Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0001179

Physical Location & Seq

Genomic Coordinates Reverse (-)

38866140 .. 38866982

Gene Structure 843 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000024767

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

ATGTTGGATATATTAACGCTGGGCTTTGTGCTTTTGGCAATGTCAACCCCACCCGTCCTTTCTTGGGCAACAGGCACTTGCAGCACGGATGAACCCGATTGCATTGGCCAAGTTCAAAAGATTCTGTTTTACACAGCATTATCTCTAATAGCTGTGGCAGCTTCTTGTCACTTAACTTCTGGACTGACATATGGACTGTCATTTCTCACAGAGAAGTCGCCACCATCGGAGTCTGAGCCATTGACGACGCCACAATCAGATGGTTCTGAGGCAAACAACCGGGCGGGATTCTTCTGTGAGGCTCCTTTGGCTGGGGCGCTAATCCTTTTCGTCCCTCTAGTTTCACTTGTCGCAATTGGTTATATAAACCCTTGGTCGATCAAGTTCGGGATCCCAGCCATATTCGTCGTGGTATCACTTATTCTCTTCCTGATTGATTCAGGTGTTGTATCTTCTCTCGGAAATACTTTCTTCATTGAACAAGCCATCGACATGAACCACTATGTCGGAAGCCTGTGGGTTCCTATACTCATCCTTCCAATATTCCAACATTCTTACAAGAAGAAAAAACCACTAGACTGTGGTCTTCATCCGAAATTGGGGATTGCATTCTCAATGATATGCGCTATTCTTAGTTGTATCACAGCTGCAAGAGTGGAGACCAGGAGCTTAGGCGTGGTTACAAGCCAGGGTGTGATTGACGAGCAATGGCGAATCCAGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PTR2

Protein Analysis

242

Amino Acids

25.94

Weight (kDa)

5.12

Isoelectric Point (pI)

