Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0001179

Physical Location & Seq

Genomic Coordinates Forward (+)

24305238 .. 24307003

Gene Structure 1766 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1161800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGGAGGAGAAACCAGGAAGAGGATCCTTTCCGGAGGATCTAGAGCCATTCATCGTATATCGTGCTGGGTTTGGTCTTTTGACAATGTCAACACCACCTGTCCTTGCTGTAGTAACAGGCCGTTGCAGCTCATTTGTGCCCCAGTGCATTGGCTTAGTCCATAAAAATCTCTTTTACACAGCATTGCTTCTATTAGCTATTGGAGTGTCGACTCACTCGTCCTCCTTGCCTCGGTTCAAAGAGGACCAGTTCCAGTTCACAACAAAAAAGCATTACAAGTCATGTTCATGGCAGCAGTTCTCGTATGTGACACTAGCCTTCGTCGTCCCTGCTGTTACCGTTTATGCAGTTGGTTATTCGAAGTCTTGGTTGATTAAGTTTGGGACAGGAGCATTAACTACCGTGTGGACGTTGGAGCTATCTTACTGGAATTTTTGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PTR2

Protein Analysis

147

Amino Acids

16.38

Weight (kDa)

8.93

Isoelectric Point (pI)

33.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001179)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38100 AT2G38100 AT2G38100
fragaria_vesca	FvH4_1g04590 FvH4_1g04590 FvH4_1g04590 FvH4_1g04640 FvH4_1g04640 FvH4_3g23670 FvH4_3g33690 FvH4_4g15600 FvH4_6g11880 FvH4_6g11890 FvH4_6g14971
malus_domestica	MD04G1148300.v1.1 MD12G1161800.v1.1 MD12G1161900.v1.1
prunus_persica	Prupe.6G272300_v2.0.a1 Prupe.6G272400_v2.0.a1 Prupe.6G272500_v2.0.a1 Prupe.6G272600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0061211 RchiOBHm_Chr5g0061221
rosa_laevigata	RLG00000000900 RLG00000002937 RLG00000002938 RLG00000009412 RLG00000019147 RLG00000024767 RLG00000024768 RLG00000035442
rosa_multiflora	Rmu_co8428917.1_g000001 Rmu_sc0001366.1_g000006 Rmu_sc0003267.1_g000026 Rmu_sc0008843.1_g000001
rosa_roxburghii	Rroxscaffold_1G00019490 Rroxscaffold_1G00019500
rosa_rugosa	Rorug03G0066600 Rorug03G0094900 Rorug05G0338700 Rorug05G0338800 Rorug05G0338900 Rorug07G0130600
rosa_samantha	Rh2DG376900 Rh3BG128300 Rh3CG130500 Rh3DG128900 Rh3DG164700 Rh4DG298600 Rh5AG399700 Rh5AG400000 Rh5BG412700 Rh5CG437400 Rh5DG427100
rosa_wichuraiana	Rw3G013480 Rw5G037690 Rw7G022480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	217
AccI	GTMKAC	1 cut(s)	209
AccIII	TCCGGA	1 cut(s)	31
AclWI	GGATC	3 cut(s)	18, 31, 45
AcsI	RAATTY	1 cut(s)	430
AfiI	CCNNNNNNNGG	2 cut(s)	20, 231
AgsI	TTSAA	1 cut(s)	238
AjnI	CCWGG	1 cut(s)	13
AluBI	AGCT	3 cut(s)	129, 197, 418
AluI	AGCT	3 cut(s)	129, 197, 418
AlwI	GGATC	3 cut(s)	18, 31, 45
Aor13HI	TCCGGA	1 cut(s)	31
AoxI	GGCC	1 cut(s)	118
ApeKI	GCWGC	2 cut(s)	126, 292
ApoI	RAATTY	1 cut(s)	430
AspS9I	GGNCC	1 cut(s)	244
AsuII	TTCGAA	1 cut(s)	359
AvaII	GGWCC	1 cut(s)	244
BaeGI	GKGCMC	1 cut(s)	141
BamHI	GGATCC	1 cut(s)	23
BbvI	GCAGC	2 cut(s)	138, 304
