RLG00000019147

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0001179
Physical Location & Seq
Reverse (-)
47359558 .. 47367171
7614 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000019147

Sequence Viewer

Length: 693 bp
ATGCAGTGCGAAGGAATGTGGGTATTGCTCGGAGGTTCATGTAGGACCTTGGGGTCAGAATGCAAAGCTTTGTGGAACTCACTGAAAGGTCTTGCGGGTAGTATAACTGCAGCATTCAAGAAATTATCAATTGTTTTCTTTCTAACTGAACTCACTATAAGGAAACTGCCGCCGCCGCCGCCCATCTATCGGAAGCCAGAGGCAAGCAGTCCTGCAGAGGAAGCCACAGTGGCGTTTGACGATGCGGTGCAGAACTGCAGATCAGCAGAGGCGGCTTCCTTAGATCGGTGTGAGTTTCCAGATTCCGGTGAGTCGATCAAAAACACAGGGATTGGCTCTGAGTTTCCAGATTCCGGTGAGTCGGTTGGCTCTGAGCTCCTGCTTGATCCATATGGAGGCCATGTTTTTGATCTGTTTGATCAGAGATTCAGAGGATGTGCGTTATCAAAAGACCAAAAGCAGAAGAATATTGCAGCATGCACATCGAAGTCTAAACAATCCTTGTATTTACAAAGAGGATGGGTTGGGTTGGCGGCGGCGGCGGCGGTGGAGGGTGATAGGAGAAATGGAGTCTGGCAGGGATCGGGAGTTGGGCTTGGCGGCGAGGTCGAGATAGGAGATGAGGGACTTGAGGGAGGGGTCGCGGTCGATGAAGGCGGGGAGAAGGAGAGGAGAGGATATCGGTGGGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

231

Amino Acids

24.56

Weight (kDa)

5.05

Isoelectric Point (pI)

