RLG00000024768

Protein NRT1 PTR FAMILY

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0001179
Physical Location & Seq
Reverse (-)
38870750 .. 38872095
1346 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000024768

Sequence Viewer

Length: 630 bp
ATGGCTGCAGTTCTGTTGCTGCATGTTTTCCCGTTGCAACAAGTTTTGTGGGTGGACGAAAATGCCCCAAACTTGGAGCTTATAAGACCGTTTCCTTACTGGAATAGATCGATAGCAAGTAGCAATAATTTGGGTGGTGGATTGACATATGCATTGACGTCATTTCTCAATGAGAATTCACCATCAGAATCTGAGCCGTTGACGACGACGCCAGAATCAGATGGTGCTGAGGGGAACAAAGGGGCAGGCTTCTACTGTGAAGCTGTTTTAGGGTTCATACCGACCTCAACCTATAGCAGAATGGACTTGATTCCCATATCCATTAGCTTTATCTTACTAGGTTTTGTATCTTCTCTTGGAAACACTTTCTTCATCGAACAAGCCGTGGACATGAATCACTATGTCGGAAGCTTGTGGGTTCCAATAATTATCCTTTCAATATTCCAACATTCTTACAAGAAGGAAAGACCAATAAATTGTGGTCTTCATCCAAAATTGGGGATTGCATTCTCGATGATATTTGCAATTCTAAGTTGTATCACAGCTGCAAAAGTTGAGACCCGGAGGCTTGGCGTGGTTACAAGTCAGGGTGTGACTGACGAACCCGAGGAAATTAAATCATTCCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PTR2

Protein Analysis

210

Amino Acids

22.95

Weight (kDa)

5.03

Isoelectric Point (pI)

