Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0001179

Physical Location & Seq

Genomic Coordinates Forward (+)

16763904 .. 16766219

Gene Structure 2316 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g23670.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

ATGTTCAAAGAGATCCTGCCAAGAACGCGTACCAAATGCTGGGTCGACTTTTGTATTCGGATTGCTCCACGTAAAGGGACTTCCTCTAAAGTCCAGCTTAATGAGTTCATGGTGTATAACGACATCACGAAACCCTTGCATCTGTTTCTCCAATCGAACCCTCCACCCTGTTTTCTTTCCGGCAAGCATTATCTCATTGAAGTGAATGAAGTCTCCTATTACCACAGTGCACCCAGTGGAATCGAGTCCACAACATCCAGTTCATGTAACAAATGCCAAGTACGCCCTTCAGTTTGTGTAAAGCGCCATGATGGCGTCACTCCTCCCACATTCACATCGATCATAGAAGAAGTGGGAGAAGGAGGAGAAGTGGGAGAAGATGAAGATGGGGTCTTTGCGGAAGGAGCCGAAGAGGTTGTCGACGGAGCGGGAATTGTAGTCGTCGCCATAAAAGAAGTCGTCGTCGAGGGTTCCGATACGGGTGAGGAGGCGGCGAGGTTGAGGTGGGAGAGGAGGAGGAGTCTACGGGGGTGGGGGAAGATCGGGAGGCGGCGAGGTCGAGGCGGGAGAGGAGGGGGAGTCTGGGGGGGTGGGGGAAGATCTGGAGGCGACGAGGTCGAGACGGGAGAGGAGGGACTTGAGGGAGGGGTCGCGGTCGATAAAGGCGGTGAGGAGGTGGGTGCCATTTTCGATGACGGTGCGGAAGGAGAAGATGAGGAGGGAGAGGAAGAGGAAGGTGAGGAGGTTGGAGGTGGAGAAGGAGAAGGTTTTGTTTGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

260

Amino Acids

27.73

Weight (kDa)

4.65

Isoelectric Point (pI)