44.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 52
AccII CGCG 1 cut(s) 644
AclWI GGATC 2 cut(s) 380, 589
AfiI CCNNNNNNNGG 5 cut(s) 189, 285, 305, 353, 395
AgsI TTSAA 1 cut(s) 118
AluBI AGCT 2 cut(s) 68, 376
AluI AGCT 2 cut(s) 68, 376
Alw21I GWGCWC 1 cut(s) 378
AlwI GGATC 2 cut(s) 380, 589
AoxI GGCC 1 cut(s) 397
ApeKI GCWGC 2 cut(s) 110, 473
AspS9I GGNCC 1 cut(s) 45
AsuHPI GGTGA 3 cut(s) 320, 368, 566
AvaII GGWCC 1 cut(s) 45
BanII GRGCYC 1 cut(s) 378
Bbv12I GWGCWC 1 cut(s) 378
BbvI GCAGC 2 cut(s) 122, 485
BccI CCATC 2 cut(s) 191, 513
BcgI CGANNNNNNTGC 2 cut(s) 465, 499
BclI TGATCA 1 cut(s) 418
BfmI CTRYAG 3 cut(s) 108, 213, 256
BglI GCCNNNNNGGC 1 cut(s) 230
Bme18I GGWCC 1 cut(s) 45
BmgT120I GGNCC 1 cut(s) 45
BmsI GCATC 1 cut(s) 232
BpuEI CTTGAG 1 cut(s) 650
BsaJI CCNNGG 1 cut(s) 48
BsaWI WCCGGW 2 cut(s) 305, 353
BsaXI ACNNNNNCTCC 2 cut(s) 387, 417
Bsc4I CCNNNNNNNGG 5 cut(s) 189, 285, 305, 353, 395
BseDI CCNNGG 1 cut(s) 48
BseGI GGATG 2 cut(s) 440, 524
BseLI CCNNNNNNNGG 5 cut(s) 189, 285, 305, 353, 395
BseMII CTCAG 2 cut(s) 330, 363
BseRI GAGGAG 1 cut(s) 685
BseXI GCAGC 2 cut(s) 122, 485
BsgI GTGCAG 1 cut(s) 269
Bsh1236I CGCG 1 cut(s) 644
Bsh1285I CGRYCG 1 cut(s) 648
BshFI GGCC 1 cut(s) 399
BsiEI CGRYCG 1 cut(s) 648
BsiHKAI GWGCWC 1 cut(s) 378
BsiSI CCGG 2 cut(s) 306, 354
BslFI GGGAC 1 cut(s) 639
BslI CCNNNNNNNGG 5 cut(s) 189, 285, 305, 353, 395
BsmFI GGGAC 1 cut(s) 639
BsmI GAATGC 2 cut(s) 65, 113
BsnI GGCC 1 cut(s) 399
Bsp1286I GDGCHC 1 cut(s) 378
Bsp143I GATC 7 cut(s) 260, 283, 315, 385, 409, 418, 581
BspANI GGCC 1 cut(s) 399
BspCNI CTCAG 2 cut(s) 331, 364
BspFNI CGCG 1 cut(s) 644
BspMAI CTGCAG 3 cut(s) 112, 217, 260
BspPI GGATC 2 cut(s) 380, 589
BssECI CCNNGG 1 cut(s) 48
BssMI GATC 7 cut(s) 260, 283, 315, 385, 409, 418, 581
BssT1I CCWWGG 1 cut(s) 48
Bst4CI ACNGT 1 cut(s) 229
BstC8I GCNNGC 2 cut(s) 205, 478
BstDEI CTNAG 3 cut(s) 280, 339, 372
BstF5I GGATG 2 cut(s) 440, 524
BstFNI CGCG 1 cut(s) 644
BstKTI GATC 7 cut(s) 263, 286, 318, 388, 412, 421, 584
BstMBI GATC 7 cut(s) 260, 283, 315, 385, 409, 418, 581
BstMCI CGRYCG 1 cut(s) 648
BstMWI GCNNNNNNNGC 7 cut(s) 175, 178, 221, 230, 272, 539, 542
BstNSI RCATGY 1 cut(s) 480
BstSFI CTRYAG 3 cut(s) 108, 213, 256
BstUI CGCG 1 cut(s) 644
BstV1I GCAGC 2 cut(s) 122, 485
BsuRI GGCC 1 cut(s) 399
BtsCI GGATG 2 cut(s) 440, 524
BtsI GCAGTG 1 cut(s) 11
BtsIMutI CAGTG 3 cut(s) 11, 80, 234
Cac8I GCNNGC 2 cut(s) 205, 478
Cfr13I GGNCC 1 cut(s) 45
CviAII CATG 3 cut(s) 39, 401, 477
CviJI RGCY 9 cut(s) 68, 196, 224, 275, 336, 369, 376, 399, 595
CviKI_1 RGCY 9 cut(s) 68, 196, 224, 275, 336, 369, 376, 399, 595
DdeI CTNAG 3 cut(s) 280, 339, 372
DpnI GATC 7 cut(s) 262, 285, 317, 387, 411, 420, 583
DpnII GATC 7 cut(s) 260, 283, 315, 385, 409, 418, 581
DrdI GACNNNNNNGTC 1 cut(s) 52
DseDI GACNNNNNNGTC 1 cut(s) 52
Ecl136II GAGCTC 1 cut(s) 376
Eco130I CCWWGG 1 cut(s) 48
Eco24I GRGCYC 1 cut(s) 378
Eco32I GATATC 1 cut(s) 680
Eco47I GGWCC 1 cut(s) 45