50.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 83
AatII GACGTC 1 cut(s) 161
AcsI RAATTY 1 cut(s) 175
AcyI GRCGYC 2 cut(s) 158, 209
AfiI CCNNNNNNNGG 2 cut(s) 73, 497
AgsI TTSAA 1 cut(s) 438
AluBI AGCT 5 cut(s) 79, 263, 327, 411, 545
AluI AGCT 5 cut(s) 79, 263, 327, 411, 545
Alw26I GTCTC 1 cut(s) 551
AlwNI CAGNNNCTG 1 cut(s) 191
Ama87I CYCGRG 1 cut(s) 605
ApeKI GCWGC 3 cut(s) 5, 19, 545
ApoI RAATTY 1 cut(s) 175
AsuC2I CCSGG 1 cut(s) 562
AsuHPI GGTGA 1 cut(s) 171
AvaI CYCGRG 1 cut(s) 605
BbsI GAAGAC 1 cut(s) 476
BbvCI CCTCAGC 1 cut(s) 228
BbvI GCAGC 2 cut(s) 6, 532
BccI CCATC 2 cut(s) 190, 215
BceAI ACGGC 2 cut(s) 181, 368
BcnI CCSGG 1 cut(s) 562
BcoDI GTCTC 1 cut(s) 551
BfaI CTAG 1 cut(s) 338
BfmI CTRYAG 2 cut(s) 6, 292
BisI GCNGC 3 cut(s) 6, 20, 546
BlsI GCNGC 3 cut(s) 7, 21, 547
Bme1390I CCNGG 1 cut(s) 562
BmeT110I CYCGRG 1 cut(s) 605
BmiI GGNNCC 1 cut(s) 420
BmrFI CCNGG 1 cut(s) 562
BpiI GAAGAC 1 cut(s) 476
Bpu10I CCTNAGC 1 cut(s) 228
BpuMI CCSGG 1 cut(s) 562
Bsa29I ATCGAT 1 cut(s) 110
BsaHI GRCGYC 2 cut(s) 158, 209
BsaI GGTCTC 1 cut(s) 551
BsaJI CCNNGG 2 cut(s) 384, 606
Bsc4I CCNNNNNNNGG 2 cut(s) 73, 497
Bse1I ACTGG 1 cut(s) 104
BseCI ATCGAT 1 cut(s) 110
BseDI CCNNGG 2 cut(s) 384, 606
BseGI GGATG 1 cut(s) 487
BseLI CCNNNNNNNGG 2 cut(s) 73, 497
BseMII CTCAG 2 cut(s) 183, 219
BseNI ACTGG 1 cut(s) 104
BseXI GCAGC 2 cut(s) 6, 532
BshVI ATCGAT 1 cut(s) 110
BsiHKCI CYCGRG 1 cut(s) 605
BsiSI CCGG 1 cut(s) 562
BslI CCNNNNNNNGG 2 cut(s) 73, 497
BsmAI GTCTC 1 cut(s) 551
BsmI GAATGC 1 cut(s) 506
Bso31I GGTCTC 1 cut(s) 551
BsoBI CYCGRG 1 cut(s) 605
Bsp143I GATC 1 cut(s) 107
BspCNI CTCAG 2 cut(s) 184, 220
BspDI ATCGAT 1 cut(s) 110
BspLI GGNNCC 1 cut(s) 420
BspMAI CTGCAG 1 cut(s) 10
BspTNI GGTCTC 1 cut(s) 551
BsrI ACTGG 1 cut(s) 104
BssECI CCNNGG 2 cut(s) 384, 606
BssMI GATC 1 cut(s) 107
BssNI GRCGYC 2 cut(s) 158, 209
Bst4CI ACNGT 2 cut(s) 90, 257
BstACI GRCGYC 2 cut(s) 158, 209
BstC8I GCNNGC 1 cut(s) 247
BstDEI CTNAG 3 cut(s) 192, 228, 530
BstDSI CCRYGG 1 cut(s) 384
BstF5I GGATG 1 cut(s) 487
BstKTI GATC 1 cut(s) 110
BstMAI GTCTC 1 cut(s) 551
BstMBI GATC 1 cut(s) 107
BstNSI RCATGY 1 cut(s) 26
BstSCI CCNGG 1 cut(s) 560
BstSFI CTRYAG 2 cut(s) 6, 292
BstV1I GCAGC 2 cut(s) 6, 532
BstV2I GAAGAC 1 cut(s) 476
Bsu15I ATCGAT 1 cut(s) 110
BsuTUI ATCGAT 1 cut(s) 110
BtgI CCRYGG 1 cut(s) 384
BtsCI GGATG 1 cut(s) 487
Cac8I GCNNGC 1 cut(s) 247
CaiI CAGNNNCTG 1 cut(s) 191
ClaI ATCGAT 1 cut(s) 110
CseI GACGC 1 cut(s) 217
CspCI CAANNNNNGTGG 2 cut(s) 29, 64
CviAII CATG 3 cut(s) 23, 391, 627
DdeI CTNAG 3 cut(s) 192, 228, 530
DpnI GATC 1 cut(s) 109
DpnII GATC 1 cut(s) 107
Eco31I GGTCTC 1 cut(s) 551
Eco88I CYCGRG 1 cut(s) 605
EcoRI GAATTC 1 cut(s) 175
EcoT22I ATGCAT 1 cut(s) 154
FaeI CATG 3 cut(s) 26, 394, 630
FatI CATG 3 cut(s) 22, 390, 626
FauNDI CATATG 1 cut(s) 148
Fnu4HI GCNGC 3 cut(s) 6, 20, 546