BceAI	ACGGC	1 cut(s)	105
BciT130I	CCWGG	1 cut(s)	15
BfaI	CTAG	2 cut(s)	41, 314
BfmI	CTRYAG	1 cut(s)	108
BisI	GCNGC	2 cut(s)	127, 293
BlsI	GCNGC	2 cut(s)	128, 294
Bme1390I	CCNGG	1 cut(s)	15
Bme18I	GGWCC	1 cut(s)	244
BmgT120I	GGNCC	1 cut(s)	244
BmiI	GGNNCC	1 cut(s)	25
BmrFI	CCNGG	1 cut(s)	15
BmrI	ACTGGG	1 cut(s)	136
BmuI	ACTGGG	1 cut(s)	136
Bpu14I	TTCGAA	1 cut(s)	359
BsaJI	CCNNGG	1 cut(s)	230
BsaWI	WCCGGW	1 cut(s)	31
BsaXI	ACNNNNNCTCC	2 cut(s)	206, 236
Bsc4I	CCNNNNNNNGG	2 cut(s)	20, 231
Bse1I	ACTGG	4 cut(s)	142, 247, 253, 431
Bse3DI	GCAATG	1 cut(s)	182
BseAI	TCCGGA	1 cut(s)	31
BseBI	CCWGG	1 cut(s)	15
BseDI	CCNNGG	1 cut(s)	230
BseLI	CCNNNNNNNGG	2 cut(s)	20, 231
BseMI	GCAATG	1 cut(s)	182
BseNI	ACTGG	4 cut(s)	142, 247, 253, 431
BseRI	GAGGAG	1 cut(s)	20
BseSI	GKGCMC	1 cut(s)	141
BseXI	GCAGC	2 cut(s)	138, 304
BseYI	CCCAGC	1 cut(s)	65
BshFI	GGCC	1 cut(s)	120
BsiSI	CCGG	1 cut(s)	32
BslFI	GGGAC	2 cut(s)	311, 397
BslI	CCNNNNNNNGG	2 cut(s)	20, 231
BsmFI	GGGAC	2 cut(s)	311, 397
BsnI	GGCC	1 cut(s)	120
Bsp119I	TTCGAA	1 cut(s)	359
Bsp1286I	GDGCHC	1 cut(s)	141
Bsp13I	TCCGGA	1 cut(s)	31
Bsp143I	GATC	2 cut(s)	23, 37
BspANI	GGCC	1 cut(s)	120
BspEI	TCCGGA	1 cut(s)	31
BspLI	GGNNCC	1 cut(s)	25
BspPI	GGATC	3 cut(s)	18, 31, 45
BspT104I	TTCGAA	1 cut(s)	359
BsrDI	GCAATG	1 cut(s)	182
BsrI	ACTGG	4 cut(s)	142, 247, 253, 431
BssECI	CCNNGG	1 cut(s)	230
BssMI	GATC	2 cut(s)	23, 37
Bst2UI	CCWGG	1 cut(s)	15
Bst4CI	ACNGT	2 cut(s)	340, 403
Bst6I	CTCTTC	1 cut(s)	13
BstBI	TTCGAA	1 cut(s)	359
BstDEI	CTNAG	1 cut(s)	154
BstKTI	GATC	2 cut(s)	26, 40
BstMBI	GATC	2 cut(s)	23, 37
BstMWI	GCNNNNNNNGC	1 cut(s)	126
BstNI	CCWGG	1 cut(s)	15
BstSCI	CCNGG	1 cut(s)	13
BstSFI	CTRYAG	1 cut(s)	108
BstSLI	GKGCMC	1 cut(s)	141
BstV1I	GCAGC	2 cut(s)	138, 304
BstX2I	RGATCY	2 cut(s)	23, 37
BstXI	CCANNNNNNTGG	1 cut(s)	149
BstYI	RGATCY	2 cut(s)	23, 37
BsuRI	GGCC	1 cut(s)	120
BtsIMutI	CAGTG	1 cut(s)	149
Cfr13I	GGNCC	1 cut(s)	244
CviAII	CATG	2 cut(s)	282, 288
CviJI	RGCY	7 cut(s)	46, 120, 129, 153, 197, 317, 418
CviKI_1	RGCY	7 cut(s)	46, 120, 129, 153, 197, 317, 418
DdeI	CTNAG	1 cut(s)	154
DpnI	GATC	2 cut(s)	25, 39
DpnII	GATC	2 cut(s)	23, 37
DrdI	GACNNNNNNGTC	1 cut(s)	217
DseDI	GACNNNNNNGTC	1 cut(s)	217
Eam1104I	CTCTTC	1 cut(s)	13
EarI	CTCTTC	1 cut(s)	13
Eco47I	GGWCC	1 cut(s)	244
EcoRII	CCWGG	1 cut(s)	13
FaeI	CATG	2 cut(s)	285, 291
FaiI	YATR	6 cut(s)	58, 162, 283, 289, 306, 345
FaqI	GGGAC	2 cut(s)	311, 397
FatI	CATG	2 cut(s)	281, 287
FblI	GTMKAC	1 cut(s)	209
Fnu4HI	GCNGC	2 cut(s)	127, 293
Fsp4HI	GCNGC	2 cut(s)	127, 293
FspBI	CTAG	2 cut(s)	41, 314
GluI	GCNGC	2 cut(s)	127, 293
GsaI	CCCAGC	1 cut(s)	69
HaeIII	GGCC	1 cut(s)	120
