Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0001179

Physical Location & Seq

Genomic Coordinates Reverse (-)

25770645 .. 25771184

Gene Structure 540 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G272300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGTCAATGGTGTTTGCAACTCTCTGTTACATCACGGCTGCGAAAGTGGAGACCCGAAAACTAGGCGTGGTTGAGACAGAGGGTTTTAGCGACGATGCCACGTCGATAATTCCCATGACCATGTTCTGGTTGCTTCCTCAATATATTCTACTTGGGTTGTCGGAAGCGTTTTTCGAGAAGTGCATTGCGGTTTTTTTCAGCGACGAGCTGCTGCCTGGAGCCAATGAGGGTGATGAGGCAGCAAAAGGGGCGAAGAAGAAATACATCGAAAGCTTTGCTCAGGCTGTTAATGGGGTGGGGATTATATTGGGTGTGTTGATAGTTTATATAGTGGGTGAGATTCAACCCACTTGGTTCCAATCCACGGTGAACAAGAGCCGTTTGGATAATTACTTCTGGACCTTGGCTGCATTGTTTGCAGCTACTCTTGTATTGTTTGGTTTGTTCAGCTGTTGTCTGTCTGTTTATGAGTTTAATCGTCGGTCGACAGAGGATGTGGAAGGCAATGTCACTCCAGCAACAACAACAACAACGACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PTR2

Protein Analysis

180

Amino Acids

19.69

Weight (kDa)

4.58

Isoelectric Point (pI)

