FvH4_6g11880

Protein NRT1 PTR FAMILY

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0001179
Physical Location & Seq
Forward (+)
7112053 .. 7114501
2449 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g11880.t1

Sequence Viewer

Length: 1455 bp
ATGTCGACAACAACATCGGCACTTTCTCATCTGATGGATAGTGTTCAGACTCTGCCGGATTTACTTACCACGTATGTAATCTCGATAGTTGCTACATACTTGACTGGTGTATGGGGGCTCAGTATCGTAAGCGTTGCTGTTATCATCAACCTGTATTCAGGCATTGTTAGCATAATGCCGCTGGGCTTGAAATTCATAGTGGATGCTTTCATCGGAAACTATGGGAATGTCTTGCTATCCAGATATGCCTTTACTGCTGGGTTTGTGCTTTTGACGATGTCAACCCCAACCGTCCTTTCTCGGGCAACAGGTACTTGCAGCACAGATGAGCCCGAATGCATTGGCCAAGTACAAAAGCTTCTGTTTAACGTAGCATTGCCTCTAATAGCTGTGGCAGTTTCTTGCCACAAAACCTCGGGATTGACGTATAGATTGAAGTCATTTCTGAATGAGAAGTCACCATCCAAAGGGGCAGGCTTCTACTGTGAAGCTGTTTTAGGGTTTGTGCTAATGCTCTTCGTTCCTTTAGTTTCACTGGGGGCAATTGGTTATATAGAAACTTGGTCAGTCAAGTTTGGGATCCCAGCTATATTCATCGTGGTATCACTTATTCTCTTCCTGATTAATTCAGGTTCATACCAACCTCAAACTAGAGCAGAATGGAGCCTGCTTGGTGCCACTGTTTTTAGGAAAAAAGATTCCAGAAGCATCCTATCATTGATACCCGTATCCATTAGCTTTATCTTACTAGGTGTTGTATCTTCTCTTGGAAACACTTTCTTCATCGAACAAGCCGTAGACATGGATCACTATGTCGGAAGCTTGTGGGTTCCGATAATTATCCTTCCAGTTTTCCAACATTCTTACAAGAAGAAAAGAGCAATAAGTTTTGGTCTCAATCCAAACTTGGGGATTGCATTCTCGATGGTATTTGCAATTGTGAGCTGCATCACAGCTGCAAGAATGGAGACGAGGAGGTTAGGCGTGATCACAAGCCAGGACGAACATGAGGAAACCATTCCCATGACCATGTTTTGGTTGCTTCCACAGTTTCTTCTCCTCGGGTTGTCTGAAGCGATTTCAGATAAAAGCATTGCAGATTTCTTCTGTAATGAGTTGGTCCTCGAACCTAATGATGTCGAGGCAACAAGAGAATCAAATCGTAAGTACATGGAGTTCTTAGCTCAGGCTCTTAGTGGAGTGGGAATTATATTCGGTTTGTTATTGGTATATATAGTAAGGGACGTAACTGCTGCAAATGGAGGGACGAGTTGGTTCGGCAACACTGTAAACACGAGTCGTTTGGACAAGTACTACTGGACCTTGGCTGCATTTAGTGCTGCTAATCTGGTGTTATTTGGTGTTGTGATCTCTTCACATCGGCTTTGCACTAAATCAAGGTCAGTGGACGATGAGCAACCTTATTACAGTACTATTGTCCCACTGATAGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PTR2

Protein Analysis

485

Amino Acids

52.96

Weight (kDa)

6.6

Isoelectric Point (pI)

