Rh2DG376900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0001179
Physical Location & Seq
Forward (+)
54070915 .. 54097060
26146 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG376900.1

Sequence Viewer

Length: 384 bp
ATGAAAGCAACTAAGGCGTGCTTGTTTTTAGAAAAGGATCATGATTTAGGTCTTCACCTCATGCCCCCATGTGGATTAGATGTACCGAGTGGGCCCCATGTGGGTCCAACGACACTAGGCAACGAAGAGAACCTTTTAAGGTTATCAAAAGACCAAAAGCAGAAGAATATTGCAGCATGCACATCGAAGTCTAAACAATCCTTGTATTTACAAAGAGGATGGGTTGGGTTGGCGGCGGTGGAGGGTGATAGGAGAAGTGGAGTTCGGCAGGGATCGGGAGTTGGGGTTGGCGGCGAGGTCGAGGCAGGAGATGAAGGACTTGAGGGAGGGGTCGCGGTCGATGAAGGCGGGGAGAAGGAGAGGAGAGGATATCGGTGGGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

127

Amino Acids

13.47

Weight (kDa)

6.3

Isoelectric Point (pI)

56.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 335
AciI CCGC 5 cut(s) 233, 236, 291, 335, 348
AclWI GGATC 2 cut(s) 45, 280
AfaI GTAC 1 cut(s) 84
AfiI CCNNNNNNNGG 2 cut(s) 71, 101
AlwI GGATC 2 cut(s) 45, 280
AoxI GGCC 1 cut(s) 92
ApaI GGGCCC 1 cut(s) 96
ApeKI GCWGC 1 cut(s) 173
AspS9I GGNCC 3 cut(s) 92, 93, 104
AsuHPI GGTGA 2 cut(s) 47, 257
AvaII GGWCC 1 cut(s) 104
BaeGI GKGCMC 1 cut(s) 96
BanII GRGCYC 1 cut(s) 96
BbsI GAAGAC 1 cut(s) 44
BbvI GCAGC 1 cut(s) 185
BccI CCATC 1 cut(s) 213
BcgI CGANNNNNNTGC 2 cut(s) 165, 199
BfaI CTAG 1 cut(s) 116
BisI GCNGC 3 cut(s) 174, 234, 292
BlsI GCNGC 3 cut(s) 175, 235, 293
Bme18I GGWCC 1 cut(s) 104
BmgT120I GGNCC 3 cut(s) 92, 93, 104
BmiI GGNNCC 3 cut(s) 94, 95, 105
BpiI GAAGAC 1 cut(s) 44
BpuEI CTTGAG 1 cut(s) 341
BsaXI ACNNNNNCTCC 2 cut(s) 270, 300
Bsc4I CCNNNNNNNGG 2 cut(s) 71, 101
BseGI GGATG 1 cut(s) 224
BseLI CCNNNNNNNGG 2 cut(s) 71, 101
BseRI GAGGAG 1 cut(s) 376
BseSI GKGCMC 1 cut(s) 96
BseXI GCAGC 1 cut(s) 185
Bsh1236I CGCG 1 cut(s) 335
Bsh1285I CGRYCG 1 cut(s) 339
BshFI GGCC 1 cut(s) 94
BsiEI CGRYCG 1 cut(s) 339
BslI CCNNNNNNNGG 2 cut(s) 71, 101
BsnI GGCC 1 cut(s) 94
Bsp120I GGGCCC 1 cut(s) 92
Bsp1286I GDGCHC 1 cut(s) 96
Bsp143I GATC 2 cut(s) 37, 272
BspACI CCGC 5 cut(s) 233, 236, 291, 335, 348
BspANI GGCC 1 cut(s) 94
BspFNI CGCG 1 cut(s) 335
BspHI TCATGA 1 cut(s) 40
BspLI GGNNCC 3 cut(s) 94, 95, 105
BspPI GGATC 2 cut(s) 45, 280
BssMI GATC 2 cut(s) 37, 272
Bst6I CTCTTC 1 cut(s) 120
BstC8I GCNNGC 2 cut(s) 19, 178
BstDEI CTNAG 1 cut(s) 12
BstF5I GGATG 1 cut(s) 224
BstFNI CGCG 1 cut(s) 335
BstKTI GATC 2 cut(s) 40, 275
BstMBI GATC 2 cut(s) 37, 272
BstMCI CGRYCG 1 cut(s) 339
BstMWI GCNNNNNNNGC 1 cut(s) 14
BstNSI RCATGY 1 cut(s) 180
BstSLI GKGCMC 1 cut(s) 96
BstUI CGCG 1 cut(s) 335
BstV1I GCAGC 1 cut(s) 185
BstV2I GAAGAC 1 cut(s) 44
BsuRI GGCC 1 cut(s) 94
BtsCI GGATG 1 cut(s) 224
