Rorug05G0338800

POT family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Forward (+)
41150236 .. 41150565
330 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0338800.1

Sequence Viewer

Length: 330 bp
ATGTACTTTCCTACATGGGTTTCTGATCAATTGAATCAAGGGAAGGAGATCGAAATAGGAGATGCCACTGAAGATGAAATGAAAATCATAAAGAAGATGATCATAGTGGCATTGTGGTGCATACAAATGAAGCCTATTGAACGCCCTTCAATGAGCAAAGTAGTAGAAATGCTTGAAGCAGAAATCGAGAGCCTCCAAATACCTCCAAAGCCCTTCTTATATCCACCGCAAATACCAGTAGATGATGTTGAGGACAATTTAAGTACTACTTGTGCATCAAGAATGACAGAATCTACAGAGATCATCAATTTGATTGCAGATGCAAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

109

Amino Acids

12.4

Weight (kDa)

4.27

Isoelectric Point (pI)

61.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 227
AcuI CTGAAG 1 cut(s) 90
AfaI GTAC 2 cut(s) 5, 265
AgsI TTSAA 4 cut(s) 34, 140, 150, 176
BclI TGATCA 2 cut(s) 25, 99
BfmI CTRYAG 1 cut(s) 294
BmcAI AGTACT 1 cut(s) 265
BmsI GCATC 3 cut(s) 52, 284, 310
Bse1I ACTGG 1 cut(s) 236
BseNI ACTGG 1 cut(s) 236
Bsp143I GATC 4 cut(s) 25, 48, 99, 300
BspACI CCGC 1 cut(s) 227
BsrI ACTGG 1 cut(s) 236
BssMI GATC 4 cut(s) 25, 48, 99, 300
BstKTI GATC 4 cut(s) 28, 51, 102, 303
BstMBI GATC 4 cut(s) 25, 48, 99, 300
BstSFI CTRYAG 1 cut(s) 294
BtsIMutI CAGTG 1 cut(s) 66
Csp6I GTAC 2 cut(s) 4, 264
CviAII CATG 1 cut(s) 15
CviJI RGCY 3 cut(s) 133, 192, 211
CviKI_1 RGCY 3 cut(s) 133, 192, 211
CviQI GTAC 2 cut(s) 4, 264
DpnI GATC 4 cut(s) 27, 50, 101, 302
DpnII GATC 4 cut(s) 25, 48, 99, 300
Eco57I CTGAAG 1 cut(s) 90
FaeI CATG 1 cut(s) 18
FaiI YATR 5 cut(s) 16, 89, 104, 122, 220
FalI AAGNNNNNCTT 4 cut(s) 200, 232, 253, 285
FatI CATG 1 cut(s) 14
FbaI TGATCA 2 cut(s) 25, 99
Hin1II CATG 1 cut(s) 18
HinfI GANTC 2 cut(s) 34, 290
Hpy188I TCNGA 1 cut(s) 25
Hpy188III TCNNGA 2 cut(s) 187, 279
HpyAV CCTTC 3 cut(s) 37, 156, 223
HpyCH4V TGCA 4 cut(s) 120, 275, 317, 323
Hsp92II CATG 1 cut(s) 18
Ksp22I TGATCA 2 cut(s) 25, 99
Kzo9I GATC 4 cut(s) 25, 48, 99, 300
LpnPI CCDG 1 cut(s) 249
LweI GCATC 3 cut(s) 52, 284, 310
MalI GATC 4 cut(s) 27, 50, 101, 302
MboI GATC 4 cut(s) 25, 48, 99, 300
MboII GAAGA 2 cut(s) 83, 106
MfeI CAATTG 1 cut(s) 29
MluCI AATT 4 cut(s) 29, 256, 307, 325
MnlI CCTC 3 cut(s) 203, 213, 244
MseI TTAA 2 cut(s) 260, 328
MslI CAYNNNNRTG 2 cut(s) 115, 125
MunI CAATTG 1 cut(s) 29
NdeII GATC 4 cut(s) 25, 48, 99, 300
NlaIII CATG 1 cut(s) 18
PfeI GAWTC 2 cut(s) 34, 290
RsaI GTAC 2 cut(s) 5, 265
RsaNI GTAC 2 cut(s) 4, 264
RseI CAYNNNNRTG 2 cut(s) 115, 125
SaqAI TTAA 2 cut(s) 260, 328
Sau3AI GATC 4 cut(s) 25, 48, 99, 300
ScaI AGTACT 1 cut(s) 265
SetI ASST 1 cut(s) 205
SfaNI GCATC 3 cut(s) 52, 284, 310
SfcI CTRYAG 1 cut(s) 294
SgeI CNNG 7 cut(s) 27, 50, 185, 199, 248, 282, 291
SmiMI CAYNNNNRTG 2 cut(s) 115, 125
Sse9I AATT 4 cut(s) 29, 256, 307, 325
SsiI CCGC 1 cut(s) 227
TaqI TCGA 2 cut(s) 51, 186
TasI AATT 4 cut(s) 29, 256, 307, 325
TatI WGTACW 2 cut(s) 3, 263
TfiI GAWTC 2 cut(s) 34, 290
Tru1I TTAA 2 cut(s) 260, 328
Tru9I TTAA 2 cut(s) 260, 328
TscAI CASTG 1 cut(s) 73
TspDTI ATGAA 3 cut(s) 90, 95, 143
TspRI CASTG 1 cut(s) 73
ZrmI AGTACT 1 cut(s) 265
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.