44.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001179)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38100 AT2G38100 AT2G38100
fragaria_vesca	FvH4_1g04590 FvH4_1g04590 FvH4_1g04590 FvH4_1g04640 FvH4_1g04640 FvH4_3g23670 FvH4_3g33690 FvH4_4g15600 FvH4_6g11880 FvH4_6g11890 FvH4_6g14971
malus_domestica	MD04G1148300.v1.1 MD12G1161800.v1.1 MD12G1161900.v1.1
prunus_persica	Prupe.6G272300_v2.0.a1 Prupe.6G272400_v2.0.a1 Prupe.6G272500_v2.0.a1 Prupe.6G272600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0061211 RchiOBHm_Chr5g0061221
rosa_laevigata	RLG00000000900 RLG00000002937 RLG00000002938 RLG00000009412 RLG00000019147 RLG00000024767 RLG00000024768 RLG00000035442
rosa_multiflora	Rmu_co8428917.1_g000001 Rmu_sc0001366.1_g000006 Rmu_sc0003267.1_g000026 Rmu_sc0008843.1_g000001
rosa_roxburghii	Rroxscaffold_1G00019490 Rroxscaffold_1G00019500
rosa_rugosa	Rorug03G0066600 Rorug03G0094900 Rorug05G0338700 Rorug05G0338800 Rorug05G0338900 Rorug07G0130600
rosa_samantha	Rh2DG376900 Rh3BG128300 Rh3CG130500 Rh3DG128900 Rh3DG164700 Rh4DG298600 Rh5AG399700 Rh5AG400000 Rh5BG412700 Rh5CG437400 Rh5DG427100
rosa_wichuraiana	Rw3G013480 Rw5G037690 Rw7G022480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	284
AclWI	GGATC	2 cut(s)	385, 398
AcoI	YGGCCR	1 cut(s)	106
AcyI	GRCGYC	1 cut(s)	248
AfiI	CCNNNNNNNGG	3 cut(s)	64, 311, 599
AgsI	TTSAA	2 cut(s)	116, 479
AjnI	CCWGG	3 cut(s)	662, 687, 717
AluBI	AGCT	4 cut(s)	152, 161, 647, 669
AluI	AGCT	4 cut(s)	152, 161, 647, 669
Alw26I	GTCTC	1 cut(s)	653
AlwI	GGATC	2 cut(s)	385, 398
AoxI	GGCC	1 cut(s)	106
ApeKI	GCWGC	3 cut(s)	81, 158, 647
AspLEI	GCGC	2 cut(s)	319, 626
AsuC2I	CCSGG	1 cut(s)	281
BalI	TGGCCA	1 cut(s)	108
BamHI	GGATCC	1 cut(s)	390
BbsI	GAAGAC	1 cut(s)	578
BbvI	GCAGC	3 cut(s)	93, 170, 634
BccI	CCATC	3 cut(s)	232, 254, 494
BciT130I	CCWGG	3 cut(s)	664, 689, 719
BcnI	CCSGG	1 cut(s)	281
BcoDI	GTCTC	1 cut(s)	653
BfaI	CTAG	2 cut(s)	338, 575
BfoI	RGCGCY	1 cut(s)	320
BisI	GCNGC	3 cut(s)	82, 159, 648
BlsI	GCNGC	3 cut(s)	83, 160, 649
Bme1390I	CCNGG	4 cut(s)	281, 664, 689, 719
BmiI	GGNNCC	3 cut(s)	303, 392, 522
BmrFI	CCNGG	4 cut(s)	281, 664, 689, 719
BoxI	GACNNNNGTC	1 cut(s)	582
BpiI	GAAGAC	1 cut(s)	578
Bpu10I	CCTNAGC	1 cut(s)	670
BpuMI	CCSGG	1 cut(s)	281
BsaHI	GRCGYC	1 cut(s)	248
BsaI	GGTCTC	1 cut(s)	653
BsaJI	CCNNGG	2 cut(s)	371, 688
Bsc4I	CCNNNNNNNGG	3 cut(s)	64, 311, 599
Bse3DI	GCAATG	2 cut(s)	45, 713
BseBI	CCWGG	3 cut(s)	664, 689, 719
BseDI	CCNNGG	2 cut(s)	371, 688
BseGI	GGATG	3 cut(s)	94, 531, 589
BseLI	CCNNNNNNNGG	3 cut(s)	64, 311, 599
BseMI	GCAATG	2 cut(s)	45, 713
BseMII	CTCAG	2 cut(s)	225, 258