31.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PTR2 PF00854 226 - 372 4e-08 POT family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 674
AccB7I CCANNNNNTGG 1 cut(s) 1035
AccI GTMKAC 2 cut(s) 5, 798
AciI CCGC 1 cut(s) 179
AclWI GGATC 3 cut(s) 574, 587, 813
AcoI YGGCCR 1 cut(s) 343
AcsI RAATTY 1 cut(s) 191
AcuI CTGAAG 1 cut(s) 1092
AfaI GTAC 5 cut(s) 313, 351, 1169, 1313, 1432
AfiI CCNNNNNNNGG 4 cut(s) 301, 467, 908, 1035
AgsI TTSAA 2 cut(s) 190, 436
AjnI CCWGG 1 cut(s) 996
AjuI GAANNNNNNNTTGG 2 cut(s) 280, 312
AluBI AGCT 9 cut(s) 358, 389, 491, 587, 738, 822, 945, 956, 1184
AluI AGCT 9 cut(s) 358, 389, 491, 587, 738, 822, 945, 956, 1184
Alw26I GTCTC 2 cut(s) 899, 962
AlwI GGATC 3 cut(s) 574, 587, 813
AlwNI CAGNNNCTG 1 cut(s) 52
Ama87I CYCGRG 3 cut(s) 300, 415, 1061
AoxI GGCC 1 cut(s) 343
ApeKI GCWGC 6 cut(s) 318, 945, 956, 1253, 1328, 1340
ApoI RAATTY 1 cut(s) 191
AseI ATTAAT 1 cut(s) 624
Asp700I GAANNNNTTC 1 cut(s) 1017
AspS9I GGNCC 2 cut(s) 1120, 1320
AsuHPI GGTGA 1 cut(s) 450
AvaI CYCGRG 3 cut(s) 300, 415, 1061
AvaII GGWCC 2 cut(s) 1120, 1320
BalI TGGCCA 1 cut(s) 345
BamHI GGATCC 1 cut(s) 579
BanI GGYRCC 1 cut(s) 674
BanII GRGCYC 2 cut(s) 120, 333
BarI GAAGNNNNNNTAC 2 cut(s) 342, 374
BauI CACGAG 1 cut(s) 1294
BbvI GCAGC 6 cut(s) 330, 932, 943, 1240, 1315, 1327
BccI CCATC 3 cut(s) 28, 469, 919
BceAI ACGGC 1 cut(s) 779
BciT130I CCWGG 1 cut(s) 998
BciVI GTATCC 1 cut(s) 739
BclI TGATCA 1 cut(s) 987
BcoDI GTCTC 2 cut(s) 899, 962
BfaI CTAG 2 cut(s) 651, 749
BfuI GTATCC 1 cut(s) 739
BisI GCNGC 7 cut(s) 179, 319, 946, 957, 1254, 1329, 1341
BlsI GCNGC 7 cut(s) 180, 320, 947, 958, 1255, 1330, 1342
BmcAI AGTACT 2 cut(s) 1313, 1432
Bme1390I CCNGG 1 cut(s) 998
Bme18I GGWCC 2 cut(s) 1120, 1320
BmeT110I CYCGRG 3 cut(s) 300, 415, 1061
BmgT120I GGNCC 2 cut(s) 1120, 1320
BmiI GGNNCC 4 cut(s) 581, 665, 676, 831
BmrFI CCNGG 1 cut(s) 998
BmrI ACTGGG 1 cut(s) 545
BmsI GCATC 3 cut(s) 193, 717, 957
BmuI ACTGGG 1 cut(s) 545
Bpu10I CCTNAGC 1 cut(s) 1185
BsaAI YACGTR 1 cut(s) 72
BsaBI GATNNNNATC 1 cut(s) 839
BsaI GGTCTC 1 cut(s) 899
BsaJI CCNNGG 3 cut(s) 414, 1060, 1323
Bsc4I CCNNNNNNNGG 4 cut(s) 301, 467, 908, 1035
Bse1I ACTGG 4 cut(s) 109, 540, 848, 1322
Bse3DI GCAATG 2 cut(s) 374, 1092
Bse8I GATNNNNATC 1 cut(s) 839
BseBI CCWGG 1 cut(s) 998
BseDI CCNNGG 3 cut(s) 414, 1060, 1323
BseGI GGATG 3 cut(s) 208, 461, 708
BseJI GATNNNNATC 1 cut(s) 839
BseLI CCNNNNNNNGG 4 cut(s) 301, 467, 908, 1035
BseMI GCAATG 2 cut(s) 374, 1092
BseMII CTCAG 2 cut(s) 133, 1199
BseNI ACTGG 4 cut(s) 109, 540, 848, 1322