Eco53kI GAGCTC 1 cut(s) 376
EcoICRI GAGCTC 1 cut(s) 376
EcoO109I RGGNCCY 1 cut(s) 45
EcoRV GATATC 1 cut(s) 680
EcoT14I CCWWGG 1 cut(s) 48
EcoT38I GRGCYC 1 cut(s) 378
ErhI CCWWGG 1 cut(s) 48
FaeI CATG 3 cut(s) 42, 404, 480
FaiI YATR 7 cut(s) 40, 104, 158, 391, 393, 402, 478
FaqI GGGAC 1 cut(s) 639
FatI CATG 3 cut(s) 38, 400, 476
FauI CCCGC 2 cut(s) 88, 650
FauNDI CATATG 1 cut(s) 391
FbaI TGATCA 1 cut(s) 418
FokI GGATG 2 cut(s) 447, 531
FriOI GRGCYC 1 cut(s) 378
HaeIII GGCC 1 cut(s) 399
HapII CCGG 2 cut(s) 306, 354
Hin1II CATG 3 cut(s) 42, 404, 480
HindIII AAGCTT 1 cut(s) 66
HinfI GANTC 6 cut(s) 302, 311, 350, 359, 426, 570
HpaII CCGG 2 cut(s) 306, 354
HphI GGTGA 3 cut(s) 320, 368, 566
Hpy188I TCNGA 7 cut(s) 32, 58, 192, 340, 373, 423, 431
Hpy188III TCNNGA 5 cut(s) 118, 299, 347, 585, 610
HpyAV CCTTC 3 cut(s) 5, 647, 658
HpyCH4III ACNGT 1 cut(s) 229
HpyCH4V TGCA 8 cut(s) 4, 63, 110, 215, 250, 258, 473, 480
HpyF10VI GCNNNNNNNGC 7 cut(s) 175, 178, 221, 230, 272, 539, 542
HpyF3I CTNAG 3 cut(s) 280, 339, 372
Hsp92II CATG 3 cut(s) 42, 404, 480
Ksp22I TGATCA 1 cut(s) 418
Kzo9I GATC 7 cut(s) 260, 283, 315, 385, 409, 418, 581
LmnI GCTCC 1 cut(s) 381
Lsp1109I GCAGC 2 cut(s) 122, 485
LweI GCATC 1 cut(s) 232
MalI GATC 7 cut(s) 262, 285, 317, 387, 411, 420, 583
MboI GATC 7 cut(s) 260, 283, 315, 385, 409, 418, 581
MboII GAAGA 1 cut(s) 475
MfeI CAATTG 1 cut(s) 129
MhlI GDGCHC 1 cut(s) 378
MluCI AATT 2 cut(s) 122, 129
MlyI GAGTC 3 cut(s) 320, 368, 579
MspI CCGG 2 cut(s) 306, 354
MunI CAATTG 1 cut(s) 129
Mva1269I GAATGC 2 cut(s) 65, 113
MvnI CGCG 1 cut(s) 644
MwoI GCNNNNNNNGC 7 cut(s) 175, 178, 221, 230, 272, 539, 542
NdeI CATATG 1 cut(s) 391
NdeII GATC 7 cut(s) 260, 283, 315, 385, 409, 418, 581
NlaIII CATG 3 cut(s) 42, 404, 480
NspI RCATGY 1 cut(s) 480
PaeI GCATGC 1 cut(s) 480
PctI GAATGC 2 cut(s) 65, 113
PfeI GAWTC 3 cut(s) 302, 350, 426
PleI GAGTC 3 cut(s) 319, 367, 578
PpsI GAGTC 3 cut(s) 319, 367, 578
PpuMI RGGWCCY 1 cut(s) 45
Psp124BI GAGCTC 1 cut(s) 378
Psp5II RGGWCCY 1 cut(s) 45
PspPI GGNCC 1 cut(s) 45
PspPPI RGGWCCY 1 cut(s) 45
PstI CTGCAG 3 cut(s) 112, 217, 260
SacI GAGCTC 1 cut(s) 378
Sau3AI GATC 7 cut(s) 260, 283, 315, 385, 409, 418, 581
Sau96I GGNCC 1 cut(s) 45
SchI GAGTC 3 cut(s) 320, 368, 579
SduI GDGCHC 1 cut(s) 378
SetI ASST 6 cut(s) 37, 50, 70, 91, 378, 609
SfaNI GCATC 1 cut(s) 232
SfcI CTRYAG 3 cut(s) 108, 213, 256
SinI GGWCC 1 cut(s) 45
SmlI CTYRAG 1 cut(s) 629
SmoI CTYRAG 1 cut(s) 629
SphI GCATGC 1 cut(s) 480
Sse9I AATT 2 cut(s) 122, 129
SspI AATATT 1 cut(s) 469
SstI GAGCTC 1 cut(s) 378
StyI CCWWGG 1 cut(s) 48
TaaI ACNGT 1 cut(s) 229
TaqI TCGA 4 cut(s) 314, 485, 609, 648
TasI AATT 2 cut(s) 122, 129
TfiI GAWTC 3 cut(s) 302, 350, 426
TscAI CASTG 2 cut(s) 87, 234
TseI GCWGC 2 cut(s) 110, 473
TspDTI ATGAA 2 cut(s) 27, 666
TspRI CASTG 2 cut(s) 87, 234
VpaK11BI GGWCC 1 cut(s) 45
XceI RCATGY 1 cut(s) 480
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.