31.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001179)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38100 AT2G38100 AT2G38100
fragaria_vesca	FvH4_1g04590 FvH4_1g04590 FvH4_1g04590 FvH4_1g04640 FvH4_1g04640 FvH4_3g23670 FvH4_3g33690 FvH4_4g15600 FvH4_6g11880 FvH4_6g11890 FvH4_6g14971
malus_domestica	MD04G1148300.v1.1 MD12G1161800.v1.1 MD12G1161900.v1.1
prunus_persica	Prupe.6G272300_v2.0.a1 Prupe.6G272400_v2.0.a1 Prupe.6G272500_v2.0.a1 Prupe.6G272600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0061211 RchiOBHm_Chr5g0061221
rosa_laevigata	RLG00000000900 RLG00000002937 RLG00000002938 RLG00000009412 RLG00000019147 RLG00000024767 RLG00000024768 RLG00000035442
rosa_multiflora	Rmu_co8428917.1_g000001 Rmu_sc0001366.1_g000006 Rmu_sc0003267.1_g000026 Rmu_sc0008843.1_g000001
rosa_roxburghii	Rroxscaffold_1G00019490 Rroxscaffold_1G00019500
rosa_rugosa	Rorug03G0066600 Rorug03G0094900 Rorug05G0338700 Rorug05G0338800 Rorug05G0338900 Rorug07G0130600
rosa_samantha	Rh2DG376900 Rh3BG128300 Rh3CG130500 Rh3DG128900 Rh3DG164700 Rh4DG298600 Rh5AG399700 Rh5AG400000 Rh5BG412700 Rh5CG437400 Rh5DG427100
rosa_wichuraiana	Rw3G013480 Rw5G037690 Rw7G022480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	126
AccI	GTMKAC	1 cut(s)	485
AciI	CCGC	1 cut(s)	188
AfiI	CCNNNNNNNGG	2 cut(s)	126, 364
AgsI	TTSAA	1 cut(s)	344
AjiI	CACGTC	1 cut(s)	102
AjnI	CCWGG	1 cut(s)	214
AluBI	AGCT	4 cut(s)	208, 273, 422, 450
AluI	AGCT	4 cut(s)	208, 273, 422, 450
Alw26I	GTCTC	2 cut(s)	44, 68
ApeKI	GCWGC	6 cut(s)	38, 208, 211, 239, 407, 419
AspS9I	GGNCC	1 cut(s)	399
AsuHPI	GGTGA	3 cut(s)	242, 347, 379
AvaII	GGWCC	1 cut(s)	399
BarI	GAAGNNNNNNTAC	2 cut(s)	245, 277
BbvI	GCAGC	6 cut(s)	25, 195, 198, 251, 394, 431
BceAI	ACGGC	2 cut(s)	51, 363
BcgI	CGANNNNNNTGC	2 cut(s)	257, 291
BciT130I	CCWGG	1 cut(s)	216
BcoDI	GTCTC	2 cut(s)	44, 68
BfaI	CTAG	1 cut(s)	62
BisI	GCNGC	6 cut(s)	39, 209, 212, 240, 408, 420
BlsI	GCNGC	6 cut(s)	40, 210, 213, 241, 409, 421
Bme1390I	CCNGG	1 cut(s)	216
Bme18I	GGWCC	1 cut(s)	399
BmgBI	CACGTC	1 cut(s)	102
BmgT120I	GGNCC	1 cut(s)	399
BmiI	GGNNCC	2 cut(s)	220, 356
BmrFI	CCNGG	1 cut(s)	216
BmsI	GCATC	1 cut(s)	85
BpmI	CTGGAG	2 cut(s)	237, 498
Bpu10I	CCTNAGC	1 cut(s)	279
BsaI	GGTCTC	1 cut(s)	44
BsaJI	CCNNGG	2 cut(s)	363, 402
Bsc4I	CCNNNNNNNGG	2 cut(s)	126, 364
Bse3DI	GCAATG	2 cut(s)	183, 511
BseBI	CCWGG	1 cut(s)	216
BseDI	CCNNGG	2 cut(s)	363, 402
BseGI	GGATG	1 cut(s)	499
BseLI	CCNNNNNNNGG	2 cut(s)	126, 364
BseMI	GCAATG	2 cut(s)	183, 511
BseMII	CTCAG	1 cut(s)	293
BseXI	GCAGC	6 cut(s)	25, 195, 198, 251, 394, 431
Bsh1285I	CGRYCG	1 cut(s)	485
BsiEI	CGRYCG	1 cut(s)	485
BslI	CCNNNNNNNGG	2 cut(s)	126, 364
BsmAI	GTCTC	2 cut(s)	44, 68
Bso31I	GGTCTC	1 cut(s)	44
BspACI	CCGC	1 cut(s)	188
BspCNI	CTCAG	1 cut(s)	292
BspLI	GGNNCC	2 cut(s)	220, 356
BspTNI	GGTCTC	1 cut(s)	44
BsrDI	GCAATG	2 cut(s)	183, 511
BssECI	CCNNGG	2 cut(s)	363, 402
BssT1I	CCWWGG	1 cut(s)	402
Bst2UI	CCWGG	1 cut(s)	216
Bst4CI	ACNGT	1 cut(s)	367
BstAPI	GCANNNNNTGC	1 cut(s)	416
BstDEI	CTNAG	1 cut(s)	279
BstDSI	CCRYGG	1 cut(s)	363
BstF5I	GGATG	1 cut(s)	499
BstMAI	GTCTC	2 cut(s)	44, 68
BstMCI	CGRYCG	1 cut(s)	485
BstMWI	GCNNNNNNNGC	2 cut(s)	248, 416
BstNI	CCWGG	1 cut(s)	216
BstSCI	CCNGG	1 cut(s)	214