HapII	CCGG	1 cut(s)	32
Hin1II	CATG	2 cut(s)	285, 291
HincII	GTYRAC	2 cut(s)	90, 210
HindII	GTYRAC	2 cut(s)	90, 210
HinfI	GANTC	1 cut(s)	211
HpaII	CCGG	1 cut(s)	32
Hpy166II	GTNNAC	4 cut(s)	90, 210, 258, 408
Hpy188III	TCNNGA	2 cut(s)	32, 41
Hpy8I	GTNNAC	4 cut(s)	90, 210, 258, 408
Hpy99I	CGWCG	1 cut(s)	326
HpyAV	CCTTC	1 cut(s)	328
HpyCH4III	ACNGT	2 cut(s)	340, 403
HpyCH4IV	ACGT	1 cut(s)	410
HpyCH4V	TGCA	3 cut(s)	126, 147, 347
HpyF10VI	GCNNNNNNNGC	1 cut(s)	126
HpyF3I	CTNAG	1 cut(s)	154
HpySE526I	ACGT	1 cut(s)	410
Hsp92II	CATG	2 cut(s)	285, 291
Kpn2I	TCCGGA	1 cut(s)	31
Kzo9I	GATC	2 cut(s)	23, 37
LmnI	GCTCC	2 cut(s)	389, 415
Lsp1109I	GCAGC	2 cut(s)	138, 304
MaeI	CTAG	2 cut(s)	41, 314
MaeII	ACGT	1 cut(s)	410
MaeIII	GTNAC	3 cut(s)	112, 307, 334
MalI	GATC	2 cut(s)	25, 39
MboI	GATC	2 cut(s)	23, 37
MboII	GAAGA	1 cut(s)	30
MflI	RGATCY	2 cut(s)	23, 37
MhlI	GDGCHC	1 cut(s)	141
MluCI	AATT	1 cut(s)	430
MlyI	GAGTC	1 cut(s)	205
MmeI	TCCRAC	1 cut(s)	393
MnlI	CCTC	5 cut(s)	14, 28, 232, 235, 240
MroI	TCCGGA	1 cut(s)	31
MseI	TTAA	2 cut(s)	375, 395
MslI	CAYNNNNRTG	1 cut(s)	286
MspI	CCGG	1 cut(s)	32
MspR9I	CCNGG	1 cut(s)	15
MvaI	CCWGG	1 cut(s)	15
MwoI	GCNNNNNNNGC	1 cut(s)	126
NdeII	GATC	2 cut(s)	23, 37
NlaIII	CATG	2 cut(s)	285, 291
NlaIV	GGNNCC	1 cut(s)	25
NmuCI	GTSAC	1 cut(s)	307
NspV	TTCGAA	1 cut(s)	359
PcsI	WCGNNNNNNNCGW	1 cut(s)	215
PflFI	GACNNNGTC	1 cut(s)	85
PkrI	GCNGC	2 cut(s)	128, 294
PleI	GAGTC	1 cut(s)	205
PpsI	GAGTC	1 cut(s)	205
Psp6I	CCWGG	1 cut(s)	13
PspFI	CCCAGC	1 cut(s)	65
PspGI	CCWGG	1 cut(s)	13
PspN4I	GGNNCC	1 cut(s)	25
PspPI	GGNCC	1 cut(s)	244
PsuI	RGATCY	2 cut(s)	23, 37
PsyI	GACNNNGTC	1 cut(s)	85
RseI	CAYNNNNRTG	1 cut(s)	286
SalI	GTCGAC	1 cut(s)	208
SaqAI	TTAA	2 cut(s)	375, 395
SatI	GCNGC	2 cut(s)	127, 293
Sau3AI	GATC	2 cut(s)	23, 37
Sau96I	GGNCC	1 cut(s)	244
SchI	GAGTC	1 cut(s)	205
ScrFI	CCNGG	1 cut(s)	15
SduI	GDGCHC	1 cut(s)	141
SetI	ASST	5 cut(s)	100, 131, 199, 413, 420
SfcI	CTRYAG	1 cut(s)	108
SfuI	TTCGAA	1 cut(s)	359
SinI	GGWCC	1 cut(s)	244
SmiMI	CAYNNNNRTG	1 cut(s)	286
Sse9I	AATT	1 cut(s)	430
SspMI	CTAG	2 cut(s)	41, 314
StyD4I	CCNGG	1 cut(s)	13
TaaI	ACNGT	2 cut(s)	340, 403
TaiI	ACGT	1 cut(s)	413
TaqI	TCGA	2 cut(s)	209, 359
TasI	AATT	1 cut(s)	430
Tru1I	TTAA	2 cut(s)	375, 395
Tru9I	TTAA	2 cut(s)	375, 395
TscAI	CASTG	1 cut(s)	149
TseFI	GTSAC	1 cut(s)	307
TseI	GCWGC	2 cut(s)	126, 292
Tsp45I	GTSAC	1 cut(s)	307
TspDTI	ATGAA	2 cut(s)	40, 276
TspRI	CASTG	1 cut(s)	149
Tth111I	GACNNNGTC	1 cut(s)	85
VpaK11BI	GGWCC	1 cut(s)	244
XapI	RAATTY	1 cut(s)	430
XbaI	TCTAGA	1 cut(s)	40
XmiI	GTMKAC	1 cut(s)	209
XspI	CTAG	2 cut(s)	41, 314

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.