BseRI GAGGAG 2 cut(s) 988, 1049
BseXI GCAGC 6 cut(s) 330, 932, 943, 1240, 1315, 1327
BseYI CCCAGC 3 cut(s) 181, 257, 583
BshFI GGCC 1 cut(s) 345
BshNI GGYRCC 1 cut(s) 674
BsiHKCI CYCGRG 3 cut(s) 300, 415, 1061
BsiSI CCGG 1 cut(s) 56
BslFI GGGAC 3 cut(s) 1256, 1279, 1424
BslI CCNNNNNNNGG 4 cut(s) 301, 467, 908, 1035
BsmAI GTCTC 2 cut(s) 899, 962
BsmBI CGTCTC 1 cut(s) 962
BsmFI GGGAC 3 cut(s) 1256, 1279, 1424
BsmI GAATGC 2 cut(s) 341, 917
BsnI GGCC 1 cut(s) 345
Bso31I GGTCTC 1 cut(s) 899
BsoBI CYCGRG 3 cut(s) 300, 415, 1061
Bsp1286I GDGCHC 2 cut(s) 120, 333
Bsp143I GATC 4 cut(s) 579, 805, 987, 1368
BspACI CCGC 1 cut(s) 179
BspANI GGCC 1 cut(s) 345
BspCNI CTCAG 2 cut(s) 132, 1198
BspLI GGNNCC 4 cut(s) 581, 665, 676, 831
BspPI GGATC 3 cut(s) 574, 587, 813
BspQI GCTCTTC 1 cut(s) 521
BspT107I GGYRCC 1 cut(s) 674
BspTNI GGTCTC 1 cut(s) 899
BsrDI GCAATG 2 cut(s) 374, 1092
BsrI ACTGG 4 cut(s) 109, 540, 848, 1322
BssECI CCNNGG 3 cut(s) 414, 1060, 1323
BssMI GATC 4 cut(s) 579, 805, 987, 1368
BssSI CACGAG 1 cut(s) 1294
BssT1I CCWWGG 1 cut(s) 1323
Bst2BI CACGAG 1 cut(s) 1294
Bst2UI CCWGG 1 cut(s) 998
Bst4CI ACNGT 6 cut(s) 292, 485, 682, 1050, 1288, 1430
Bst6I CTCTTC 3 cut(s) 521, 620, 1378
BstAPI GCANNNNNTGC 1 cut(s) 1337
BstBAI YACGTR 1 cut(s) 72
BstC8I GCNNGC 2 cut(s) 475, 668
BstDEI CTNAG 4 cut(s) 119, 1180, 1185, 1193
BstF5I GGATG 3 cut(s) 208, 461, 708
BstKTI GATC 4 cut(s) 582, 808, 990, 1371
BstMAI GTCTC 2 cut(s) 899, 962
BstMBI GATC 4 cut(s) 579, 805, 987, 1368
BstMWI GCNNNNNNNGC 3 cut(s) 168, 254, 1337
BstNI CCWGG 1 cut(s) 998
BstSCI CCNGG 1 cut(s) 996
BstV1I GCAGC 6 cut(s) 330, 932, 943, 1240, 1315, 1327
BstX2I RGATCY 1 cut(s) 579
BstYI RGATCY 1 cut(s) 579
BsuI GTATCC 1 cut(s) 739
BsuRI GGCC 1 cut(s) 345
BtsCI GGATG 3 cut(s) 208, 461, 708
BtsIMutI CAGTG 5 cut(s) 533, 678, 1284, 1410, 1442
Cac8I GCNNGC 2 cut(s) 475, 668
CaiI CAGNNNCTG 1 cut(s) 52
Cfr13I GGNCC 2 cut(s) 1120, 1320
Csp6I GTAC 5 cut(s) 312, 350, 1168, 1312, 1431
CspCI CAANNNNNGTGG 2 cut(s) 1386, 1421
CviAII CATG 5 cut(s) 802, 1007, 1024, 1030, 1171
CviQI GTAC 5 cut(s) 312, 350, 1168, 1312, 1431
DdeI CTNAG 4 cut(s) 119, 1180, 1185, 1193
DpnI GATC 4 cut(s) 581, 807, 989, 1370
DpnII GATC 4 cut(s) 579, 805, 987, 1368
EaeI YGGCCR 1 cut(s) 343
Eam1104I CTCTTC 3 cut(s) 521, 620, 1378
EarI CTCTTC 3 cut(s) 521, 620, 1378
Eco130I CCWWGG 1 cut(s) 1323
Eco24I GRGCYC 2 cut(s) 120, 333
Eco31I GGTCTC 1 cut(s) 899
Eco47I GGWCC 2 cut(s) 1120, 1320
Eco57I CTGAAG 1 cut(s) 1092
Eco88I CYCGRG 3 cut(s) 300, 415, 1061
EcoRII CCWGG 1 cut(s) 996