55.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001179)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38100 AT2G38100 AT2G38100
fragaria_vesca	FvH4_1g04590 FvH4_1g04590 FvH4_1g04590 FvH4_1g04640 FvH4_1g04640 FvH4_3g23670 FvH4_3g33690 FvH4_4g15600 FvH4_6g11880 FvH4_6g11890 FvH4_6g14971
malus_domestica	MD04G1148300.v1.1 MD12G1161800.v1.1 MD12G1161900.v1.1
prunus_persica	Prupe.6G272300_v2.0.a1 Prupe.6G272400_v2.0.a1 Prupe.6G272500_v2.0.a1 Prupe.6G272600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0061211 RchiOBHm_Chr5g0061221
rosa_laevigata	RLG00000000900 RLG00000002937 RLG00000002938 RLG00000009412 RLG00000019147 RLG00000024767 RLG00000024768 RLG00000035442
rosa_multiflora	Rmu_co8428917.1_g000001 Rmu_sc0001366.1_g000006 Rmu_sc0003267.1_g000026 Rmu_sc0008843.1_g000001
rosa_roxburghii	Rroxscaffold_1G00019490 Rroxscaffold_1G00019500
rosa_rugosa	Rorug03G0066600 Rorug03G0094900 Rorug05G0338700 Rorug05G0338800 Rorug05G0338900 Rorug07G0130600
rosa_samantha	Rh2DG376900 Rh3BG128300 Rh3CG130500 Rh3DG128900 Rh3DG164700 Rh4DG298600 Rh5AG399700 Rh5AG400000 Rh5BG412700 Rh5CG437400 Rh5DG427100
rosa_wichuraiana	Rw3G013480 Rw5G037690 Rw7G022480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	680
AccB7I	CCANNNNNTGG	1 cut(s)	39
AccBSI	CCGCTC	1 cut(s)	428
AccI	GTMKAC	3 cut(s)	45, 420, 523
AccII	CGCG	2 cut(s)	28, 653
AciI	CCGC	8 cut(s)	398, 428, 491, 550, 564, 653, 666, 701
AclWI	GGATC	1 cut(s)	7
AcuI	CTGAAG	1 cut(s)	273
AcyI	GRCGYC	1 cut(s)	315
AdeI	CACNNNGTG	1 cut(s)	236
AfaI	GTAC	2 cut(s)	31, 282
AfiI	CCNNNNNNNGG	2 cut(s)	39, 74
AflIII	ACRYGT	1 cut(s)	26
AgsI	TTSAA	2 cut(s)	7, 200
AluBI	AGCT	1 cut(s)	97
AluI	AGCT	1 cut(s)	97
Alw21I	GWGCWC	1 cut(s)	232
Alw26I	GTCTC	2 cut(s)	217, 614
Alw44I	GTGCAC	1 cut(s)	228
AlwI	GGATC	1 cut(s)	7
ApaLI	GTGCAC	1 cut(s)	228
ArsI	GACNNNNNNTTYG	4 cut(s)	27, 59, 402, 434
AspLEI	GCGC	1 cut(s)	306
AsuHPI	GGTGA	3 cut(s)	494, 680, 749
BaeGI	GKGCMC	1 cut(s)	232
BanI	GGYRCC	1 cut(s)	680
BarI	GAAGNNNNNNTAC	2 cut(s)	64, 96
Bbv12I	GWGCWC	1 cut(s)	232
BccI	CCATC	2 cut(s)	305, 380
BcgI	CGANNNNNNTGC	4 cut(s)	118, 152, 680, 714
BcoDI	GTCTC	2 cut(s)	217, 614
BfoI	RGCGCY	1 cut(s)	307
BglI	GCCNNNNNGGC	1 cut(s)	312
BglII	AGATCT	1 cut(s)	599
BisI	GCNGC	2 cut(s)	492, 551
BlsI	GCNGC	2 cut(s)	493, 552
BmiI	GGNNCC	3 cut(s)	406, 472, 682
BmrI	ACTGGG	1 cut(s)	228
BmsI	GCATC	1 cut(s)	148
BmuI	ACTGGG	1 cut(s)	228
BpmI	CTGGAG	1 cut(s)	624
BpuEI	CTTGAG	1 cut(s)	659
Bsa29I	ATCGAT	1 cut(s)	338
BsaAI	YACGTR	1 cut(s)	71
BsaHI	GRCGYC	1 cut(s)	315
BsaXI	ACNNNNNCTCC	6 cut(s)	354, 384, 505, 535, 564, 594
Bsc4I	CCNNNNNNNGG	2 cut(s)	39, 74
Bse1I	ACTGG	2 cut(s)	234, 258
BseCI	ATCGAT	1 cut(s)	338
BseGI	GGATG	1 cut(s)	254
BseLI	CCNNNNNNNGG	2 cut(s)	39, 74