FokI GGATG 1 cut(s) 474
Fsp4HI GCNGC 3 cut(s) 6, 20, 546
FspBI CTAG 1 cut(s) 338
GluI GCNGC 3 cut(s) 6, 20, 546
HapII CCGG 1 cut(s) 562
HgaI GACGC 1 cut(s) 217
Hin1I GRCGYC 2 cut(s) 158, 209
Hin1II CATG 3 cut(s) 26, 394, 630
HincII GTYRAC 1 cut(s) 201
HindII GTYRAC 1 cut(s) 201
HindIII AAGCTT 1 cut(s) 409
HinfI GANTC 4 cut(s) 188, 215, 310, 394
HpaII CCGG 1 cut(s) 562
HphI GGTGA 1 cut(s) 171
Hpy166II GTNNAC 3 cut(s) 55, 201, 388
Hpy188I TCNGA 4 cut(s) 187, 193, 220, 407
Hpy188III TCNNGA 1 cut(s) 511
Hpy8I GTNNAC 3 cut(s) 55, 201, 388
Hpy99I CGWCG 2 cut(s) 208, 211
HpyAV CCTTC 1 cut(s) 454
HpyCH4III ACNGT 2 cut(s) 90, 257
HpyCH4IV ACGT 1 cut(s) 158
HpyCH4V TGCA 7 cut(s) 8, 22, 37, 152, 506, 524, 548
HpyF3I CTNAG 3 cut(s) 192, 228, 530
HpySE526I ACGT 1 cut(s) 158
Hsp92I GRCGYC 2 cut(s) 158, 209
Hsp92II CATG 3 cut(s) 26, 394, 630
Kzo9I GATC 1 cut(s) 107
LmnI GCTCC 1 cut(s) 76
LpnPI CCDG 5 cut(s) 85, 225, 231, 572, 575
Lsp1109I GCAGC 2 cut(s) 6, 532
MaeI CTAG 1 cut(s) 338
MaeII ACGT 1 cut(s) 158
MaeIII GTNAC 2 cut(s) 577, 592
MalI GATC 1 cut(s) 109
MboI GATC 1 cut(s) 107
MboII GAAGA 3 cut(s) 342, 361, 476
MluCI AATT 7 cut(s) 127, 175, 426, 475, 494, 525, 612
MmeI TCCRAC 2 cut(s) 385, 469
MnlI CCTC 4 cut(s) 223, 295, 558, 601
Mph1103I ATGCAT 1 cut(s) 154
MseI TTAA 1 cut(s) 615
MslI CAYNNNNRTG 1 cut(s) 625
MspA1I CMGCKG 1 cut(s) 545
MspI CCGG 1 cut(s) 562
MspR9I CCNGG 1 cut(s) 562
Mva1269I GAATGC 1 cut(s) 506
NciI CCSGG 1 cut(s) 562
NdeI CATATG 1 cut(s) 148
NdeII GATC 1 cut(s) 107
NlaIII CATG 3 cut(s) 26, 394, 630
NlaIV GGNNCC 1 cut(s) 420
NmuCI GTSAC 1 cut(s) 592
NsiI ATGCAT 1 cut(s) 154
NspI RCATGY 1 cut(s) 26
PcsI WCGNNNNNNNCGW 1 cut(s) 381
PctI GAATGC 1 cut(s) 506
PfeI GAWTC 4 cut(s) 188, 215, 310, 394
PkrI GCNGC 3 cut(s) 7, 21, 547
PsiI TTATAA 1 cut(s) 83
PspN4I GGNNCC 1 cut(s) 420
PstI CTGCAG 1 cut(s) 10
PstNI CAGNNNCTG 1 cut(s) 191
PvuII CAGCTG 1 cut(s) 545
RseI CAYNNNNRTG 1 cut(s) 625
SaqAI TTAA 1 cut(s) 615
SatI GCNGC 3 cut(s) 6, 20, 546
Sau3AI GATC 1 cut(s) 107
ScrFI CCNGG 1 cut(s) 562
SetI ASST 9 cut(s) 81, 161, 265, 287, 293, 329, 343, 413, 547
SfcI CTRYAG 2 cut(s) 6, 292
SmiMI CAYNNNNRTG 1 cut(s) 625
Sse9I AATT 7 cut(s) 127, 175, 426, 475, 494, 525, 612
SspI AATATT 1 cut(s) 441
SspMI CTAG 1 cut(s) 338
StyD4I CCNGG 1 cut(s) 560
TaaI ACNGT 2 cut(s) 90, 257
TaiI ACGT 1 cut(s) 161
TaqI TCGA 3 cut(s) 110, 375, 512
TasI AATT 7 cut(s) 127, 175, 426, 475, 494, 525, 612
TfiI GAWTC 4 cut(s) 188, 215, 310, 394
Tru1I TTAA 1 cut(s) 615
Tru9I TTAA 1 cut(s) 615
TseFI GTSAC 1 cut(s) 592
TseI GCWGC 3 cut(s) 5, 19, 545
Tsp45I GTSAC 1 cut(s) 592
TspDTI ATGAA 4 cut(s) 265, 361, 407, 476
XapI RAATTY 1 cut(s) 175
XceI RCATGY 1 cut(s) 26
XspI CTAG 1 cut(s) 338
ZraI GACGTC 1 cut(s) 159
Zsp2I ATGCAT 1 cut(s) 154
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.