EcoT14I CCWWGG 1 cut(s) 1323
EcoT22I ATGCAT 1 cut(s) 341
EcoT38I GRGCYC 2 cut(s) 120, 333
ErhI CCWWGG 1 cut(s) 1323
Esp3I CGTCTC 1 cut(s) 962
FaeI CATG 5 cut(s) 805, 1010, 1027, 1033, 1174
FaqI GGGAC 3 cut(s) 1256, 1279, 1424
FatI CATG 5 cut(s) 801, 1006, 1023, 1029, 1170
FbaI TGATCA 1 cut(s) 987
FblI GTMKAC 2 cut(s) 5, 798
Fnu4HI GCNGC 7 cut(s) 179, 319, 946, 957, 1254, 1329, 1341
FokI GGATG 3 cut(s) 215, 448, 695
FriOI GRGCYC 2 cut(s) 120, 333
Fsp4HI GCNGC 7 cut(s) 179, 319, 946, 957, 1254, 1329, 1341
FspBI CTAG 2 cut(s) 651, 749
GluI GCNGC 7 cut(s) 179, 319, 946, 957, 1254, 1329, 1341
GsaI CCCAGC 3 cut(s) 185, 261, 587
HaeIII GGCC 1 cut(s) 345
HapII CCGG 1 cut(s) 56
Hin1II CATG 5 cut(s) 805, 1010, 1027, 1033, 1174
HincII GTYRAC 2 cut(s) 6, 282
HindII GTYRAC 2 cut(s) 6, 282
HindIII AAGCTT 2 cut(s) 356, 820
HinfI GANTC 4 cut(s) 49, 698, 1154, 1297
HpaII CCGG 1 cut(s) 56
HphI GGTGA 1 cut(s) 450
Hpy166II GTNNAC 5 cut(s) 6, 282, 799, 1291, 1408
Hpy188I TCNGA 8 cut(s) 33, 48, 215, 447, 818, 834, 1072, 1084
Hpy188III TCNNGA 6 cut(s) 82, 240, 417, 619, 702, 922
Hpy8I GTNNAC 5 cut(s) 6, 282, 799, 1291, 1408
HpyAV CCTTC 1 cut(s) 854
HpyCH4III ACNGT 6 cut(s) 292, 485, 682, 1050, 1288, 1430
HpyCH4IV ACGT 4 cut(s) 71, 369, 425, 1245
HpyF10VI GCNNNNNNNGC 3 cut(s) 168, 254, 1337
HpyF3I CTNAG 4 cut(s) 119, 1180, 1185, 1193
HpySE526I ACGT 4 cut(s) 71, 369, 425, 1245
Hsp92II CATG 5 cut(s) 805, 1010, 1027, 1033, 1174
Ksp22I TGATCA 1 cut(s) 987
Kzo9I GATC 4 cut(s) 579, 805, 987, 1368
LguI GCTCTTC 1 cut(s) 521
LmnI GCTCC 1 cut(s) 663
Lsp1109I GCAGC 6 cut(s) 330, 932, 943, 1240, 1315, 1327
LweI GCATC 3 cut(s) 193, 717, 957
MaeI CTAG 2 cut(s) 651, 749
MaeII ACGT 4 cut(s) 71, 369, 425, 1245
MaeIII GTNAC 2 cut(s) 456, 1246
MalI GATC 4 cut(s) 581, 807, 989, 1370
MboI GATC 4 cut(s) 579, 805, 987, 1368
MboII GAAGA 8 cut(s) 508, 607, 753, 772, 883, 1046, 1096, 1365
MfeI CAATTG 2 cut(s) 543, 936
MflI RGATCY 1 cut(s) 579
MhlI GDGCHC 2 cut(s) 120, 333
MlsI TGGCCA 1 cut(s) 345
MluCI AATT 6 cut(s) 191, 543, 625, 837, 936, 1206
MluNI TGGCCA 1 cut(s) 345
MlyI GAGTC 2 cut(s) 43, 1306
MmeI TCCRAC 2 cut(s) 796, 880
Mox20I TGGCCA 1 cut(s) 345
Mph1103I ATGCAT 1 cut(s) 341
MroXI GAANNNNTTC 1 cut(s) 1017
MscI TGGCCA 1 cut(s) 345
MseI TTAA 2 cut(s) 366, 624
MslI CAYNNNNRTG 2 cut(s) 1022, 1028
Msp20I TGGCCA 1 cut(s) 345
MspA1I CMGCKG 2 cut(s) 181, 956
MspI CCGG 1 cut(s) 56
MspR9I CCNGG 1 cut(s) 998
MunI CAATTG 2 cut(s) 543, 936
Mva1269I GAATGC 2 cut(s) 341, 917
MvaI CCWGG 1 cut(s) 998
MwoI GCNNNNNNNGC 3 cut(s) 168, 254, 1337