BseNI	ACTGG	2 cut(s)	234, 258
BseSI	GKGCMC	1 cut(s)	232
BseYI	CCCAGC	1 cut(s)	39
Bsh1236I	CGCG	2 cut(s)	28, 653
Bsh1285I	CGRYCG	1 cut(s)	657
BshNI	GGYRCC	1 cut(s)	680
BshVI	ATCGAT	1 cut(s)	338
BsiEI	CGRYCG	1 cut(s)	657
BsiHKAI	GWGCWC	1 cut(s)	232
BsiSI	CCGG	1 cut(s)	180
BslFI	GGGAC	2 cut(s)	91, 648
BslI	CCNNNNNNNGG	2 cut(s)	39, 74
BsmAI	GTCTC	2 cut(s)	217, 614
BsmBI	CGTCTC	1 cut(s)	614
BsmFI	GGGAC	2 cut(s)	91, 648
Bsp1286I	GDGCHC	1 cut(s)	232
Bsp143I	GATC	4 cut(s)	12, 339, 540, 599
BspACI	CCGC	8 cut(s)	398, 428, 491, 550, 564, 653, 666, 701
BspDI	ATCGAT	1 cut(s)	338
BspFNI	CGCG	2 cut(s)	28, 653
BspLI	GGNNCC	3 cut(s)	406, 472, 682
BspPI	GGATC	1 cut(s)	7
BspT107I	GGYRCC	1 cut(s)	680
BsrBI	CCGCTC	1 cut(s)	428
BsrI	ACTGG	2 cut(s)	234, 258
BssMI	GATC	4 cut(s)	12, 339, 540, 599
BssNI	GRCGYC	1 cut(s)	315
Bst4CI	ACNGT	2 cut(s)	227, 698
Bst6I	CTCTTC	2 cut(s)	405, 723
BstACI	GRCGYC	1 cut(s)	315
BstBAI	YACGTR	1 cut(s)	71
BstC8I	GCNNGC	1 cut(s)	185
BstF5I	GGATG	1 cut(s)	254
BstFNI	CGCG	2 cut(s)	28, 653
BstH2I	RGCGCY	1 cut(s)	307
BstHHI	GCGC	1 cut(s)	306
BstKTI	GATC	4 cut(s)	15, 342, 543, 602
BstMAI	GTCTC	2 cut(s)	217, 614
BstMBI	GATC	4 cut(s)	12, 339, 540, 599
BstMCI	CGRYCG	1 cut(s)	657
BstMWI	GCNNNNNNNGC	4 cut(s)	25, 282, 312, 404
BstSLI	GKGCMC	1 cut(s)	232
BstUI	CGCG	2 cut(s)	28, 653
BstX2I	RGATCY	2 cut(s)	12, 599
BstYI	RGATCY	2 cut(s)	12, 599
Bsu15I	ATCGAT	1 cut(s)	338
BsuTUI	ATCGAT	1 cut(s)	338
BtsCI	GGATG	1 cut(s)	254
BtsIMutI	CAGTG	2 cut(s)	232, 241
Cac8I	GCNNGC	1 cut(s)	185
CfoI	GCGC	1 cut(s)	306
ClaI	ATCGAT	1 cut(s)	338
CseI	GACGC	1 cut(s)	304
Csp6I	GTAC	2 cut(s)	30, 281
CviAII	CATG	3 cut(s)	109, 264, 308
CviJI	RGCY	2 cut(s)	97, 407
CviKI_1	RGCY	2 cut(s)	97, 407
CviQI	GTAC	2 cut(s)	30, 281
DpnI	GATC	4 cut(s)	14, 341, 542, 601
DpnII	GATC	4 cut(s)	12, 339, 540, 599
DraIII	CACNNNGTG	1 cut(s)	236
Eam1104I	CTCTTC	2 cut(s)	405, 723
EarI	CTCTTC	2 cut(s)	405, 723
Eco57I	CTGAAG	1 cut(s)	273
Esp3I	CGTCTC	1 cut(s)	614
FaeI	CATG	3 cut(s)	112, 267, 311
FaiI	YATR	6 cut(s)	110, 117, 265, 309, 344, 449
FalI	AAGNNNNNCTT	2 cut(s)	81, 113
FaqI	GGGAC	2 cut(s)	91, 648
FatI	CATG	3 cut(s)	108, 263, 307
FauI	CCCGC	2 cut(s)	421, 557
FblI	GTMKAC	3 cut(s)	45, 420, 523
Fnu4HI	GCNGC	2 cut(s)	492, 551
FokI	GGATG	1 cut(s)	241
Fsp4HI	GCNGC	2 cut(s)	492, 551
GlaI	GCGC	1 cut(s)	305
GluI	GCNGC	2 cut(s)	492, 551
GsaI	CCCAGC	1 cut(s)	43
GsuI	CTGGAG	1 cut(s)	624
HaeII	RGCGCY	1 cut(s)	307
HapII	CCGG	1 cut(s)	180
HgaI	GACGC	1 cut(s)	304
HhaI	GCGC	1 cut(s)	306
Hin1I	GRCGYC	1 cut(s)	315
Hin1II	CATG	3 cut(s)	112, 267, 311
Hin6I	GCGC	1 cut(s)	304
HinP1I	GCGC	1 cut(s)	304
HincII	GTYRAC	2 cut(s)	46, 421
HindII	GTYRAC	2 cut(s)	46, 421
HinfI	GANTC	4 cut(s)	240, 245, 520, 579
HpaII	CCGG	1 cut(s)	180
