC 7 cut(s) 60, 219, 717, 873, 1117, 1224, 1597
DraI TTTAAA 1 cut(s) 685
EaeI YGGCCR 2 cut(s) 38, 334
Eam1104I CTCTTC 2 cut(s) 1305, 1319
EarI CTCTTC 2 cut(s) 1305, 1319
Ecl136II GAGCTC 1 cut(s) 103
Eco130I CCWWGG 3 cut(s) 764, 1066, 1563
Eco24I GRGCYC 2 cut(s) 105, 407
Eco31I GGTCTC 1 cut(s) 1181
Eco32I GATATC 1 cut(s) 711
Eco47I GGWCC 2 cut(s) 1506, 1560
Eco53kI GAGCTC 1 cut(s) 103
Eco57I CTGAAG 2 cut(s) 38, 1329
Eco72I CACGTG 1 cut(s) 848
EcoICRI GAGCTC 1 cut(s) 103
EcoRII CCWGG 1 cut(s) 727
EcoRV GATATC 1 cut(s) 711
EcoT14I CCWWGG 3 cut(s) 764, 1066, 1563
EcoT22I ATGCAT 1 cut(s) 941
EcoT38I GRGCYC 2 cut(s) 105, 407
ErhI CCWWGG 3 cut(s) 764, 1066, 1563
FauNDI CATATG 1 cut(s) 794
FbaI TGATCA 1 cut(s) 60
FblI GTMKAC 1 cut(s) 186
FokI GGATG 2 cut(s) 229, 902
FriOI GRGCYC 2 cut(s) 105, 407
FspBI CTAG 1 cut(s) 666
GlaI GCGC 2 cut(s) 411, 1028
GsaI CCCAGC 1 cut(s) 294
GsuI CTGGAG 5 cut(s) 214, 264, 555, 633, 750
HaeII RGCGCY 1 cut(s) 1030
HaeIII GGCC 5 cut(s) 23, 40, 323, 336, 674
HapII CCGG 3 cut(s) 24, 90, 1370
HhaI GCGC 2 cut(s) 412, 1029
Hin6I GCGC 2 cut(s) 410, 1027
HinP1I GCGC 2 cut(s) 410, 1027
HincII GTYRAC 2 cut(s) 273, 634
HindII GTYRAC 2 cut(s) 273, 634
HinfI GANTC 8 cut(s) 43, 470, 497, 524, 653, 1012, 1394, 1537
HpaII CCGG 3 cut(s) 24, 90, 1370
HphI GGTGA 5 cut(s) 43, 1219, 1336, 1493, 1618
Hpy166II GTNNAC 6 cut(s) 187, 273, 634, 833, 851, 1524
Hpy188I TCNGA 7 cut(s) 475, 502, 529, 977, 1077, 1301, 1321
Hpy188III TCNNGA 4 cut(s) 231, 449, 650, 952
Hpy8I GTNNAC 6 cut(s) 187, 273, 634, 833, 851, 1524
Hpy99I CGWCG 2 cut(s) 1238, 1241
HpyAV CCTTC 2 cut(s) 13, 1061
HpyCH4III ACNGT 4 cut(s) 9, 456, 802, 1287
HpyCH4IV ACGT 4 cut(s) 362, 835, 847, 853
HpyF3I CTNAG 8 cut(s) 12, 104, 474, 501, 528, 555, 585, 609
HpySE526I ACGT 4 cut(s) 362, 835, 847, 853
HspAI GCGC 2 cut(s) 410, 1027
Ksp22I TGATCA 1 cut(s) 60
Kzo9I GATC 7 cut(s) 60, 219, 717, 873, 1117, 1224, 1597
LguI GCTCTTC 2 cut(s) 1305, 1319
LmnI GCTCC 4 cut(s) 100, 731, 788, 857
Lsp1109I GCAGC 9 cut(s) 106, 109, 321, 593, 607, 721, 1099, 1162, 1555
LweI GCATC 4 cut(s) 614, 895, 918, 924
MaeI CTAG 1 cut(s) 666
MaeII ACGT 4 cut(s) 362, 835, 847, 853
MaeIII GTNAC 2 cut(s) 197, 561
MalI GATC 7 cut(s) 62, 221, 719, 875, 1119, 1226, 1599
MboI GATC 7 cut(s) 60, 219, 717, 873, 1117, 1224, 1597
MfeI CAATTG 1 cut(s) 126
MflI RGATCY 2 cut(s) 1117, 1597
MhlI GDGCHC 2 cut(s) 105, 407
MlsI TGGCCA 1 cut(s) 336
MluNI TGGCCA 1 cut(s) 336
MlyI GAGTC 2 cut(s) 1403, 1546
Mox20I TGGCCA 1 cut(s) 336
Mph1103I ATGCAT 1 cut(s) 941
MscI TGGCCA 1 cut(s) 336
MseI TTAA 5 cut(s) 86, 684, 774, 1362, 1584
MslI CAYNNNNRTG 1 cut(s) 1265
Msp20I TGGCCA 1 cut(s) 336
MspA1I CMGCKG 2 cut(s) 584, 1175