Cac8I GCNNGC 2 cut(s) 19, 178
CciI TCATGA 1 cut(s) 40
Cfr13I GGNCC 3 cut(s) 92, 93, 104
Csp6I GTAC 1 cut(s) 83
CviAII CATG 5 cut(s) 41, 61, 69, 98, 177
CviJI RGCY 1 cut(s) 94
CviKI_1 RGCY 1 cut(s) 94
CviQI GTAC 1 cut(s) 83
DdeI CTNAG 1 cut(s) 12
DpnI GATC 2 cut(s) 39, 274
DpnII GATC 2 cut(s) 37, 272
Eam1104I CTCTTC 1 cut(s) 120
EarI CTCTTC 1 cut(s) 120
Eco24I GRGCYC 1 cut(s) 96
Eco32I GATATC 1 cut(s) 371
Eco47I GGWCC 1 cut(s) 104
EcoO109I RGGNCCY 1 cut(s) 93
EcoRV GATATC 1 cut(s) 371
EcoT38I GRGCYC 1 cut(s) 96
FaeI CATG 5 cut(s) 44, 64, 72, 101, 180
FaiI YATR 5 cut(s) 42, 62, 70, 99, 178
FalI AAGNNNNNCTT 3 cut(s) 37, 117, 149
FatI CATG 5 cut(s) 40, 60, 68, 97, 176
FauI CCCGC 1 cut(s) 341
Fnu4HI GCNGC 3 cut(s) 174, 234, 292
FokI GGATG 1 cut(s) 231
FriOI GRGCYC 1 cut(s) 96
Fsp4HI GCNGC 3 cut(s) 174, 234, 292
FspBI CTAG 1 cut(s) 116
GluI GCNGC 3 cut(s) 174, 234, 292
HaeIII GGCC 1 cut(s) 94
Hin1II CATG 5 cut(s) 44, 64, 72, 101, 180
HphI GGTGA 2 cut(s) 47, 257
Hpy188III TCNNGA 2 cut(s) 41, 276
HpyAV CCTTC 3 cut(s) 308, 338, 349
HpyCH4V TGCA 2 cut(s) 173, 180
HpyF10VI GCNNNNNNNGC 1 cut(s) 14
HpyF3I CTNAG 1 cut(s) 12
Hsp92II CATG 5 cut(s) 44, 64, 72, 101, 180
Kzo9I GATC 2 cut(s) 37, 272
LpnPI CCDG 2 cut(s) 254, 291
Lsp1109I GCAGC 1 cut(s) 185
MaeI CTAG 1 cut(s) 116
MalI GATC 2 cut(s) 39, 274
MboI GATC 2 cut(s) 37, 272
MboII GAAGA 3 cut(s) 44, 137, 175
MhlI GDGCHC 1 cut(s) 96
MmeI TCCRAC 1 cut(s) 131
MnlI CCTC 9 cut(s) 68, 209, 235, 289, 295, 316, 320, 354, 359
MseI TTAA 1 cut(s) 137
MvnI CGCG 1 cut(s) 335
MwoI GCNNNNNNNGC 1 cut(s) 14
NdeII GATC 2 cut(s) 37, 272
NlaIII CATG 5 cut(s) 44, 64, 72, 101, 180
NlaIV GGNNCC 3 cut(s) 94, 95, 105
NspI RCATGY 1 cut(s) 180
PaeI GCATGC 1 cut(s) 180
PagI TCATGA 1 cut(s) 40
PkrI GCNGC 3 cut(s) 175, 235, 293
PspN4I GGNNCC 3 cut(s) 94, 95, 105
PspOMI GGGCCC 1 cut(s) 92
PspPI GGNCC 3 cut(s) 92, 93, 104
RsaI GTAC 1 cut(s) 84
RsaNI GTAC 1 cut(s) 83
SaqAI TTAA 1 cut(s) 137
SatI GCNGC 3 cut(s) 174, 234, 292
Sau3AI GATC 2 cut(s) 37, 272
Sau96I GGNCC 3 cut(s) 92, 93, 104
SduI GDGCHC 1 cut(s) 96
SetI ASST 5 cut(s) 52, 60, 135, 143, 300
SinI GGWCC 1 cut(s) 104
SmlI CTYRAG 1 cut(s) 320
SmoI CTYRAG 1 cut(s) 320
SphI GCATGC 1 cut(s) 180
SsiI CCGC 5 cut(s) 233, 236, 291, 335, 348
SspI AATATT 1 cut(s) 169
SspMI CTAG 1 cut(s) 116
TaqI TCGA 3 cut(s) 185, 300, 339
TauI GCSGC 2 cut(s) 236, 294
Tru1I TTAA 1 cut(s) 137
Tru9I TTAA 1 cut(s) 137
TseI GCWGC 1 cut(s) 173
TspDTI ATGAA 3 cut(s) 17, 327, 357
VpaK11BI GGWCC 1 cut(s) 104
XceI RCATGY 1 cut(s) 180
XspI CTAG 1 cut(s) 116
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.