HphI	GGTGA	3 cut(s)	494, 680, 749
Hpy166II	GTNNAC	5 cut(s)	46, 230, 249, 421, 524
Hpy188I	TCNGA	2 cut(s)	60, 475
Hpy188III	TCNNGA	4 cut(s)	127, 544, 603, 619
Hpy8I	GTNNAC	5 cut(s)	46, 230, 249, 421, 524
Hpy99I	CGWCG	5 cut(s)	425, 446, 464, 467, 614
HpyAV	CCTTC	7 cut(s)	297, 353, 395, 698, 728, 752, 758
HpyCH4III	ACNGT	2 cut(s)	227, 698
HpyCH4IV	ACGT	1 cut(s)	70
HpyCH4V	TGCA	2 cut(s)	139, 230
HpyF10VI	GCNNNNNNNGC	4 cut(s)	25, 282, 312, 404
HpySE526I	ACGT	1 cut(s)	70
Hsp92I	GRCGYC	1 cut(s)	315
Hsp92II	CATG	3 cut(s)	112, 267, 311
HspAI	GCGC	1 cut(s)	304
Kzo9I	GATC	4 cut(s)	12, 339, 540, 599
LmnI	GCTCC	3 cut(s)	70, 404, 425
LpnPI	CCDG	9 cut(s)	25, 29, 107, 181, 193, 247, 271, 568, 588
LweI	GCATC	1 cut(s)	148
MaeII	ACGT	1 cut(s)	70
MaeIII	GTNAC	2 cut(s)	266, 316
MalI	GATC	4 cut(s)	14, 341, 542, 601
MbiI	CCGCTC	1 cut(s)	428
MboI	GATC	4 cut(s)	12, 339, 540, 599
MboII	GAAGA	8 cut(s)	359, 389, 395, 422, 550, 609, 722, 740
MflI	RGATCY	2 cut(s)	12, 599
MhlI	GDGCHC	1 cut(s)	232
MluCI	AATT	1 cut(s)	432
MluI	ACGCGT	1 cut(s)	26
MlyI	GAGTC	3 cut(s)	254, 529, 588
MmeI	TCCRAC	1 cut(s)	727
MseI	TTAA	1 cut(s)	99
MslI	CAYNNNNRTG	1 cut(s)	200
MspI	CCGG	1 cut(s)	180
MvnI	CGCG	2 cut(s)	28, 653
MwoI	GCNNNNNNNGC	4 cut(s)	25, 282, 312, 404
NdeII	GATC	4 cut(s)	12, 339, 540, 599
NlaIII	CATG	3 cut(s)	112, 267, 311
NlaIV	GGNNCC	3 cut(s)	406, 472, 682
NmuCI	GTSAC	1 cut(s)	316
PcsI	WCGNNNNNNNCGW	1 cut(s)	471
PfeI	GAWTC	1 cut(s)	240
PflFI	GACNNNGTC	1 cut(s)	614
PflMI	CCANNNNNTGG	1 cut(s)	39
PkrI	GCNGC	2 cut(s)	493, 552
PleI	GAGTC	3 cut(s)	253, 528, 587
PpsI	GAGTC	3 cut(s)	253, 528, 587
Ppu21I	YACGTR	1 cut(s)	71
PspFI	CCCAGC	1 cut(s)	39
PspN4I	GGNNCC	3 cut(s)	406, 472, 682
PsuI	RGATCY	2 cut(s)	12, 599
PsyI	GACNNNGTC	1 cut(s)	614
RsaI	GTAC	2 cut(s)	31, 282
RsaNI	GTAC	2 cut(s)	30, 281
RseI	CAYNNNNRTG	1 cut(s)	200
SalI	GTCGAC	2 cut(s)	44, 419
SaqAI	TTAA	1 cut(s)	99
SatI	GCNGC	2 cut(s)	492, 551
Sau3AI	GATC	4 cut(s)	12, 339, 540, 599
SchI	GAGTC	3 cut(s)	254, 529, 588
SduI	GDGCHC	1 cut(s)	232
SfaNI	GCATC	1 cut(s)	148
SmiMI	CAYNNNNRTG	1 cut(s)	200
SmlI	CTYRAG	1 cut(s)	638
SmoI	CTYRAG	1 cut(s)	638
Sse9I	AATT	1 cut(s)	432
SsiI	CCGC	8 cut(s)	398, 428, 491, 550, 564, 653, 666, 701
TaaI	ACNGT	2 cut(s)	227, 698
TaiI	ACGT	1 cut(s)	73
TasI	AATT	1 cut(s)	432
TauI	GCSGC	2 cut(s)	494, 553
TfiI	GAWTC	1 cut(s)	240
Tru1I	TTAA	1 cut(s)	99
Tru9I	TTAA	1 cut(s)	99
TscAI	CASTG	2 cut(s)	232, 241
TseFI	GTSAC	1 cut(s)	316
Tsp45I	GTSAC	1 cut(s)	316
TspDTI	ATGAA	4 cut(s)	97, 222, 252, 396
TspGWI	ACGGA	1 cut(s)	438
TspRI	CASTG	2 cut(s)	232, 241
Tth111I	GACNNNGTC	1 cut(s)	614
Van91I	CCANNNNNTGG	1 cut(s)	39
VneI	GTGCAC	1 cut(s)	228
XmiI	GTMKAC	3 cut(s)	45, 420, 523

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.