MspI CCGG 3 cut(s) 24, 90, 1370
MspR9I CCNGG 2 cut(s) 729, 1370
MunI CAATTG 1 cut(s) 126
MvaI CCWGG 1 cut(s) 729
NciI CCSGG 1 cut(s) 1370
NdeI CATATG 1 cut(s) 794
NdeII GATC 7 cut(s) 60, 219, 717, 873, 1117, 1224, 1597
NlaIV GGNNCC 7 cut(s) 6, 790, 1038, 1119, 1281, 1507, 1517
NmeAIII GCCGAG 1 cut(s) 349
NsiI ATGCAT 1 cut(s) 941
NspI RCATGY 1 cut(s) 939
PciSI GCTCTTC 2 cut(s) 1305, 1319
PcsI WCGNNNNNNNCGW 1 cut(s) 1233
PfeI GAWTC 6 cut(s) 43, 470, 497, 524, 653, 1012
PflMI CCANNNNNTGG 1 cut(s) 1272
PinAI ACCGGT 1 cut(s) 89
PleI GAGTC 2 cut(s) 1402, 1545
PmaCI CACGTG 1 cut(s) 848
PmlI CACGTG 1 cut(s) 848
PpsI GAGTC 2 cut(s) 1402, 1545
Ppu21I YACGTR 1 cut(s) 848
PshBI ATTAAT 1 cut(s) 1584
Psp124BI GAGCTC 1 cut(s) 105
Psp6I CCWGG 1 cut(s) 727
PspCI CACGTG 1 cut(s) 848
PspFI CCCAGC 1 cut(s) 290
PspGI CCWGG 1 cut(s) 727
PspN4I GGNNCC 7 cut(s) 6, 790, 1038, 1119, 1281, 1507, 1517
PspPI GGNCC 3 cut(s) 672, 1506, 1560
PsrI GAACNNNNNNTAC 2 cut(s) 333, 365
PstNI CAGNNNCTG 5 cut(s) 473, 500, 527, 554, 584
PsuI RGATCY 2 cut(s) 1117, 1597
PvuII CAGCTG 2 cut(s) 584, 1175
RsaI GTAC 2 cut(s) 342, 1409
RsaNI GTAC 2 cut(s) 341, 1408
RseI CAYNNNNRTG 1 cut(s) 1265
SacI GAGCTC 1 cut(s) 105
SapI GCTCTTC 2 cut(s) 1305, 1319
SaqAI TTAA 5 cut(s) 86, 684, 774, 1362, 1584
Sau3AI GATC 7 cut(s) 60, 219, 717, 873, 1117, 1224, 1597
Sau96I GGNCC 3 cut(s) 672, 1506, 1560
SchI GAGTC 2 cut(s) 1403, 1546
ScrFI CCNGG 2 cut(s) 729, 1370
SduI GDGCHC 2 cut(s) 105, 407
SfaNI GCATC 4 cut(s) 614, 895, 918, 924
SinI GGWCC 2 cut(s) 1506, 1560
SmiMI CAYNNNNRTG 1 cut(s) 1265
SmlI CTYRAG 1 cut(s) 1425
SmoI CTYRAG 1 cut(s) 1425
SpeI ACTAGT 1 cut(s) 665
SsiI CCGC 7 cut(s) 461, 485, 512, 539, 566, 1115, 1430
SspI AATATT 1 cut(s) 1419
SspMI CTAG 1 cut(s) 666
SstI GAGCTC 1 cut(s) 105
StyD4I CCNGG 2 cut(s) 727, 1368
StyI CCWWGG 3 cut(s) 764, 1066, 1563
TaaI ACNGT 4 cut(s) 9, 456, 802, 1287
TaiI ACGT 4 cut(s) 365, 838, 850, 856
TaqI TCGA 4 cut(s) 68, 423, 770, 1227
TatI WGTACW 2 cut(s) 340, 1407
TauI GCSGC 4 cut(s) 463, 487, 514, 541
TfiI GAWTC 6 cut(s) 43, 470, 497, 524, 653, 1012
Tru1I TTAA 5 cut(s) 86, 684, 774, 1362, 1584
Tru9I TTAA 5 cut(s) 86, 684, 774, 1362, 1584
TscAI CASTG 4 cut(s) 171, 250, 807, 1482
TseI GCWGC 9 cut(s) 119, 122, 309, 581, 595, 734, 1112, 1175, 1568
TspDTI ATGAA 6 cut(s) 69, 409, 828, 979, 1025, 1427
TspRI CASTG 4 cut(s) 171, 250, 807, 1482
Van91I CCANNNNNTGG 1 cut(s) 1272
VpaK11BI GGWCC 2 cut(s) 1506, 1560
VspI ATTAAT 1 cut(s) 1584
XapI RAATTY 2 cut(s) 677, 1254
XceI RCATGY 1 cut(s) 939
XcmI CCANNNNNNNNNTGG 2 cut(s) 799, 1273
XmiI GTMKAC 1 cut(s) 186
XspI CTAG 1 cut(s) 666
Zsp2I ATGCAT 1 cut(s) 941
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.