NdeII GATC 4 cut(s) 579, 805, 987, 1368
NlaIII CATG 5 cut(s) 805, 1010, 1027, 1033, 1174
NlaIV GGNNCC 4 cut(s) 581, 665, 676, 831
NmuCI GTSAC 1 cut(s) 456
NsiI ATGCAT 1 cut(s) 341
PciSI GCTCTTC 1 cut(s) 521
PcsI WCGNNNNNNNCGW 2 cut(s) 422, 792
PctI GAATGC 2 cut(s) 341, 917
PdmI GAANNNNTTC 1 cut(s) 1017
PfeI GAWTC 2 cut(s) 698, 1154
PflFI GACNNNGTC 1 cut(s) 277
PflMI CCANNNNNTGG 1 cut(s) 1035
PkrI GCNGC 7 cut(s) 180, 320, 947, 958, 1255, 1330, 1342
PleI GAGTC 2 cut(s) 43, 1305
PpsI GAGTC 2 cut(s) 43, 1305
Ppu21I YACGTR 1 cut(s) 72
PshBI ATTAAT 1 cut(s) 624
Psp6I CCWGG 1 cut(s) 996
PspFI CCCAGC 3 cut(s) 181, 257, 583
PspGI CCWGG 1 cut(s) 996
PspN4I GGNNCC 4 cut(s) 581, 665, 676, 831
PspPI GGNCC 2 cut(s) 1120, 1320
PsrI GAACNNNNNNTAC 2 cut(s) 1160, 1192
PstNI CAGNNNCTG 1 cut(s) 52
PsuI RGATCY 1 cut(s) 579
PsyI GACNNNGTC 1 cut(s) 277
PvuII CAGCTG 1 cut(s) 956
RsaI GTAC 5 cut(s) 313, 351, 1169, 1313, 1432
RsaNI GTAC 5 cut(s) 312, 350, 1168, 1312, 1431
RseI CAYNNNNRTG 2 cut(s) 1022, 1028
SalI GTCGAC 1 cut(s) 4
SapI GCTCTTC 1 cut(s) 521
SaqAI TTAA 2 cut(s) 366, 624
SatI GCNGC 7 cut(s) 179, 319, 946, 957, 1254, 1329, 1341
Sau3AI GATC 4 cut(s) 579, 805, 987, 1368
Sau96I GGNCC 2 cut(s) 1120, 1320
ScaI AGTACT 2 cut(s) 1313, 1432
SchI GAGTC 2 cut(s) 43, 1306
ScrFI CCNGG 1 cut(s) 998
SduI GDGCHC 2 cut(s) 120, 333
SfaNI GCATC 3 cut(s) 193, 717, 957
SinI GGWCC 2 cut(s) 1120, 1320
SmiMI CAYNNNNRTG 2 cut(s) 1022, 1028
Sse9I AATT 6 cut(s) 191, 543, 625, 837, 936, 1206
SsiI CCGC 1 cut(s) 179
SspMI CTAG 2 cut(s) 651, 749
StyD4I CCNGG 1 cut(s) 996
StyI CCWWGG 1 cut(s) 1323
TaaI ACNGT 6 cut(s) 292, 485, 682, 1050, 1288, 1430
TaiI ACGT 4 cut(s) 74, 372, 428, 1248
TaqI TCGA 6 cut(s) 5, 83, 786, 923, 1125, 1140
TasI AATT 6 cut(s) 191, 543, 625, 837, 936, 1206
TatI WGTACW 4 cut(s) 349, 1167, 1311, 1430
TauI GCSGC 1 cut(s) 181
TfiI GAWTC 2 cut(s) 698, 1154
Tru1I TTAA 2 cut(s) 366, 624
Tru9I TTAA 2 cut(s) 366, 624
TscAI CASTG 5 cut(s) 540, 685, 1291, 1410, 1449
TseFI GTSAC 1 cut(s) 456
TseI GCWGC 6 cut(s) 318, 945, 956, 1253, 1328, 1340
Tsp45I GTSAC 1 cut(s) 456
TspDTI ATGAA 5 cut(s) 184, 199, 583, 624, 772
TspRI CASTG 5 cut(s) 540, 685, 1291, 1410, 1449
Tth111I GACNNNGTC 1 cut(s) 277
Van91I CCANNNNNTGG 1 cut(s) 1035
VpaK11BI GGWCC 2 cut(s) 1120, 1320
VspI ATTAAT 1 cut(s) 624
XapI RAATTY 1 cut(s) 191
XmiI GTMKAC 2 cut(s) 5, 798
XmnI GAANNNNTTC 1 cut(s) 1017
XspI CTAG 2 cut(s) 651, 749
ZrmI AGTACT 2 cut(s) 1313, 1432
Zsp2I ATGCAT 1 cut(s) 341
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.