BseXI	GCAGC	3 cut(s)	93, 170, 634
BseYI	CCCAGC	3 cut(s)	19, 311, 394
BshFI	GGCC	1 cut(s)	108
BsiSI	CCGG	1 cut(s)	280
BslFI	GGGAC	1 cut(s)	317
BslI	CCNNNNNNNGG	3 cut(s)	64, 311, 599
BsmAI	GTCTC	1 cut(s)	653
BsmFI	GGGAC	1 cut(s)	317
BsmI	GAATGC	1 cut(s)	608
BsnI	GGCC	1 cut(s)	108
Bso31I	GGTCTC	1 cut(s)	653
Bsp143I	GATC	2 cut(s)	378, 390
BspACI	CCGC	1 cut(s)	284
BspANI	GGCC	1 cut(s)	108
BspCNI	CTCAG	2 cut(s)	226, 259
BspLI	GGNNCC	3 cut(s)	303, 392, 522
BspPI	GGATC	2 cut(s)	385, 398
BspTNI	GGTCTC	1 cut(s)	653
BsrDI	GCAATG	2 cut(s)	45, 713
BssECI	CCNNGG	2 cut(s)	371, 688
BssMI	GATC	2 cut(s)	378, 390
BssNI	GRCGYC	1 cut(s)	248
BssT1I	CCWWGG	1 cut(s)	371
Bst2UI	CCWGG	3 cut(s)	664, 689, 719
Bst4CI	ACNGT	2 cut(s)	198, 581
Bst6I	CTCTTC	1 cut(s)	431
BstACI	GRCGYC	1 cut(s)	248
BstDEI	CTNAG	4 cut(s)	234, 267, 632, 670
BstF5I	GGATG	3 cut(s)	94, 531, 589
BstH2I	RGCGCY	1 cut(s)	320
BstHHI	GCGC	2 cut(s)	319, 626
BstKTI	GATC	2 cut(s)	381, 393
BstMAI	GTCTC	1 cut(s)	653
BstMBI	GATC	2 cut(s)	378, 390
BstMWI	GCNNNNNNNGC	3 cut(s)	81, 158, 308
BstNI	CCWGG	3 cut(s)	664, 689, 719
BstPAI	GACNNNNGTC	1 cut(s)	582
BstSCI	CCNGG	4 cut(s)	279, 662, 687, 717
BstV1I	GCAGC	3 cut(s)	93, 170, 634
BstV2I	GAAGAC	1 cut(s)	578
BstX2I	RGATCY	1 cut(s)	390
BstYI	RGATCY	1 cut(s)	390
BsuRI	GGCC	1 cut(s)	108
BtsCI	GGATG	3 cut(s)	94, 531, 589
CfoI	GCGC	2 cut(s)	319, 626
CseI	GACGC	1 cut(s)	256
CviAII	CATG	1 cut(s)	493
DdeI	CTNAG	4 cut(s)	234, 267, 632, 670
DpnI	GATC	2 cut(s)	380, 392
DpnII	GATC	2 cut(s)	378, 390
EaeI	YGGCCR	1 cut(s)	106
Eam1104I	CTCTTC	1 cut(s)	431
EarI	CTCTTC	1 cut(s)	431
Eco130I	CCWWGG	1 cut(s)	371
Eco31I	GGTCTC	1 cut(s)	653
EcoRII	CCWGG	3 cut(s)	662, 687, 717
EcoT14I	CCWWGG	1 cut(s)	371
ErhI	CCWWGG	1 cut(s)	371
FaeI	CATG	1 cut(s)	496
FaqI	GGGAC	1 cut(s)	317
FatI	CATG	1 cut(s)	492
FauI	CCCGC	1 cut(s)	277
FauNDI	CATATG	1 cut(s)	190
Fnu4HI	GCNGC	3 cut(s)	82, 159, 648
FokI	GGATG	3 cut(s)	101, 518, 576
Fsp4HI	GCNGC	3 cut(s)	82, 159, 648
FspBI	CTAG	2 cut(s)	338, 575
GlaI	GCGC	2 cut(s)	318, 625
GluI	GCNGC	3 cut(s)	82, 159, 648
GsaI	CCCAGC	3 cut(s)	23, 315, 398
HaeII	RGCGCY	1 cut(s)	320
HaeIII	GGCC	1 cut(s)	108
HapII	CCGG	1 cut(s)	280
HgaI	GACGC	1 cut(s)	256
HhaI	GCGC	2 cut(s)	319, 626
Hin1I	GRCGYC	1 cut(s)	248
Hin1II	CATG	1 cut(s)	496
Hin6I	GCGC	2 cut(s)	317, 624
HinP1I	GCGC	2 cut(s)	317, 624
HincII	GTYRAC	1 cut(s)	45
HindII	GTYRAC	1 cut(s)	45
HinfI	GANTC	5 cut(s)	121, 230, 288, 437, 714
HpaII	CCGG	1 cut(s)	280
Hpy166II	GTNNAC	1 cut(s)	45
Hpy188I	TCNGA	7 cut(s)	229, 235, 259, 268, 461, 509, 594
Hpy188III	TCNNGA	3 cut(s)	180, 388, 430
Hpy8I	GTNNAC	1 cut(s)	45