BstV1I	GCAGC	6 cut(s)	25, 195, 198, 251, 394, 431
BtgI	CCRYGG	1 cut(s)	363
BtrI	CACGTC	1 cut(s)	102
BtsCI	GGATG	1 cut(s)	499
Cfr13I	GGNCC	1 cut(s)	399
CviAII	CATG	2 cut(s)	115, 121
CviJI	RGCY	9 cut(s)	38, 208, 221, 273, 284, 378, 407, 422, 450
CviKI_1	RGCY	9 cut(s)	38, 208, 221, 273, 284, 378, 407, 422, 450
DdeI	CTNAG	1 cut(s)	279
Eco130I	CCWWGG	1 cut(s)	402
Eco31I	GGTCTC	1 cut(s)	44
Eco47I	GGWCC	1 cut(s)	399
EcoRII	CCWGG	1 cut(s)	214
EcoT14I	CCWWGG	1 cut(s)	402
ErhI	CCWWGG	1 cut(s)	402
FaeI	CATG	2 cut(s)	118, 124
FaiI	YATR	8 cut(s)	116, 122, 144, 305, 327, 329, 468, 538
FatI	CATG	2 cut(s)	114, 120
FblI	GTMKAC	1 cut(s)	485
Fnu4HI	GCNGC	6 cut(s)	39, 209, 212, 240, 408, 420
FokI	GGATG	1 cut(s)	506
Fsp4HI	GCNGC	6 cut(s)	39, 209, 212, 240, 408, 420
FspBI	CTAG	1 cut(s)	62
GluI	GCNGC	6 cut(s)	39, 209, 212, 240, 408, 420
GsuI	CTGGAG	2 cut(s)	237, 498
Hin1II	CATG	2 cut(s)	118, 124
HincII	GTYRAC	1 cut(s)	486
HindII	GTYRAC	1 cut(s)	486
HindIII	AAGCTT	1 cut(s)	271
HinfI	GANTC	1 cut(s)	340
HphI	GGTGA	3 cut(s)	242, 347, 379
Hpy166II	GTNNAC	2 cut(s)	370, 486
Hpy188I	TCNGA	1 cut(s)	163
Hpy188III	TCNNGA	2 cut(s)	175, 397
Hpy8I	GTNNAC	2 cut(s)	370, 486
Hpy99I	CGWCG	4 cut(s)	95, 106, 206, 483
HpyAV	CCTTC	1 cut(s)	494
HpyCH4III	ACNGT	1 cut(s)	367
HpyCH4IV	ACGT	1 cut(s)	101
HpyCH4V	TGCA	4 cut(s)	17, 183, 410, 419
HpyF10VI	GCNNNNNNNGC	2 cut(s)	248, 416
HpyF3I	CTNAG	1 cut(s)	279
HpySE526I	ACGT	1 cut(s)	101
Hsp92II	CATG	2 cut(s)	118, 124
LmnI	GCTCC	1 cut(s)	218
LpnPI	CCDG	6 cut(s)	112, 201, 228, 266, 382, 528
Lsp1109I	GCAGC	6 cut(s)	25, 195, 198, 251, 394, 431
LweI	GCATC	1 cut(s)	85
MaeI	CTAG	1 cut(s)	62
MaeII	ACGT	1 cut(s)	101
MaeIII	GTNAC	2 cut(s)	26, 508
MboII	GAAGA	2 cut(s)	265, 268
MluCI	AATT	2 cut(s)	108, 388
MmeI	TCCRAC	1 cut(s)	141
MnlI	CCTC	5 cut(s)	73, 147, 220, 229, 484
MseI	TTAA	2 cut(s)	288, 474
MslI	CAYNNNNRTG	1 cut(s)	119
MspA1I	CMGCKG	1 cut(s)	450
MspR9I	CCNGG	1 cut(s)	216
MvaI	CCWGG	1 cut(s)	216
MwoI	GCNNNNNNNGC	2 cut(s)	248, 416
NlaIII	CATG	2 cut(s)	118, 124
NlaIV	GGNNCC	2 cut(s)	220, 356
NmuCI	GTSAC	1 cut(s)	508
PfeI	GAWTC	1 cut(s)	340
PflMI	CCANNNNNTGG	1 cut(s)	126
PkrI	GCNGC	6 cut(s)	40, 210, 213, 241, 409, 421
Psp6I	CCWGG	1 cut(s)	214
PspGI	CCWGG	1 cut(s)	214
PspN4I	GGNNCC	2 cut(s)	220, 356
PspPI	GGNCC	1 cut(s)	399
PvuII	CAGCTG	1 cut(s)	450
RseI	CAYNNNNRTG	1 cut(s)	119
SalI	GTCGAC	1 cut(s)	484
SaqAI	TTAA	2 cut(s)	288, 474
SatI	GCNGC	6 cut(s)	39, 209, 212, 240, 408, 420
Sau96I	GGNCC	1 cut(s)	399
ScrFI	CCNGG	1 cut(s)	216
SetI	ASST	6 cut(s)	104, 210, 275, 404, 424, 452
SfaNI	GCATC	1 cut(s)	85
SinI	GGWCC	1 cut(s)	399
SmiMI	CAYNNNNRTG	1 cut(s)	119
Sse9I	AATT	2 cut(s)	108, 388
SsiI	CCGC	1 cut(s)	188
SspMI	CTAG	1 cut(s)	62
StyD4I	CCNGG	1 cut(s)	214
StyI	CCWWGG	1 cut(s)	402
TaaI	ACNGT	1 cut(s)	367
TaiI	ACGT	1 cut(s)	104
TaqI	TCGA	4 cut(s)	104, 174, 267, 485
TaqII	GACCGA	1 cut(s)	471
TasI	AATT	2 cut(s)	108, 388
TfiI	GAWTC	1 cut(s)	340
Tru1I	TTAA	2 cut(s)	288, 474
Tru9I	TTAA	2 cut(s)	288, 474
TseFI	GTSAC	1 cut(s)	508
TseI	GCWGC	6 cut(s)	38, 208, 211, 239, 407, 419
Tsp45I	GTSAC	1 cut(s)	508
Van91I	CCANNNNNTGG	1 cut(s)	126
VpaK11BI	GGWCC	1 cut(s)	399
XmiI	GTMKAC	1 cut(s)	485
XspI	CTAG	1 cut(s)	62

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.