Hpy99I	CGWCG	2 cut(s)	250, 410
HpyAV	CCTTC	1 cut(s)	545
HpyCH4III	ACNGT	2 cut(s)	198, 581
HpyCH4V	TGCA	4 cut(s)	81, 102, 608, 650
HpyF10VI	GCNNNNNNNGC	3 cut(s)	81, 158, 308
HpyF3I	CTNAG	4 cut(s)	234, 267, 632, 670
Hsp92I	GRCGYC	1 cut(s)	248
Hsp92II	CATG	1 cut(s)	496
HspAI	GCGC	2 cut(s)	317, 624
Kzo9I	GATC	2 cut(s)	378, 390
LmnI	GCTCC	2 cut(s)	307, 666
Lsp1109I	GCAGC	3 cut(s)	93, 170, 634
MaeI	CTAG	2 cut(s)	338, 575
MaeIII	GTNAC	2 cut(s)	167, 679
MalI	GATC	2 cut(s)	380, 392
MboI	GATC	2 cut(s)	378, 390
MboII	GAAGA	6 cut(s)	283, 418, 444, 463, 574, 578
MfeI	CAATTG	1 cut(s)	354
MflI	RGATCY	1 cut(s)	390
MlsI	TGGCCA	1 cut(s)	108
MluCI	AATT	2 cut(s)	354, 596
MluNI	TGGCCA	1 cut(s)	108
MlyI	GAGTC	1 cut(s)	239
MmeI	TCCRAC	2 cut(s)	487, 571
MnlI	CCTC	3 cut(s)	262, 292, 345
Mox20I	TGGCCA	1 cut(s)	108
MscI	TGGCCA	1 cut(s)	108
MseI	TTAA	2 cut(s)	14, 173
MslI	CAYNNNNRTG	1 cut(s)	491
Msp20I	TGGCCA	1 cut(s)	108
MspA1I	CMGCKG	1 cut(s)	647
MspI	CCGG	1 cut(s)	280
MspR9I	CCNGG	4 cut(s)	281, 664, 689, 719
MunI	CAATTG	1 cut(s)	354
Mva1269I	GAATGC	1 cut(s)	608
MvaI	CCWGG	3 cut(s)	664, 689, 719
MwoI	GCNNNNNNNGC	3 cut(s)	81, 158, 308
NciI	CCSGG	1 cut(s)	281
NdeI	CATATG	1 cut(s)	190
NdeII	GATC	2 cut(s)	378, 390
NlaIII	CATG	1 cut(s)	496
NlaIV	GGNNCC	3 cut(s)	303, 392, 522
NmuCI	GTSAC	1 cut(s)	167
PctI	GAATGC	1 cut(s)	608
PfeI	GAWTC	4 cut(s)	121, 288, 437, 714
PfoI	TCCNGGA	1 cut(s)	717
PkrI	GCNGC	3 cut(s)	83, 160, 649
PleI	GAGTC	1 cut(s)	238
PpsI	GAGTC	1 cut(s)	238
PshAI	GACNNNNGTC	1 cut(s)	582
Psp6I	CCWGG	3 cut(s)	662, 687, 717
PspFI	CCCAGC	3 cut(s)	19, 311, 394
PspGI	CCWGG	3 cut(s)	662, 687, 717
PspN4I	GGNNCC	3 cut(s)	303, 392, 522
PsuI	RGATCY	1 cut(s)	390
PvuII	CAGCTG	1 cut(s)	647
RseI	CAYNNNNRTG	1 cut(s)	491
SaqAI	TTAA	2 cut(s)	14, 173
SatI	GCNGC	3 cut(s)	82, 159, 648
Sau3AI	GATC	2 cut(s)	378, 390
SchI	GAGTC	1 cut(s)	239
ScrFI	CCNGG	4 cut(s)	281, 664, 689, 719
SetI	ASST	5 cut(s)	154, 163, 445, 649, 671
SmiMI	CAYNNNNRTG	1 cut(s)	491
Sse9I	AATT	2 cut(s)	354, 596
SsiI	CCGC	1 cut(s)	284
SspI	AATATT	1 cut(s)	543
SspMI	CTAG	2 cut(s)	338, 575
StyD4I	CCNGG	4 cut(s)	279, 662, 687, 717
StyI	CCWWGG	1 cut(s)	371
TaaI	ACNGT	2 cut(s)	198, 581
TaqI	TCGA	2 cut(s)	377, 489
TasI	AATT	2 cut(s)	354, 596
TfiI	GAWTC	4 cut(s)	121, 288, 437, 714
Tru1I	TTAA	2 cut(s)	14, 173
Tru9I	TTAA	2 cut(s)	14, 173
TseFI	GTSAC	1 cut(s)	167
TseI	GCWGC	3 cut(s)	81, 158, 647
Tsp45I	GTSAC	1 cut(s)	167
TspDTI	ATGAA	4 cut(s)	105, 463, 509, 578
TspGWI	ACGGA	1 cut(s)	101
XcmI	CCANNNNNNNNNTGG	1 cut(s)	406
XspI	CTAG	2 cut(s)	338, 575

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.